Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18940 |
| fragaria_vesca | FvH4_4g07880 |
| malus_domestica | MD13G1249100.v1.1 MD16G1255600.v1.1 |
| prunus_persica | Prupe.3G037500_v2.0.a1 |
| pyrus_communis | pycom13g21970 pycom16g21670 |
| rosa_chinensis | RchiOBHm_Chr4g0401161 |
| rosa_laevigata | RLG00000009158 |
| rosa_multiflora | Rmu_sc0003257.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00346010 |
| rosa_rugosa | Rorug04G0028400 |
| rosa_samantha | Rh4AG105900 Rh4BG100900 Rh4CG114600 Rh4DG098100 |
| rosa_wichuraiana | Rw4G008590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2172 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 353 |
| AccI | GTMKAC | 1 cut(s) | 1710 |
| AciI | CCGC | 3 cut(s) | 296, 1046, 2503 |
| AcoI | YGGCCR | 1 cut(s) | 2258 |
| AcsI | RAATTY | 9 cut(s) | 80, 249, 316, 568, 609, 852, 893, 1818, 2226 |
| AcuI | CTGAAG | 3 cut(s) | 308, 1916, 2030 |
| AfaI | GTAC | 7 cut(s) | 10, 727, 916, 999, 1327, 1601, 2024 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 353, 868, 1297, 1458, 2508, 2509 |
| AflII | CTTAAG | 1 cut(s) | 556 |
| AflIII | ACRYGT | 3 cut(s) | 1995, 2016, 2082 |
| AjnI | CCWGG | 2 cut(s) | 1000, 1433 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 218, 250 |
| AleI | CACNNNNGTG | 1 cut(s) | 1232 |
| Alw21I | GWGCWC | 1 cut(s) | 1894 |
| Alw26I | GTCTC | 3 cut(s) | 488, 785, 2170 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1007, 1700 |
| AoxI | GGCC | 6 cut(s) | 859, 1062, 2041, 2130, 2217, 2258 |
| ApeKI | GCWGC | 5 cut(s) | 412, 1136, 1387, 1589, 1691 |
| ApoI | RAATTY | 9 cut(s) | 80, 249, 316, 568, 609, 852, 893, 1818, 2226 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 434, 543 |
| AspS9I | GGNCC | 3 cut(s) | 310, 499, 2131 |
| AsuC2I | CCSGG | 1 cut(s) | 2006 |
| AsuHPI | GGTGA | 4 cut(s) | 165, 352, 777, 931 |
| AsuII | TTCGAA | 1 cut(s) | 537 |
| AvaII | GGWCC | 2 cut(s) | 310, 499 |
| BaeGI | GKGCMC | 2 cut(s) | 1420, 2208 |
| BanII | GRGCYC | 1 cut(s) | 526 |
| Bbv12I | GWGCWC | 1 cut(s) | 1894 |
| BbvCI | CCTCAGC | 1 cut(s) | 216 |
| BbvI | GCAGC | 5 cut(s) | 424, 1148, 1374, 1576, 1703 |
| BccI | CCATC | 7 cut(s) | 28, 127, 347, 826, 1820, 2071, 2390 |
| BceAI | ACGGC | 2 cut(s) | 2056, 2245 |
| BciT130I | CCWGG | 2 cut(s) | 1002, 1435 |
| BciVI | GTATCC | 1 cut(s) | 1931 |
| BclI | TGATCA | 4 cut(s) | 1551, 1611, 1761, 2476 |
| BcnI | CCSGG | 1 cut(s) | 2006 |
| BcoDI | GTCTC | 3 cut(s) | 488, 785, 2170 |
| BfaI | CTAG | 4 cut(s) | 1181, 1842, 1986, 2162 |
| BfmI | CTRYAG | 1 cut(s) | 666 |
