Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016819

Physical Location & Seq

Genomic Coordinates Reverse (-)

7686892 .. 7687824

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCCAGCGCCACCACCACGGCCACCAAAGCTATGTCGAAGTCATCGACATCGAGTGCTAAAGCAGCACTTCGGAGGTTTGTTGGGGTTCGGCAAAGACCTTCCGGGAGGTGGGTAGCCGAAATCAAGGACTCTTCTCAACGTGTAAGGCTTTGGCTCGGAACCTACGACACTCCTGAAGAGGCAGCAAGAGCCTATGATGAAGCTGCTAGAGCTCTACGTGGTGAAAACGCCCGTACAAACTTTGCAGCACCGGCGGGCAACCCTGACAGCAACTCGAGCCTTTTGGCTAACTCTTGTCCCAATCCGAATGGCACTTTTATGCCTTCTGGTTTATCTGATGGACGTCACGGCGGGGGACAAGGACTTAGCTTTTCTTCCTTGAAGGCCAAGCTAAGCAAGAACCTCCAAAGCATTATGGCAAGGAGTAGTGATCACCATAACAAGTCCTCTAAAAGTAGGGTGAGTGACCACTTCACTTTTGCAAGTATATTTCACTTCAGAAAGTATCAGCAATACCAAAACAACCCAGTAAATCCTTTGTTCGACATGAAGAACATAGAAAAAGTAGTACAGCCTAGCATCATTGTGCCCCATGCTGCAGAAACTAGTACTCTTATTGTTCCCCATGCTGGAGAAACTAGTACTAGTACTAGCACTGAGCCTTCATCCTGGGAAAGTTCTAGTATTTCGGATTGTAGCGACTGGGGTTACAGCTTCAGGCAACGGGGGATGGACTCTGACGGGTCGGATCTTGGGGATGGGTTCATGGATCAAATCATGGGGTGGATGGATAGTCCAGATCAGATGAGTAGCGCTAGCGTTACTGTTGGTGATGATTGTGAGGAGGGGTCAAGGAGTAAGAGGTTCAAGGTTTCTTCTTCTGTGATGGTGCCTTCAACATTTGCTGGATCGCCATACAATAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

311

Amino Acids

33.54

Weight (kDa)

8.39

Isoelectric Point (pI)

