Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014583

Physical Location & Seq

Genomic Coordinates Reverse (-)

3989371 .. 3991007

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0028400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAACACACTGGCCAAGAGCAAGGATTAGATGAGTTGAGATCTCAAATTACCAGATTCGGCCACATATACAAGCTCAAAATAGGTGAAAGAATAGGACAGAACTTTCGGATGTTCAGTTTTTCAGAAGTAGTGGCTGCAACAGATAACTTCTCGTCTGCCAGCAAGCTAGGACAGGGTGGGTTTGGACCTGTTTACAAGGGGGTATTACCAGATGGGGAACAGGTAGGAGTAAAGAGACTCGCGAGAAGTTCAGGACAAGGACTAGAAGAATTCATGAATGAGATTACACTTATAGCTGAGCTTCAACATAGTAATCTTGTTAGGCTATTAGGTTGTTGCATTCAAGGAGAAGAAAAGATTCTGATTTACGAATTTATGGCAAATAAGAGCTTGGATGCCTTCCTATTTGACTCCACTAGAAGGAAGCAATTGGACTGGCAAACACGGGTAAACATCATTGAGGGAATTGCACAAGGACTTCTCTATCTTCATAAGCATTCTAGAGTTAGAGTCATACACAGAGATCTGAAAGCTAGTAACATTCTGCTTGATGAAAATATGAACCCTAAGATCTCAGACTTTGGAACGGCCAGAATTTTCGGACAGAATGAATCTATGGCAAATACAGTTAGAGTTGTCGGAACATACGGCTATATGTCTCCAGAGTATGCCATGAGGGGCATTTTCTCTGAAAAGTCTGACGTTTACAGTTTTGGTGTTCTACTGTTGGAGATTATAAGTGGCAAAAAGAACACTACTTTTCTTTCATCTAATGGTCTCTGCCTTATCGAACTTGCCTGGGAATTGTGGAAACAAGGCCAGACCCTGGAGATAAAGGACACATTACTTGACTCTGGTTCCAAAGAGGAAGTTTTAAAATTTATTCAGGTTGGTCTCTTATGTGTTCAAGAGTATGCAGAAGATAGAGCTACCATGTCAGAAGTAATATCAATGCTTACAAGTGATGTCACACCTTTGTCTGAACCAAAGCAACCTGCATACACTATTTCAAGAAGTGAAGAAGCTGGGTCAACGCGTACGTTACCTGATAGAAGTTCAAATACGGCTTCAGTAAATAATGTATCCATTACTGTGATGGAAGGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

370

Amino Acids

41.33

Weight (kDa)

