Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014583

Physical Location & Seq

Genomic Coordinates Forward (+)

19175428 .. 19177362

Gene Structure 1935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGGAAGGTACCCTCTTCCCAAGTAGACCAGTCCTTCCCATTCAAACCAGCAGACCAATACAACCAAGCCCTCCTGTGAAATTCAATGCAACCACTTTGCCACCCCTTCCCCAAACCCCTTCTTCATTTCCTATTGACTCTCTTCTCCAGCACCTTCTCAACATCTCTTCTCCTCCCAACACTCCCCAAAACCTTAAACCCTTAAACCCACCACACCAAACCAATGCCGTTTTCCCTTCTCTTCAAATTTCAGTGGATTCGACTCCGAAACAGCACCAATTGAAGAAACCCACCTCGGTTTTAGTCCACAACTTTGAGGACAAGGCCAAACCAGAAGATGGGCTTATCGACTTCTTGACGGTAAAGGGTAAGATGATGTTCAATTCCATTGTAGAGTCGCCTTTGCATTGTGTGAATGAATTATGTGATTCTGCTAAGTTTGAGTTGCTTGAAGTTGATTTGATTAGTCTGTTGAAGGCATTAGACCTTTCTGGCAATTGGGAAAGAGCCCTTTTGTTGTTTGAATGGATTATGCTGAATTTACATTCTGAAAGTTTGAAATTGGATAAGCAGATCATTGAACTAATGGTTAGAATTTTGGGTAGAGAGTCACAGCATACTATTGCATCCAAGCTATTTGAGGTAATTCCCATAGAGGAATACTCGCTGGATGTTCGAGCTTATACCACTGTCATTCATGCATATTCTCGCACTGGCAAGTACGAACGAGCAATTGACTTGTTTGAGAAGTTGATGGAGATGGGTCTTTCGCCGACTTTGGTTACTTACAATGTCATGCTTGATGTTTATGGGAAGAAGGGTCGATCTTGGAATAAAATTTTAGGCCTGTTGGCTGAGATGAAGAGCAAAGGATTTGAATTTGATGATTTTACTTGTAGTACAGTGATATCTGCTTGTGGAAGAGAGGGTTTGTTGGATGAGGCAAAAGAGTTCTTTGCCGGATTGAAGTCACAAGGGTATGTACCAGGAACAGTTACCTATAATTCTTTGCTACAAGTTTTCGGCAAGGCGGGGGTGTTCATGGAGGCATTGAGCATATTGAAAGAAATGGAGGATAACAACTGCCCACCTGATGCTGTTACTTACAATGAGCTTGTGGCAGCTTATGTGAGGGCAGGATTCGCCGAGGAGGGTGCATCTGTGTTAAAAACAATGACCCAAAAAGGAACCATGCCAAACGCTGTTACATACACTACCGTTATAAATGCATATGGAAGAGCAGGAAAGGAGGAAGAAGCTCTAAGGTTGTTCAACCAAATGAAGGAGACTGGCTGTGTTCCTAATGTTTGTACCTACAATGCTGTCCTTGCAATGCTTGGAAAGAAGTCACGGCCAGAGGAGATGATAAAAATACTTTGTGATATGAAGTCGAGTGGATGTGCCCCTAACCGGATTACATGGAATACAATGCTTGCCATGTGTGGTGATAAGGGCAAGCACAAGTATGTGAATCAGAGACACCTTCAATACCTTGATCAGTGCATATGGACGGTGTGGGTCAGATATAGATGCTGCACAGATGCACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

516

Amino Acids

57.85

Weight (kDa)