| BfrI | CTTAAG | 1 cut(s) | 556 |
| BfuI | GTATCC | 1 cut(s) | 1931 |
| BglII | AGATCT | 1 cut(s) | 2053 |
| BisI | GCNGC | 6 cut(s) | 297, 413, 1137, 1388, 1590, 1692 |
| BlpI | GCTNAGC | 1 cut(s) | 2375 |
| BlsI | GCNGC | 6 cut(s) | 298, 414, 1138, 1389, 1591, 1693 |
| Bme1390I | CCNGG | 3 cut(s) | 1002, 1435, 2006 |
| Bme18I | GGWCC | 2 cut(s) | 310, 499 |
| BmgT120I | GGNCC | 3 cut(s) | 310, 499, 2131 |
| BmiI | GGNNCC | 1 cut(s) | 312 |
| BmrFI | CCNGG | 3 cut(s) | 1002, 1435, 2006 |
| BmsI | GCATC | 6 cut(s) | 286, 650, 1099, 1181, 1576, 1959 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 662, 694 |
| BpmI | CTGGAG | 1 cut(s) | 134 |
| Bpu10I | CCTNAGC | 2 cut(s) | 216, 1776 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2375 |
| Bpu14I | TTCGAA | 1 cut(s) | 537 |
| BpuEI | CTTGAG | 1 cut(s) | 1087 |
| BpuMI | CCSGG | 1 cut(s) | 2006 |
| BsaI | GGTCTC | 1 cut(s) | 785 |
| BsaJI | CCNNGG | 2 cut(s) | 1342, 2430 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 106, 136, 1773, 1803 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 353, 868, 1297, 1458, 2508, 2509 |
| Bse1I | ACTGG | 2 cut(s) | 733, 1688 |
| Bse3DI | GCAATG | 2 cut(s) | 95, 1939 |
| BseBI | CCWGG | 2 cut(s) | 1002, 1435 |
| BseDI | CCNNGG | 2 cut(s) | 1342, 2430 |
| BseGI | GGATG | 3 cut(s) | 20, 1418, 2401 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 353, 868, 1297, 1458, 2508, 2509 |
| BseMI | GCAATG | 2 cut(s) | 95, 1939 |
| BseMII | CTCAG | 7 cut(s) | 125, 152, 230, 576, 1152, 2331, 2363 |
| BseNI | ACTGG | 2 cut(s) | 733, 1688 |
| BseRI | GAGGAG | 4 cut(s) | 99, 114, 892, 1388 |
| BseSI | GKGCMC | 2 cut(s) | 1420, 2208 |
| BseX3I | CGGCCG | 1 cut(s) | 2258 |
| BseXI | GCAGC | 5 cut(s) | 424, 1148, 1374, 1576, 1703 |
| BseYI | CCCAGC | 1 cut(s) | 1845 |
| BsgI | GTGCAG | 1 cut(s) | 1575 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2261 |
| BshFI | GGCC | 6 cut(s) | 861, 1064, 2043, 2132, 2219, 2260 |
| BsiEI | CGRYCG | 1 cut(s) | 2261 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1894 |
| BsiSI | CCGG | 1 cut(s) | 2005 |
| BslFI | GGGAC | 3 cut(s) | 296, 1547, 1694 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 353, 868, 1297, 1458, 2508, 2509 |
| BsmAI | GTCTC | 3 cut(s) | 488, 785, 2170 |
| BsmFI | GGGAC | 3 cut(s) | 296, 1547, 1694 |
| BsmI | GAATGC | 2 cut(s) | 1353, 1913 |
| BsnI | GGCC | 6 cut(s) | 861, 1064, 2043, 2132, 2219, 2260 |
| Bso31I | GGTCTC | 1 cut(s) | 785 |
| Bsp119I | TTCGAA | 1 cut(s) | 537 |
| Bsp1286I | GDGCHC | 4 cut(s) | 526, 1420, 1894, 2208 |