59.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	26 - 75	6.4e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016819)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08080
malus_domestica	MD13G1252600.v1.1 MD16G1256800.v1.1
prunus_persica	Prupe.1G084800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0401791
rosa_laevigata	RLG00000009120
rosa_multiflora	Rmu_sc0001405.1_g000029
rosa_roxburghii	Rroxscaffold_5G00346350
rosa_rugosa	Rorug04G0032800
rosa_samantha	Rh4AG109200 Rh4BG103400 Rh4CG117400 Rh4DG101200
rosa_wichuraiana	Rw4G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	892
AciI	CCGC	2 cut(s)	257, 354
AclWI	GGATC	3 cut(s)	759, 780, 919
AcoI	YGGCCR	2 cut(s)	3, 21
AcuI	CTGAAG	3 cut(s)	198, 484, 703
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	5 cut(s)	238, 573, 613, 646, 652
AfeI	AGCGCT	1 cut(s)	817
AfiI	CCNNNNNNNGG	2 cut(s)	111, 632
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	385, 871, 900
AhlI	ACTAGT	3 cut(s)	608, 641, 647
AjnI	CCWGG	1 cut(s)	671
AluBI	AGCT	6 cut(s)	32, 206, 215, 372, 394, 717
AluI	AGCT	6 cut(s)	32, 206, 215, 372, 394, 717
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	759, 780, 919
Ama87I	CYCGRG	1 cut(s)	277
Aor51HI	AGCGCT	1 cut(s)	817
AoxI	GGCC	3 cut(s)	3, 21, 387
ApeKI	GCWGC	5 cut(s)	65, 185, 206, 248, 599
AspLEI	GCGC	2 cut(s)	11, 818
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	4 cut(s)	236, 428, 475, 845
AsuNHI	GCTAGC	1 cut(s)	818
AvaI	CYCGRG	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	594
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	892
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	5 cut(s)	77, 193, 197, 260, 586
BccI	CCATC	5 cut(s)	335, 727, 755, 784, 883
BceAI	ACGGC	2 cut(s)	36, 367
BciT130I	CCWGG	1 cut(s)	673
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	106
BcuI	ACTAGT	3 cut(s)	608, 641, 647
BfaI	CTAG	8 cut(s)	210, 579, 609, 642, 648, 654, 684, 819
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	2 cut(s)	12, 819
BisI	GCNGC	5 cut(s)	66, 186, 207, 249, 600
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	5 cut(s)	67, 187, 208, 250, 601
BmcAI	AGTACT	3 cut(s)	613, 646, 652
Bme1390I	CCNGG	2 cut(s)	106, 673
BmeT110I	CYCGRG	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	163, 894
BmrFI	CCNGG	2 cut(s)	106, 673
BmrI	ACTGGG	2 cut(s)	524, 715
BmsI	GCATC	1 cut(s)	591
BmtI	GCTAGC	1 cut(s)	822
BmuI	ACTGGG	2 cut(s)	524, 715
BpmI	CTGGAG	1 cut(s)	654
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	18, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 632
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	530, 710
BseBI	CCWGG	1 cut(s)	673
BseDI	CCNNGG	2 cut(s)	18, 672
BseGI	GGATG	4 cut(s)	668, 738, 766, 795
BseLI	CCNNNNNNNGG	2 cut(s)	111, 632
BseMII	CTCAG	1 cut(s)	651
BseNI	ACTGG	2 cut(s)	530, 710
BseRI	GAGGAG	1 cut(s)	860
BseSI	GKGCMC	1 cut(s)	594
BseXI	GCAGC	5 cut(s)	77, 193, 197, 260, 586
BshFI	GGCC	3 cut(s)	5, 23, 389
BshNI	GGYRCC	1 cut(s)	892
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	105, 254
BslFI	GGGAC	2 cut(s)	285, 372
BslI	CCNNNNNNNGG	2 cut(s)	111, 632
BsmFI	GGGAC	2 cut(s)	285, 372
BsnI	GGCC	3 cut(s)	5, 23, 389
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	217, 594
Bsp143I	GATC	5 cut(s)	433, 751, 772, 802, 911