6.8

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	221 - 272	3e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	224 - 270	2.8e-12	PPR repeat family
PPR	PF01535	227 - 256	1.3e-06	PPR repeat
PPR_2	PF13041	258 - 307	4.8e-11	PPR repeat family
PPR_3	PF13812	283 - 343	7.7e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	298 - 375	1.2e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	329 - 376	2e-12	PPR repeat family
PPR	PF01535	332 - 362	1.1e-06	PPR repeat
PPR_3	PF13812	352 - 412	6e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	364 - 411	2e-10	PPR repeat family
TPR_24	PF23276	383 - 477	1.1e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	383 - 505	3.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	387 - 448	7.4e-17	Pentatricopeptide repeat domain
PPR_1	PF12854	395 - 428	5.7e-10	PPR repeat
PPR_2	PF13041	399 - 446	3.7e-16	PPR repeat family
PPR	PF01535	402 - 432	9.5e-10	PPR repeat
PPR_2	PF13041	434 - 481	1e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18940
fragaria_vesca	FvH4_4g07880
malus_domestica	MD13G1249100.v1.1 MD16G1255600.v1.1
prunus_persica	Prupe.3G037500_v2.0.a1
pyrus_communis	pycom13g21970 pycom16g21670
rosa_chinensis	RchiOBHm_Chr4g0401161
rosa_laevigata	RLG00000009158
rosa_multiflora	Rmu_sc0003257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00346010
rosa_rugosa	Rorug04G0028400
rosa_samantha	Rh4AG105900 Rh4BG100900 Rh4CG114600 Rh4DG098100
rosa_wichuraiana	Rw4G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1223
Acc65I	GGTACC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	25
AciI	CCGC	1 cut(s)	1031
AcoI	YGGCCR	1 cut(s)	1352
AcsI	RAATTY	6 cut(s)	80, 246, 538, 594, 837, 878
AfaI	GTAC	5 cut(s)	10, 722, 901, 984, 1312
AfiI	CCNNNNNNNGG	3 cut(s)	338, 1282, 1410
AjnI	CCWGG	1 cut(s)	985
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	5 cut(s)	634, 680, 1114, 1124, 1259
AluI	AGCT	5 cut(s)	634, 680, 1114, 1124, 1259
Alw26I	GTCTC	2 cut(s)	1280, 1471
AoxI	GGCC	3 cut(s)	324, 844, 1352
ApeKI	GCWGC	2 cut(s)	1121, 1533
ApoI	RAATTY	6 cut(s)	80, 246, 538, 594, 837, 878
Asp718I	GGTACC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	1457
BaeGI	GKGCMC	1 cut(s)	1405
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	511
BbvI	GCAGC	2 cut(s)	1133, 1520
BccI	CCATC	3 cut(s)	332, 748, 754
BceAI	ACGGC	2 cut(s)	212, 1367
BcgI	CGANNNNNNTGC	2 cut(s)	1136, 1170
BciT130I	CCWGG	1 cut(s)	987
BclI	TGATCA	1 cut(s)	1495
BcoDI	GTCTC	2 cut(s)	1280, 1471
BisI	GCNGC	2 cut(s)	1122, 1534
BlsI	GCNGC	2 cut(s)	1123, 1535
Bme1390I	CCNGG	1 cut(s)	987
BmiI	GGNNCC	2 cut(s)	10, 1189
BmrFI	CCNGG	1 cut(s)	987
BmsI	GCATC	5 cut(s)	635, 1084, 1166, 1520, 1531
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpmI	CTGGAG	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	294, 1146
BsaWI	WCCGGW	1 cut(s)	1410
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 1282, 1410
Bse1I	ACTGG	3 cut(s)	29, 718, 1294
Bse3DI	GCAATG	1 cut(s)	1338