| Bsp1407I | TGTACA | 1 cut(s) | 2022 |
| Bsp143I | GATC | 6 cut(s) | 839, 1551, 1611, 1761, 2053, 2476 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2375 |
| Bsp19I | CCATGG | 1 cut(s) | 2430 |
| BspACI | CCGC | 3 cut(s) | 296, 1046, 2503 |
| BspANI | GGCC | 6 cut(s) | 861, 1064, 2043, 2132, 2219, 2260 |
| BspCNI | CTCAG | 7 cut(s) | 124, 153, 229, 575, 1153, 2330, 2362 |
| BspLI | GGNNCC | 1 cut(s) | 312 |
| BspT104I | TTCGAA | 1 cut(s) | 537 |
| BspTI | CTTAAG | 1 cut(s) | 556 |
| BspTNI | GGTCTC | 1 cut(s) | 785 |
| BsrDI | GCAATG | 2 cut(s) | 95, 1939 |
| BsrGI | TGTACA | 1 cut(s) | 2022 |
| BsrI | ACTGG | 2 cut(s) | 733, 1688 |
| BssECI | CCNNGG | 2 cut(s) | 1342, 2430 |
| BssMI | GATC | 6 cut(s) | 839, 1551, 1611, 1761, 2053, 2476 |
| BssT1I | CCWWGG | 2 cut(s) | 1342, 2430 |
| Bst2UI | CCWGG | 2 cut(s) | 1002, 1435 |
| Bst4CI | ACNGT | 6 cut(s) | 919, 1009, 1234, 1427, 1569, 2179 |
| Bst6I | CTCTTC | 4 cut(s) | 175, 249, 931, 1263 |
| BstAFI | CTTAAG | 1 cut(s) | 556 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 418 |
| BstAUI | TGTACA | 1 cut(s) | 2022 |
| BstBI | TTCGAA | 1 cut(s) | 537 |
| BstC8I | GCNNGC | 3 cut(s) | 1449, 2198, 2363 |
| BstDSI | CCRYGG | 1 cut(s) | 2430 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 866 |
| BstF5I | GGATG | 3 cut(s) | 20, 1418, 2401 |
| BstKTI | GATC | 6 cut(s) | 842, 1554, 1614, 1764, 2056, 2479 |
| BstMAI | GTCTC | 3 cut(s) | 488, 785, 2170 |
| BstMBI | GATC | 6 cut(s) | 839, 1551, 1611, 1761, 2053, 2476 |
| BstMCI | CGRYCG | 1 cut(s) | 2261 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 418, 1781, 2371 |
| BstNI | CCWGG | 2 cut(s) | 1002, 1435 |
| BstNSI | RCATGY | 4 cut(s) | 1999, 2020, 2086, 2212 |
| BstSCI | CCNGG | 3 cut(s) | 1000, 1433, 2004 |
| BstSFI | CTRYAG | 1 cut(s) | 666 |
| BstSLI | GKGCMC | 2 cut(s) | 1420, 2208 |
| BstV1I | GCAGC | 5 cut(s) | 424, 1148, 1374, 1576, 1703 |
| BstX2I | RGATCY | 1 cut(s) | 2053 |
| BstYI | RGATCY | 1 cut(s) | 2053 |
| BstZI | CGGCCG | 1 cut(s) | 2258 |
| BsuI | GTATCC | 1 cut(s) | 1931 |
| BsuRI | GGCC | 6 cut(s) | 861, 1064, 2043, 2132, 2219, 2260 |
| BtgI | CCRYGG | 1 cut(s) | 2430 |
| BtsCI | GGATG | 3 cut(s) | 20, 1418, 2401 |
| BtsI | GCAGTG | 1 cut(s) | 2397 |
| BtsIMutI | CAGTG | 4 cut(s) | 1561, 1892, 2175, 2397 |
| Cac8I | GCNNGC | 3 cut(s) | 1449, 2198, 2363 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1007, 1700 |
| Cfr13I | GGNCC | 3 cut(s) | 310, 499, 2131 |
| Csp6I | GTAC | 7 cut(s) | 9, 726, 915, 998, 1326, 1600, 2023 |
| CviQI | GTAC | 7 cut(s) | 9, 726, 915, 998, 1326, 1600, 2023 |