Bsp1720I	GCTNAGC	1 cut(s)	395
BspACI	CCGC	2 cut(s)	257, 354
BspANI	GGCC	3 cut(s)	5, 23, 389
BspCNI	CTCAG	1 cut(s)	652
BspLI	GGNNCC	2 cut(s)	163, 894
BspMAI	CTGCAG	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	822
BspPI	GGATC	3 cut(s)	759, 780, 919
BspT107I	GGYRCC	1 cut(s)	892
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	530, 710
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	18, 672
BssMI	GATC	5 cut(s)	433, 751, 772, 802, 911
BssNI	GRCGYC	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	673
Bst4CI	ACNGT	1 cut(s)	829
Bst6I	CTCTTC	2 cut(s)	139, 174
BstACI	GRCGYC	1 cut(s)	346
BstBAI	YACGTR	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	7, 259, 820
BstDEI	CTNAG	3 cut(s)	368, 395, 660
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	4 cut(s)	668, 738, 766, 795
BstH2I	RGCGCY	2 cut(s)	12, 819
BstHHI	GCGC	2 cut(s)	11, 818
BstKTI	GATC	5 cut(s)	436, 754, 775, 805, 914
BstMBI	GATC	5 cut(s)	433, 751, 772, 802, 911
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 65, 191, 212, 254, 279
BstNI	CCWGG	1 cut(s)	673
BstSCI	CCNGG	2 cut(s)	104, 671
BstSFI	CTRYAG	1 cut(s)	600
BstSLI	GKGCMC	1 cut(s)	594
BstV1I	GCAGC	5 cut(s)	77, 193, 197, 260, 586
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	5, 23, 389
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	4 cut(s)	668, 738, 766, 795
BtsIMutI	CAGTG	1 cut(s)	657
Cac8I	GCNNGC	3 cut(s)	7, 259, 820
CfoI	GCGC	2 cut(s)	11, 818
Cfr10I	RCCGGY	1 cut(s)	253
Csp6I	GTAC	5 cut(s)	237, 572, 612, 645, 651
CviAII	CATG	5 cut(s)	550, 596, 629, 769, 781
CviQI	GTAC	5 cut(s)	237, 572, 612, 645, 651
DdeI	CTNAG	3 cut(s)	368, 395, 660
DpnI	GATC	5 cut(s)	435, 753, 774, 804, 913
DpnII	GATC	5 cut(s)	433, 751, 772, 802, 911
EaeI	YGGCCR	2 cut(s)	3, 21
Eam1104I	CTCTTC	2 cut(s)	139, 174
EarI	CTCTTC	2 cut(s)	139, 174
Ecl136II	GAGCTC	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	217
Eco47III	AGCGCT	1 cut(s)	817
Eco53kI	GAGCTC	1 cut(s)	215
Eco57I	CTGAAG	3 cut(s)	198, 484, 703
Eco88I	CYCGRG	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	671
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	5 cut(s)	553, 599, 632, 772, 784
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	2 cut(s)	285, 372
FatI	CATG	5 cut(s)	549, 595, 628, 768, 780
FauI	CCCGC	2 cut(s)	250, 347
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	5 cut(s)	66, 186, 207, 249, 600
FokI	GGATG	4 cut(s)	655, 745, 773, 802
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	5 cut(s)	66, 186, 207, 249, 600
FspBI	CTAG	8 cut(s)	210, 579, 609, 642, 648, 654, 684, 819
GlaI	GCGC	2 cut(s)	10, 817
GluI	GCNGC	5 cut(s)	66, 186, 207, 249, 600
GsuI	CTGGAG	1 cut(s)	654
HaeII	RGCGCY	2 cut(s)	12, 819
HaeIII	GGCC	3 cut(s)	5, 23, 389
HapII	CCGG	2 cut(s)	105, 254
HhaI	GCGC	2 cut(s)	11, 818
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	5 cut(s)	553, 599, 632, 772, 784
Hin6I	GCGC	2 cut(s)	9, 816
HinP1I	GCGC	2 cut(s)	9, 816
HinfI	GANTC	2 cut(s)	131, 737
HpaII	CCGG	2 cut(s)	105, 254
HphI	GGTGA	4 cut(s)	236, 428, 475, 845
Hpy188I	TCNGA	9 cut(s)	75, 161, 309, 340, 503, 694, 742, 751, 807
Hpy188III	TCNNGA	2 cut(s)	176, 800
HpyAV	CCTTC	5 cut(s)	111, 336, 379, 675, 906
HpyCH4III	ACNGT	1 cut(s)	829
HpyCH4IV	ACGT	3 cut(s)	142, 220, 346