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	2 cut(s)	294, 1146
BseGI	GGATG	4 cut(s)	626, 676, 943, 1403
BseLI	CCNNNNNNNGG	3 cut(s)	338, 1282, 1410
BseMI	GCAATG	1 cut(s)	1338
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	3 cut(s)	29, 718, 1294
BseRI	GAGGAG	3 cut(s)	162, 1163, 1373
BseSI	GKGCMC	1 cut(s)	1405
BseXI	GCAGC	2 cut(s)	1133, 1520
BsgI	GTGCAG	1 cut(s)	1519
BshFI	GGCC	3 cut(s)	326, 846, 1354
BshNI	GGYRCC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	960, 1411
BslI	CCNNNNNNNGG	3 cut(s)	338, 1282, 1410
BsmAI	GTCTC	2 cut(s)	1280, 1471
BsnI	GGCC	3 cut(s)	326, 846, 1354
Bsp1286I	GDGCHC	2 cut(s)	511, 1405
Bsp143I	GATC	3 cut(s)	573, 824, 1495
BspACI	CCGC	1 cut(s)	1031
BspANI	GGCC	3 cut(s)	326, 846, 1354
BspCNI	CTCAG	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	10, 1189
BspQI	GCTCTTC	2 cut(s)	857, 1231
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	1338
BsrI	ACTGG	3 cut(s)	29, 718, 1294
BssECI	CCNNGG	2 cut(s)	294, 1146
BssMI	GATC	3 cut(s)	573, 824, 1495
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	6 cut(s)	361, 691, 904, 994, 1219, 1513
Bst6I	CTCTTC	7 cut(s)	20, 147, 172, 246, 857, 916, 1231
BstC8I	GCNNGC	2 cut(s)	1434, 1457
BstDEI	CTNAG	3 cut(s)	435, 855, 1262
BstF5I	GGATG	4 cut(s)	626, 676, 943, 1403
BstKTI	GATC	3 cut(s)	576, 827, 1498
BstMAI	GTCTC	2 cut(s)	1280, 1471
BstMBI	GATC	3 cut(s)	573, 824, 1495
BstMWI	GCNNNNNNNGC	2 cut(s)	1142, 1328
BstNI	CCWGG	1 cut(s)	987
BstSCI	CCNGG	1 cut(s)	985
BstSLI	GKGCMC	1 cut(s)	1405
BstV1I	GCAGC	2 cut(s)	1133, 1520
BsuRI	GGCC	3 cut(s)	326, 846, 1354
BtsCI	GGATG	4 cut(s)	626, 676, 943, 1403
BtsIMutI	CAGTG	5 cut(s)	258, 687, 711, 909, 1505
Cac8I	GCNNGC	2 cut(s)	1434, 1457
Csp6I	GTAC	5 cut(s)	9, 721, 900, 983, 1311
CviAII	CATG	6 cut(s)	698, 796, 1042, 1192, 1419, 1438
CviQI	GTAC	5 cut(s)	9, 721, 900, 983, 1311
DdeI	CTNAG	3 cut(s)	435, 855, 1262
DpnI	GATC	3 cut(s)	575, 826, 1497
DpnII	GATC	3 cut(s)	573, 824, 1495
EaeI	YGGCCR	1 cut(s)	1352
Eam1104I	CTCTTC	7 cut(s)	20, 147, 172, 246, 857, 916, 1231
EarI	CTCTTC	7 cut(s)	20, 147, 172, 246, 857, 916, 1231
Eco147I	AGGCCT	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	909
EcoRII	CCWGG	1 cut(s)	985
EcoRV	GATATC	1 cut(s)	909
EcoT22I	ATGCAT	2 cut(s)	703, 1231
EcoT38I	GRGCYC	1 cut(s)	511
FaeI	CATG	6 cut(s)	701, 799, 1045, 1195, 1422, 1441
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FatI	CATG	6 cut(s)	697, 795, 1041, 1191, 1418, 1437
FauI	CCCGC	1 cut(s)	1024
FauNDI	CATATG	2 cut(s)	1231, 1505
FbaI	TGATCA	1 cut(s)	1495
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	1122, 1534
FokI	GGATG	4 cut(s)	613, 683, 950, 1410
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	2 cut(s)	1122, 1534
GluI	GCNGC	2 cut(s)	1122, 1534
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	3 cut(s)	326, 846, 1354
HapII	CCGG	2 cut(s)	960, 1411
Hin1II	CATG	6 cut(s)	701, 799, 1045, 1195, 1422, 1441
HinfI	GANTC	8 cut(s)	137, 257, 262, 395, 428, 608, 1140, 1471
HpaII	CCGG	2 cut(s)	960, 1411
HphI	GGTGA	1 cut(s)	1457