5.97

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	52 - 317	2.1e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	54 - 319	6.7e-49	Protein tyrosine and serine/threonine kinase
DUF3403	PF11883	323 - 370	9.2e-07	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18940
fragaria_vesca	FvH4_4g07880
malus_domestica	MD13G1249100.v1.1 MD16G1255600.v1.1
prunus_persica	Prupe.3G037500_v2.0.a1
pyrus_communis	pycom13g21970 pycom16g21670
rosa_chinensis	RchiOBHm_Chr4g0401161
rosa_laevigata	RLG00000009158
rosa_multiflora	Rmu_sc0003257.1_g000006
rosa_roxburghii	Rroxscaffold_5G00346010
rosa_rugosa	Rorug04G0028400
rosa_samantha	Rh4AG105900 Rh4BG100900 Rh4CG114600 Rh4DG098100
rosa_wichuraiana	Rw4G008590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
Acc36I	ACCTGC	1 cut(s)	1006
AccB7I	CCANNNNNTGG	1 cut(s)	829
AccII	CGCG	2 cut(s)	245, 1039
AcoI	YGGCCR	3 cut(s)	13, 61, 591
AcsI	RAATTY	4 cut(s)	272, 374, 597, 881
AcuI	CTGAAG	1 cut(s)	1056
AfaI	GTAC	1 cut(s)	1042
AfiI	CCNNNNNNNGG	2 cut(s)	423, 829
AflIII	ACRYGT	1 cut(s)	1037
AgsI	TTSAA	5 cut(s)	308, 347, 911, 1014, 1062
AjnI	CCWGG	2 cut(s)	800, 828
AluBI	AGCT	8 cut(s)	76, 169, 299, 304, 393, 536, 932, 1028
AluI	AGCT	8 cut(s)	76, 169, 299, 304, 393, 536, 932, 1028
Alw26I	GTCTC	4 cut(s)	232, 666, 785, 902
AlwNI	CAGNNNCTG	1 cut(s)	829
AoxI	GGCC	4 cut(s)	13, 61, 591, 820
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	4 cut(s)	272, 374, 597, 881
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
Asp700I	GAANNNNTTC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	15
BarI	GAAGNNNNNNTAC	2 cut(s)	1048, 1080
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	209, 1093
BceAI	ACGGC	3 cut(s)	606, 667, 1083
BciT130I	CCWGG	2 cut(s)	802, 830
BciVI	GTATCC	1 cut(s)	1096
BcoDI	GTCTC	4 cut(s)	232, 666, 785, 902
BfaI	CTAG	5 cut(s)	170, 266, 420, 504, 537
BfuAI	ACCTGC	1 cut(s)	1006
BfuI	GTATCC	1 cut(s)	1096
BglII	AGATCT	3 cut(s)	41, 526, 573
BisI	GCNGC	1 cut(s)	138
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	802, 830
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	862
BmrFI	CCNGG	2 cut(s)	802, 830
BmsI	GCATC	1 cut(s)	388
BpmI	CTGGAG	2 cut(s)	648, 851
Bpu1102I	GCTNAGC	1 cut(s)	300
BsaI	GGTCTC	2 cut(s)	785, 902
BsaJI	CCNNGG	2 cut(s)	801, 828
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 829
Bse1I	ACTGG	2 cut(s)	16, 443
BseBI	CCWGG	2 cut(s)	802, 830
BseDI	CCNNGG	2 cut(s)	801, 828
BseGI	GGATG	2 cut(s)	117, 403
BseLI	CCNNNNNNNGG	2 cut(s)	423, 829
BseMII	CTCAG	2 cut(s)	291, 591
BseNI	ACTGG	2 cut(s)	16, 443
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	1028
Bsh1236I	CGCG	2 cut(s)	245, 1039
BshFI	GGCC	4 cut(s)	15, 63, 593, 822
BsiWI	CGTACG	1 cut(s)	1040
BslI	CCNNNNNNNGG	2 cut(s)	423, 829
BsmAI	GTCTC	4 cut(s)	232, 666, 785, 902
BsmI	GAATGC	2 cut(s)	342, 499
BsnI	GGCC	4 cut(s)	15, 63, 593, 822
Bso31I	GGTCTC	2 cut(s)	785, 902
Bsp143I	GATC	3 cut(s)	41, 526, 573
Bsp1720I	GCTNAGC	1 cut(s)	300
Bsp68I	TCGCGA	1 cut(s)	245
BspANI	GGCC	4 cut(s)	15, 63, 593, 822
BspCNI	CTCAG	2 cut(s)	292, 590
BspFNI	CGCG	2 cut(s)	245, 1039
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	862
BspMI	ACCTGC	1 cut(s)	1006
BspTNI	GGTCTC	2 cut(s)	785, 902
BsrI	ACTGG	2 cut(s)	16, 443
BssECI	CCNNGG	2 cut(s)	801, 828
BssMI	GATC	3 cut(s)	41, 526, 573
Bst2UI	CCWGG	2 cut(s)	802, 830
Bst4CI	ACNGT	4 cut(s)	631, 713, 729, 1096
BstC8I	GCNNGC	2 cut(s)	163, 167
BstDEI	CTNAG	3 cut(s)	300, 570, 577
BstF5I	GGATG	2 cut(s)	117, 403
BstFNI	CGCG	2 cut(s)	245, 1039
BstKTI	GATC	3 cut(s)	44, 529, 576
BstMAI	GTCTC	4 cut(s)	232, 666, 785, 902
BstMBI	GATC	3 cut(s)	41, 526, 573
BstNI	CCWGG	2 cut(s)	802, 830
BstSCI	CCNGG	2 cut(s)	800, 828
BstUI	CGCG	2 cut(s)	245, 1039
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	3 cut(s)	41, 526, 573
BstYI	RGATCY	3 cut(s)	41, 526, 573
BsuI	GTATCC	1 cut(s)	1096
BsuRI	GGCC	4 cut(s)	15, 63, 593, 822
BtsCI	GGATG	2 cut(s)	117, 403
BtsIMutI	CAGTG	1 cut(s)	9
BtuMI	TCGCGA	1 cut(s)	245
BveI	ACCTGC	1 cut(s)	1006
Cac8I	GCNNGC	2 cut(s)	163, 167
CaiI	CAGNNNCTG	1 cut(s)	829
CciI	TCATGA	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	1041
CviAII	CATG	3 cut(s)	277, 676, 937
CviQI	GTAC	1 cut(s)	1041
DdeI	CTNAG	3 cut(s)	300, 570, 577
