Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016819

Physical Location & Seq

Genomic Coordinates Reverse (-)

26983243 .. 26984175

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1252600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCAGGACCTCAAGCTCTCACAAAAACCACTATTGCCGCCGCCACCACCACCACCAACAAAAACATGCTGACGAAATCACCATCAAGCACTAAAACTGCACTCCGGAGGTTTGTTGGGGTTAGGCAAAGGCCATCTGGAAGATGGGTAGCAGAGATCAAGGACTCATCCCAACGTGTGAGGCTATGGCTAGGCACTTATGACACACCTGAAGAAGCAGCAAGAGCTTATGATGAAGCTGCTAGAGCATTACGTGGCGAAAACGCCCGCACCAACTTTGCGCCCCCCGGTCCAGCCACAAACCCTAACTCAAGTCCATTGGTCTCTAGTGCTTCCAATGGGAGCTTTGTGTCGGGGTCTGATGGCCGCCATGGTGGTGCAGGGCTTAGCTTCTCTTCCTTGAAGGCCAAGTTAAGCAAGAACCTCCAAAGTATCATGGCTAGGAGTAGTGATCATAACAGGTCCTCAAAAAGCAGGGTGAGTGACCACTTCACTTTTGCAAGTATTTTCCACTTTAGGAAATACCAATACCAAAACACAGTAAACCCTTTAATTGATATGAAGAATATAGAGAAAGTGGTGCAGCCTAGCATCATAGTGCCCCATAATAATGGAGAGAGTACTACTAGTACTGAGCCTTCCTCTTGGGAGAACTCTAGTATTTCGGACTGCAGCGCCGAGTGGGCCCACGGGTTACGGCAAGTAGGGGTGGATTATGAAGGGTCTGAAATTGGGGAAGGGAGTATCATGGACCAAATTATGGGGTGGATGGATAGTCCAGATAATCAGTTGGGTAGTCGGATTAACCTTGGTGATGATAGTGAGGAGGGTTCGAGGAGTAAGAGGTTCAAGGTTTCCTCTTCAGTGATGGTTCCTCCGACATTTAGTACCGGATCTCCATTCAATAATAATAATGGAGAAATTTCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

311

Amino Acids

33.57

Weight (kDa)