HpyCH4V	TGCA	3 cut(s)	248, 485, 602
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 65, 191, 212, 254, 279
HpyF3I	CTNAG	3 cut(s)	368, 395, 660
HpySE526I	ACGT	3 cut(s)	142, 220, 346
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	5 cut(s)	553, 599, 632, 772, 784
HspAI	GCGC	2 cut(s)	9, 816
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	433, 751, 772, 802, 911
Lsp1109I	GCAGC	5 cut(s)	77, 193, 197, 260, 586
LweI	GCATC	1 cut(s)	591
MaeI	CTAG	8 cut(s)	210, 579, 609, 642, 648, 654, 684, 819
MaeII	ACGT	3 cut(s)	142, 220, 346
MaeIII	GTNAC	4 cut(s)	347, 467, 710, 823
MalI	GATC	5 cut(s)	435, 753, 774, 804, 913
MboI	GATC	5 cut(s)	433, 751, 772, 802, 911
MboII	GAAGA	6 cut(s)	126, 191, 369, 565, 870, 873
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	2 cut(s)	217, 594
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	928
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	125, 731
MmeI	TCCRAC	1 cut(s)	729
MnlI	CCTC	8 cut(s)	69, 102, 175, 416, 460, 838, 841, 858
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	320, 587
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	105, 254
MspR9I	CCNGG	2 cut(s)	106, 673
MvaI	CCWGG	1 cut(s)	673
MwoI	GCNNNNNNNGC	6 cut(s)	29, 65, 191, 212, 254, 279
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	5 cut(s)	433, 751, 772, 802, 911
NheI	GCTAGC	1 cut(s)	818
NlaIII	CATG	5 cut(s)	553, 599, 632, 772, 784
NlaIV	GGNNCC	2 cut(s)	163, 894
NmuCI	GTSAC	2 cut(s)	347, 467
PaeR7I	CTCGAG	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 165
PfoI	TCCNGGA	1 cut(s)	104
PkrI	GCNGC	5 cut(s)	67, 187, 208, 250, 601
PleI	GAGTC	2 cut(s)	125, 731
PpsI	GAGTC	2 cut(s)	125, 731
Ppu21I	YACGTR	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	671
PspN4I	GGNNCC	2 cut(s)	163, 894
PspXI	VCTCGAGB	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	751
RsaI	GTAC	5 cut(s)	238, 573, 613, 646, 652
RsaNI	GTAC	5 cut(s)	237, 572, 612, 645, 651
RseI	CAYNNNNRTG	2 cut(s)	320, 587
SacI	GAGCTC	1 cut(s)	217
SatI	GCNGC	5 cut(s)	66, 186, 207, 249, 600
Sau3AI	GATC	5 cut(s)	433, 751, 772, 802, 911
ScaI	AGTACT	3 cut(s)	613, 646, 652
SchI	GAGTC	2 cut(s)	125, 731
ScrFI	CCNGG	2 cut(s)	106, 673
SduI	GDGCHC	2 cut(s)	217, 594
SfaNI	GCATC	1 cut(s)	591
SfcI	CTRYAG	1 cut(s)	600
Sfr274I	CTCGAG	1 cut(s)	277
SgrAI	CRCCGGYG	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	277
SmiMI	CAYNNNNRTG	2 cut(s)	320, 587
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SpeI	ACTAGT	3 cut(s)	608, 641, 647
Sse9I	AATT	1 cut(s)	928
SsiI	CCGC	2 cut(s)	257, 354
SspMI	CTAG	8 cut(s)	210, 579, 609, 642, 648, 654, 684, 819
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	2 cut(s)	104, 671
TaaI	ACNGT	1 cut(s)	829
TaiI	ACGT	3 cut(s)	145, 223, 349
TaqI	TCGA	5 cut(s)	38, 47, 53, 278, 546
TasI	AATT	1 cut(s)	928
TatI	WGTACW	4 cut(s)	571, 611, 644, 650
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	2 cut(s)	347, 467
TseI	GCWGC	5 cut(s)	65, 185, 206, 248, 599
Tsp45I	GTSAC	2 cut(s)	347, 467
TspDTI	ATGAA	4 cut(s)	216, 566, 657, 757
TspRI	CASTG	1 cut(s)	664
XhoI	CTCGAG	1 cut(s)	277
XspI	CTAG	8 cut(s)	210, 579, 609, 642, 648, 654, 684, 819
ZraI	GACGTC	1 cut(s)	347
ZrmI	AGTACT	3 cut(s)	613, 646, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.