DpnI	GATC	3 cut(s)	43, 528, 575
DpnII	GATC	3 cut(s)	41, 526, 573
DraI	TTTAAA	1 cut(s)	879
EaeI	YGGCCR	3 cut(s)	13, 61, 591
Eco31I	GGTCTC	2 cut(s)	785, 902
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	1056
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	800, 828
FaeI	CATG	3 cut(s)	280, 679, 940
FatI	CATG	3 cut(s)	276, 675, 936
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	2 cut(s)	124, 410
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	5 cut(s)	170, 266, 420, 504, 537
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	1 cut(s)	1032
GsuI	CTGGAG	2 cut(s)	648, 851
HaeIII	GGCC	4 cut(s)	15, 63, 593, 822
Hin1II	CATG	3 cut(s)	280, 679, 940
HincII	GTYRAC	1 cut(s)	1035
HindII	GTYRAC	1 cut(s)	1035
HinfI	GANTC	7 cut(s)	57, 240, 361, 413, 513, 614, 854
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	4 cut(s)	196, 454, 709, 1035
Hpy188III	TCNNGA	7 cut(s)	244, 255, 277, 504, 665, 911, 1014
Hpy8I	GTNNAC	4 cut(s)	196, 454, 709, 1035
HpyAV	CCTTC	3 cut(s)	412, 417, 1097
HpyCH4III	ACNGT	4 cut(s)	631, 713, 729, 1096
HpyCH4IV	ACGT	2 cut(s)	705, 1043
HpyCH4V	TGCA	5 cut(s)	140, 342, 473, 920, 1001
HpyF3I	CTNAG	3 cut(s)	300, 570, 577
HpySE526I	ACGT	2 cut(s)	705, 1043
Hsp92II	CATG	3 cut(s)	280, 679, 940
Kzo9I	GATC	3 cut(s)	41, 526, 573
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	5 cut(s)	170, 266, 420, 504, 537
MaeII	ACGT	2 cut(s)	705, 1043
MaeIII	GTNAC	3 cut(s)	539, 970, 1044
MalI	GATC	3 cut(s)	43, 528, 575
MboI	GATC	3 cut(s)	41, 526, 573
MboII	GAAGA	5 cut(s)	281, 365, 482, 935, 1034
MfeI	CAATTG	1 cut(s)	431
MflI	RGATCY	3 cut(s)	41, 526, 573
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	8 cut(s)	48, 272, 374, 431, 468, 597, 806, 881
MluI	ACGCGT	1 cut(s)	1037
MluNI	TGGCCA	1 cut(s)	15
MlyI	GAGTC	4 cut(s)	234, 407, 522, 848
MmeI	TCCRAC	2 cut(s)	622, 711
MnlI	CCTC	3 cut(s)	457, 672, 862
Mox20I	TGGCCA	1 cut(s)	15
MroXI	GAANNNNTTC	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	1 cut(s)	878
MslI	CAYNNNNRTG	1 cut(s)	1094
Msp20I	TGGCCA	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	802, 830
MunI	CAATTG	1 cut(s)	431
Mva1269I	GAATGC	2 cut(s)	342, 499
MvaI	CCWGG	2 cut(s)	802, 830
MvnI	CGCG	2 cut(s)	245, 1039
NdeII	GATC	3 cut(s)	41, 526, 573
NlaIII	CATG	3 cut(s)	280, 679, 940
NlaIV	GGNNCC	1 cut(s)	862
NmuCI	GTSAC	1 cut(s)	970
NruI	TCGCGA	1 cut(s)	245
PagI	TCATGA	1 cut(s)	276
PctI	GAATGC	2 cut(s)	342, 499
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	57, 361, 614
Pfl23II	CGTACG	1 cut(s)	1040
PflMI	CCANNNNNTGG	1 cut(s)	829
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	4 cut(s)	234, 407, 521, 848
PpsI	GAGTC	4 cut(s)	234, 407, 521, 848
PsiI	TTATAA	1 cut(s)	740
Psp6I	CCWGG	2 cut(s)	800, 828
PspFI	CCCAGC	1 cut(s)	1028
PspGI	CCWGG	2 cut(s)	800, 828
PspLI	CGTACG	1 cut(s)	1040
PspN4I	GGNNCC	1 cut(s)	862
PspPI	GGNCC	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	829
PsuI	RGATCY	3 cut(s)	41, 526, 573
RruI	TCGCGA	1 cut(s)	245
RsaI	GTAC	1 cut(s)	1042
RsaNI	GTAC	1 cut(s)	1041
RseI	CAYNNNNRTG	1 cut(s)	1094
SaqAI	TTAA	1 cut(s)	878
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	41, 526, 573
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	4 cut(s)	234, 407, 522, 848
ScrFI	CCNGG	2 cut(s)	802, 830
SfaNI	GCATC	1 cut(s)	388
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	1094
Sse9I	AATT	8 cut(s)	48, 272, 374, 431, 468, 597, 806, 881
SspMI	CTAG	5 cut(s)	170, 266, 420, 504, 537
StyD4I	CCNGG	2 cut(s)	800, 828
TaaI	ACNGT	4 cut(s)	631, 713, 729, 1096
TaiI	ACGT	2 cut(s)	708, 1046
TaqI	TCGA	1 cut(s)	792
TasI	AATT	8 cut(s)	48, 272, 374, 431, 468, 597, 806, 881
TfiI	GAWTC	3 cut(s)	57, 361, 614
Tru1I	TTAA	1 cut(s)	878
Tru9I	TTAA	1 cut(s)	878
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	970
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	970
TspDTI	ATGAA	8 cut(s)	17, 265, 293, 482, 570, 578, 627, 759
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	829
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	4 cut(s)	272, 374, 597, 881
XbaI	TCTAGA	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1096
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	5 cut(s)	170, 266, 420, 504, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.