| DpnI | GATC | 6 cut(s) | 841, 1553, 1613, 1763, 2055, 2478 |
| DpnII | GATC | 6 cut(s) | 839, 1551, 1611, 1761, 2053, 2476 |
| DraI | TTTAAA | 1 cut(s) | 207 |
| EaeI | YGGCCR | 1 cut(s) | 2258 |
| EagI | CGGCCG | 1 cut(s) | 2258 |
| Eam1104I | CTCTTC | 4 cut(s) | 175, 249, 931, 1263 |
| EarI | CTCTTC | 4 cut(s) | 175, 249, 931, 1263 |
| EclXI | CGGCCG | 1 cut(s) | 2258 |
| Eco130I | CCWWGG | 2 cut(s) | 1342, 2430 |
| Eco147I | AGGCCT | 2 cut(s) | 861, 1064 |
| Eco24I | GRGCYC | 1 cut(s) | 526 |
| Eco31I | GGTCTC | 1 cut(s) | 785 |
| Eco32I | GATATC | 1 cut(s) | 924 |
| Eco47I | GGWCC | 2 cut(s) | 310, 499 |
| Eco52I | CGGCCG | 1 cut(s) | 2258 |
| Eco57I | CTGAAG | 3 cut(s) | 308, 1916, 2030 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 866 |
| EcoRI | GAATTC | 2 cut(s) | 609, 2226 |
| EcoRII | CCWGG | 2 cut(s) | 1000, 1433 |
| EcoRV | GATATC | 1 cut(s) | 924 |
| EcoT14I | CCWWGG | 2 cut(s) | 1342, 2430 |
| EcoT22I | ATGCAT | 1 cut(s) | 1246 |
| EcoT38I | GRGCYC | 1 cut(s) | 526 |
| ErhI | CCWWGG | 2 cut(s) | 1342, 2430 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 342, 374, 2109, 2141, 2482, 2514 |
| FaqI | GGGAC | 3 cut(s) | 296, 1547, 1694 |
| FauI | CCCGC | 2 cut(s) | 1039, 2510 |
| FauNDI | CATATG | 3 cut(s) | 1246, 1293, 1561 |
| FbaI | TGATCA | 4 cut(s) | 1551, 1611, 1761, 2476 |
| FblI | GTMKAC | 1 cut(s) | 1710 |
| Fnu4HI | GCNGC | 6 cut(s) | 297, 413, 1137, 1388, 1590, 1692 |
| FokI | GGATG | 3 cut(s) | 7, 1425, 2408 |
| FriOI | GRGCYC | 1 cut(s) | 526 |
| Fsp4HI | GCNGC | 6 cut(s) | 297, 413, 1137, 1388, 1590, 1692 |
| FspBI | CTAG | 4 cut(s) | 1181, 1842, 1986, 2162 |
| GluI | GCNGC | 6 cut(s) | 297, 413, 1137, 1388, 1590, 1692 |
| GsaI | CCCAGC | 1 cut(s) | 1849 |
| GsuI | CTGGAG | 1 cut(s) | 134 |
| HaeIII | GGCC | 6 cut(s) | 861, 1064, 2043, 2132, 2219, 2260 |
| HapII | CCGG | 1 cut(s) | 2005 |
| HpaII | CCGG | 1 cut(s) | 2005 |
| HphI | GGTGA | 4 cut(s) | 165, 352, 777, 931 |
| Hpy166II | GTNNAC | 2 cut(s) | 906, 1711 |
| Hpy188III | TCNNGA | 6 cut(s) | 24, 362, 487, 1499, 1918, 2033 |
| Hpy8I | GTNNAC | 2 cut(s) | 906, 1711 |
| HpyCH4III | ACNGT | 6 cut(s) | 919, 1009, 1234, 1427, 1569, 2179 |
| HpyCH4IV | ACGT | 1 cut(s) | 742 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 418, 1781, 2371 |
| HpySE526I | ACGT | 1 cut(s) | 742 |
| Ksp22I | TGATCA | 4 cut(s) | 1551, 1611, 1761, 2476 |
| Kzo9I | GATC | 6 cut(s) | 839, 1551, 1611, 1761, 2053, 2476 |
| LmnI | GCTCC | 3 cut(s) | 772, 879, 1781 |
| Lsp1109I | GCAGC | 5 cut(s) | 424, 1148, 1374, 1576, 1703 |