Hpy166II	GTNNAC	2 cut(s)	26, 307
Hpy188I	TCNGA	4 cut(s)	267, 550, 1476, 1523
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	2 cut(s)	26, 307
HpyAV	CCTTC	9 cut(s)	44, 116, 129, 164, 246, 469, 811, 1276, 1493
HpyCH4III	ACNGT	6 cut(s)	361, 691, 904, 994, 1219, 1513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1142, 1328
HpyF3I	CTNAG	3 cut(s)	435, 855, 1262
Hsp92II	CATG	6 cut(s)	701, 799, 1045, 1195, 1422, 1441
KpnI	GGTACC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	1495
Kzo9I	GATC	3 cut(s)	573, 824, 1495
LguI	GCTCTTC	2 cut(s)	857, 1231
Lsp1109I	GCAGC	2 cut(s)	1133, 1520
LweI	GCATC	5 cut(s)	635, 1084, 1166, 1520, 1531
MaeIII	GTNAC	7 cut(s)	609, 781, 969, 994, 1099, 1204, 1347
MalI	GATC	3 cut(s)	575, 826, 1497
MboI	GATC	3 cut(s)	573, 824, 1495
MfeI	CAATTG	3 cut(s)	278, 496, 732
MhlI	GDGCHC	2 cut(s)	511, 1405
MlyI	GAGTC	4 cut(s)	131, 256, 404, 617
MmeI	TCCRAC	1 cut(s)	915
Mph1103I	ATGCAT	2 cut(s)	703, 1231
MseI	TTAA	3 cut(s)	195, 203, 1166
MslI	CAYNNNNRTG	1 cut(s)	1464
MspI	CCGG	2 cut(s)	960, 1411
MspR9I	CCNGG	1 cut(s)	987
MunI	CAATTG	3 cut(s)	278, 496, 732
MvaI	CCWGG	1 cut(s)	987
MwoI	GCNNNNNNNGC	2 cut(s)	1142, 1328
NdeI	CATATG	2 cut(s)	1231, 1505
NdeII	GATC	3 cut(s)	573, 824, 1495
NlaIII	CATG	6 cut(s)	701, 799, 1045, 1195, 1422, 1441
NlaIV	GGNNCC	2 cut(s)	10, 1189
NmeAIII	GCCGAG	1 cut(s)	1171
NmuCI	GTSAC	3 cut(s)	609, 969, 1347
NsiI	ATGCAT	2 cut(s)	703, 1231
PceI	AGGCCT	1 cut(s)	846
PciSI	GCTCTTC	2 cut(s)	857, 1231
PfeI	GAWTC	4 cut(s)	257, 428, 1140, 1471
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	1123, 1535
PleI	GAGTC	4 cut(s)	131, 256, 403, 616
PpsI	GAGTC	4 cut(s)	131, 256, 403, 616
PsiI	TTATAA	1 cut(s)	1223
Psp6I	CCWGG	1 cut(s)	985
PspGI	CCWGG	1 cut(s)	985
PspN4I	GGNNCC	2 cut(s)	10, 1189
RsaI	GTAC	5 cut(s)	10, 722, 901, 984, 1312
RsaNI	GTAC	5 cut(s)	9, 721, 900, 983, 1311
RseI	CAYNNNNRTG	1 cut(s)	1464
SapI	GCTCTTC	2 cut(s)	857, 1231
SaqAI	TTAA	3 cut(s)	195, 203, 1166
SatI	GCNGC	2 cut(s)	1122, 1534
Sau3AI	GATC	3 cut(s)	573, 824, 1495
SchI	GAGTC	4 cut(s)	131, 256, 404, 617
ScrFI	CCNGG	1 cut(s)	987
SduI	GDGCHC	2 cut(s)	511, 1405
SfaNI	GCATC	5 cut(s)	635, 1084, 1166, 1520, 1531
SmiMI	CAYNNNNRTG	1 cut(s)	1464
SseBI	AGGCCT	1 cut(s)	846
SsiI	CCGC	1 cut(s)	1031
StuI	AGGCCT	1 cut(s)	846
StyD4I	CCNGG	1 cut(s)	985
TaaI	ACNGT	6 cut(s)	361, 691, 904, 994, 1219, 1513
TaqI	TCGA	5 cut(s)	260, 348, 676, 823, 1391
TatI	WGTACW	1 cut(s)	899
TfiI	GAWTC	4 cut(s)	257, 428, 1140, 1471
Tru1I	TTAA	3 cut(s)	195, 203, 1166
Tru9I	TTAA	3 cut(s)	195, 203, 1166
TscAI	CASTG	5 cut(s)	258, 694, 718, 909, 1505
TseFI	GTSAC	3 cut(s)	609, 969, 1347
TseI	GCWGC	2 cut(s)	1121, 1533
Tsp45I	GTSAC	3 cut(s)	609, 969, 1347
TspDTI	ATGAA	7 cut(s)	114, 432, 686, 875, 1030, 1295, 1400
TspRI	CASTG	5 cut(s)	258, 694, 718, 909, 1505
Van91I	CCANNNNNTGG	1 cut(s)	338
XapI	RAATTY	6 cut(s)	80, 246, 538, 594, 837, 878
XmiI	GTMKAC	1 cut(s)	25
Zsp2I	ATGCAT	2 cut(s)	703, 1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.