| LweI | GCATC | 6 cut(s) | 286, 650, 1099, 1181, 1576, 1959 |
| MaeI | CTAG | 4 cut(s) | 1181, 1842, 1986, 2162 |
| MaeII | ACGT | 1 cut(s) | 742 |
| MaeIII | GTNAC | 9 cut(s) | 624, 796, 984, 1009, 1026, 1114, 1219, 1636, 2059 |
| MalI | GATC | 6 cut(s) | 841, 1553, 1613, 1763, 2055, 2478 |
| MboI | GATC | 6 cut(s) | 839, 1551, 1611, 1761, 2053, 2476 |
| MboII | GAAGA | 9 cut(s) | 162, 236, 301, 362, 841, 948, 1280, 1519, 2129 |
| MfeI | CAATTG | 5 cut(s) | 511, 747, 1096, 1765, 2356 |
| MflI | RGATCY | 1 cut(s) | 2053 |
| MhlI | GDGCHC | 4 cut(s) | 526, 1420, 1894, 2208 |
| MlyI | GAGTC | 4 cut(s) | 109, 134, 632, 2341 |
| MmeI | TCCRAC | 4 cut(s) | 68, 576, 1557, 2087 |
| Mph1103I | ATGCAT | 1 cut(s) | 1246 |
| MroXI | GAANNNNTTC | 2 cut(s) | 434, 543 |
| MseI | TTAA | 9 cut(s) | 206, 557, 578, 759, 980, 1076, 1542, 1856, 2451 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1232, 1479 |
| MspCI | CTTAAG | 1 cut(s) | 556 |
| MspI | CCGG | 1 cut(s) | 2005 |
| MspR9I | CCNGG | 3 cut(s) | 1002, 1435, 2006 |
| MunI | CAATTG | 5 cut(s) | 511, 747, 1096, 1765, 2356 |
| Mva1269I | GAATGC | 2 cut(s) | 1353, 1913 |
| MvaI | CCWGG | 2 cut(s) | 1002, 1435 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 418, 1781, 2371 |
| NciI | CCSGG | 1 cut(s) | 2006 |
| NcoI | CCATGG | 1 cut(s) | 2430 |
| NdeI | CATATG | 3 cut(s) | 1246, 1293, 1561 |
| NdeII | GATC | 6 cut(s) | 839, 1551, 1611, 1761, 2053, 2476 |
| NlaIV | GGNNCC | 1 cut(s) | 312 |
| NmeAIII | GCCGAG | 1 cut(s) | 1651 |
| NmuCI | GTSAC | 3 cut(s) | 624, 796, 984 |
| NsiI | ATGCAT | 1 cut(s) | 1246 |
| NspI | RCATGY | 4 cut(s) | 1999, 2020, 2086, 2212 |
| NspV | TTCGAA | 1 cut(s) | 537 |
| OliI | CACNNNNGTG | 1 cut(s) | 1232 |
| PceI | AGGCCT | 2 cut(s) | 861, 1064 |
| PciI | ACATGT | 3 cut(s) | 1995, 2016, 2082 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1495 |
| PctI | GAATGC | 2 cut(s) | 1353, 1913 |
| PdmI | GAANNNNTTC | 2 cut(s) | 434, 543 |
| PflFI | GACNNNGTC | 1 cut(s) | 2162 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 353 |
| PkrI | GCNGC | 6 cut(s) | 298, 414, 1138, 1389, 1591, 1693 |
| PleI | GAGTC | 4 cut(s) | 109, 134, 631, 2341 |
| PpsI | GAGTC | 4 cut(s) | 109, 134, 631, 2341 |
| PscI | ACATGT | 3 cut(s) | 1995, 2016, 2082 |
| PsiI | TTATAA | 1 cut(s) | 2172 |
| Psp6I | CCWGG | 2 cut(s) | 1000, 1433 |
| PspFI | CCCAGC | 1 cut(s) | 1845 |
| PspGI | CCWGG | 2 cut(s) | 1000, 1433 |
| PspN4I | GGNNCC | 1 cut(s) | 312 |
| PspPI | GGNCC | 3 cut(s) | 310, 499, 2131 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1007, 1700 |
| PsuI | RGATCY | 1 cut(s) | 2053 |
| PsyI | GACNNNGTC | 1 cut(s) | 2162 |
| RsaI | GTAC | 7 cut(s) | 10, 727, 916, 999, 1327, 1601, 2024 |
| RsaNI | GTAC | 7 cut(s) | 9, 726, 915, 998, 1326, 1600, 2023 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1232, 1479 |
| SaqAI | TTAA | 9 cut(s) | 206, 557, 578, 759, 980, 1076, 1542, 1856, 2451 |
| SatI | GCNGC | 6 cut(s) | 297, 413, 1137, 1388, 1590, 1692 |
| Sau3AI | GATC | 6 cut(s) | 839, 1551, 1611, 1761, 2053, 2476 |
| Sau96I | GGNCC | 3 cut(s) | 310, 499, 2131 |
| SchI | GAGTC | 4 cut(s) | 109, 134, 632, 2341 |
| ScrFI | CCNGG | 3 cut(s) | 1002, 1435, 2006 |
| SduI | GDGCHC | 4 cut(s) | 526, 1420, 1894, 2208 |
| SfaNI | GCATC | 6 cut(s) | 286, 650, 1099, 1181, 1576, 1959 |
| SfcI | CTRYAG | 1 cut(s) | 666 |
| SfuI | TTCGAA | 1 cut(s) | 537 |
| SinI | GGWCC | 2 cut(s) | 310, 499 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1232, 1479 |
| SmlI | CTYRAG | 2 cut(s) | 556, 1066 |
| SmoI | CTYRAG | 2 cut(s) | 556, 1066 |
| SseBI | AGGCCT | 2 cut(s) | 861, 1064 |
| SsiI | CCGC | 3 cut(s) | 296, 1046, 2503 |
| SspMI | CTAG | 4 cut(s) | 1181, 1842, 1986, 2162 |
| StuI | AGGCCT | 2 cut(s) | 861, 1064 |
| StyD4I | CCNGG | 3 cut(s) | 1000, 1433, 2004 |
| StyI | CCWWGG | 2 cut(s) | 1342, 2430 |
| TaaI | ACNGT | 6 cut(s) | 919, 1009, 1234, 1427, 1569, 2179 |
| TaiI | ACGT | 1 cut(s) | 745 |
| TaqI | TCGA | 5 cut(s) | 537, 691, 838, 1498, 1967 |
| TatI | WGTACW | 1 cut(s) | 2022 |
| TauI | GCSGC | 1 cut(s) | 299 |
| Tru1I | TTAA | 9 cut(s) | 206, 557, 578, 759, 980, 1076, 1542, 1856, 2451 |
| Tru9I | TTAA | 9 cut(s) | 206, 557, 578, 759, 980, 1076, 1542, 1856, 2451 |
| TscAI | CASTG | 4 cut(s) | 1561, 1899, 2182, 2397 |
| TseFI | GTSAC | 3 cut(s) | 624, 796, 984 |
| TseI | GCWGC | 5 cut(s) | 412, 1136, 1387, 1589, 1691 |
| Tsp45I | GTSAC | 3 cut(s) | 624, 796, 984 |
| TspDTI | ATGAA | 7 cut(s) | 753, 1310, 1415, 1520, 1743, 1755, 2343 |
| TspRI | CASTG | 4 cut(s) | 1561, 1899, 2182, 2397 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2162 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 353 |
| Vha464I | CTTAAG | 1 cut(s) | 556 |
| VpaK11BI | GGWCC | 2 cut(s) | 310, 499 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 866 |
| XapI | RAATTY | 9 cut(s) | 80, 249, 316, 568, 609, 852, 893, 1818, 2226 |
| XceI | RCATGY | 4 cut(s) | 1999, 2020, 2086, 2212 |
| XmiI | GTMKAC | 1 cut(s) | 1710 |
| XmnI | GAANNNNTTC | 2 cut(s) | 434, 543 |
| XspI | CTAG | 4 cut(s) | 1181, 1842, 1986, 2162 |
| Zsp2I | ATGCAT | 1 cut(s) | 1246 |