9.16

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	37 - 86	6.4e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016819)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08080
malus_domestica	MD13G1252600.v1.1 MD16G1256800.v1.1
prunus_persica	Prupe.1G084800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0401791
rosa_laevigata	RLG00000009120
rosa_multiflora	Rmu_sc0001405.1_g000029
rosa_roxburghii	Rroxscaffold_5G00346350
rosa_rugosa	Rorug04G0032800
rosa_samantha	Rh4AG109200 Rh4BG103400 Rh4CG117400 Rh4DG101200
rosa_wichuraiana	Rw4G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccIII	TCCGGA	1 cut(s)	105
AciI	CCGC	4 cut(s)	39, 42, 268, 367
AclWI	GGATC	1 cut(s)	901
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	921
AcuI	CTGAAG	2 cut(s)	231, 846
AfaI	GTAC	3 cut(s)	622, 631, 889
AfiI	CCNNNNNNNGG	1 cut(s)	760
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	403, 850, 904
AhlI	ACTAGT	1 cut(s)	626
AluBI	AGCT	5 cut(s)	17, 227, 239, 345, 390
AluI	AGCT	5 cut(s)	17, 227, 239, 345, 390
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	1 cut(s)	901
Aor13HI	TCCGGA	1 cut(s)	105
AoxI	GGCC	4 cut(s)	131, 364, 405, 684
ApaI	GGGCCC	1 cut(s)	688
ApeKI	GCWGC	4 cut(s)	218, 239, 583, 672
ApoI	RAATTY	1 cut(s)	921
AspLEI	GCGC	2 cut(s)	283, 677
AspS9I	GGNCC	6 cut(s)	8, 290, 462, 684, 685, 751
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	3 cut(s)	72, 490, 824
AsuII	TTCGAA	1 cut(s)	926
AvaII	GGWCC	4 cut(s)	8, 290, 462, 751
BaeGI	GKGCMC	2 cut(s)	603, 688
BanII	GRGCYC	1 cut(s)	688
BarI	GAAGNNNNNNTAC	2 cut(s)	622, 654
BbvI	GCAGC	4 cut(s)	226, 230, 595, 684
BccI	CCATC	6 cut(s)	91, 138, 142, 356, 763, 862
BceAI	ACGGC	1 cut(s)	713
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	328
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	7 cut(s)	191, 243, 327, 441, 588, 627, 657
BfmI	CTRYAG	1 cut(s)	670
BfoI	RGCGCY	1 cut(s)	678
BglI	GCCNNNNNGGC	1 cut(s)	683
BisI	GCNGC	7 cut(s)	39, 42, 219, 240, 367, 584, 673
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	7 cut(s)	40, 43, 220, 241, 368, 585, 674
BmcAI	AGTACT	2 cut(s)	622, 631
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	4 cut(s)	8, 290, 462, 751
BmgT120I	GGNCC	6 cut(s)	8, 290, 462, 684, 685, 751
BmiI	GGNNCC	2 cut(s)	686, 873
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	600
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
Bpu1102I	GCTNAGC	1 cut(s)	386
Bpu14I	TTCGAA	1 cut(s)	926
BpuEI	CTTGAG	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	4 cut(s)	286, 370, 688, 808
BsaWI	WCCGGW	2 cut(s)	105, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	880, 910
Bsc4I	CCNNNNNNNGG	1 cut(s)	760
BseAI	TCCGGA	1 cut(s)	105
BseDI	CCNNGG	4 cut(s)	286, 370, 688, 808
BseGI	GGATG	2 cut(s)	167, 774
BseLI	CCNNNNNNNGG	1 cut(s)	760
BseMII	CTCAG	1 cut(s)	624
BseRI	GAGGAG	2 cut(s)	839, 850
BseSI	GKGCMC	2 cut(s)	603, 688
BseXI	GCAGC	4 cut(s)	226, 230, 595, 684
BsgI	GTGCAG	3 cut(s)	84, 399, 602
BshFI	GGCC	4 cut(s)	133, 366, 407, 686
BsiSI	CCGG	3 cut(s)	106, 288, 891
BslI	CCNNNNNNNGG	1 cut(s)	760
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	133, 366, 407, 686
Bso31I	GGTCTC	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	926
Bsp120I	GGGCCC	1 cut(s)	684
Bsp1286I	GDGCHC	2 cut(s)	603, 688
Bsp13I	TCCGGA	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	156, 451, 893
Bsp1720I	GCTNAGC	1 cut(s)	386
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	4 cut(s)	39, 42, 268, 367
BspANI	GGCC	4 cut(s)	133, 366, 407, 686
BspCNI	CTCAG	1 cut(s)	625
BspEI	TCCGGA	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	686, 873
BspMAI	CTGCAG	1 cut(s)	674
BspPI	GGATC	1 cut(s)	901
BspT104I	TTCGAA	1 cut(s)	926
BspTNI	GGTCTC	1 cut(s)	328
BssECI	CCNNGG	4 cut(s)	286, 370, 688, 808
BssMI	GATC	3 cut(s)	156, 451, 893
BssT1I	CCWWGG	2 cut(s)	370, 808
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	2 cut(s)	400, 865
BstBAI	YACGTR	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	926
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	386, 633
BstDSI	CCRYGG	2 cut(s)	370, 688
BstF5I	GGATG	2 cut(s)	167, 774
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	283, 677
BstKTI	GATC	3 cut(s)	159, 454, 896
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	3 cut(s)	156, 451, 893
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 245, 683
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	670
BstSLI	GKGCMC	2 cut(s)	603, 688
BstV1I	GCAGC	4 cut(s)	226, 230, 595, 684
BstX2I	RGATCY	1 cut(s)	893
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	893
BsuRI	GGCC	4 cut(s)	133, 366, 407, 686
BtgI	CCRYGG	2 cut(s)	370, 688
BtsCI	GGATG	2 cut(s)	167, 774
BtsIMutI	CAGTG	1 cut(s)	870
Cac8I	GCNNGC	1 cut(s)	268
CfoI	GCGC	2 cut(s)	283, 677
Cfr13I	GGNCC	6 cut(s)	8, 290, 462, 684, 685, 751
Csp6I	GTAC	3 cut(s)	621, 630, 888
CviAII	CATG	4 cut(s)	67, 371, 436, 748
CviQI	GTAC	3 cut(s)	621, 630, 888
DdeI	CTNAG	2 cut(s)	386, 633
DpnI	GATC	3 cut(s)	158, 453, 895
DpnII	GATC	3 cut(s)	156, 451, 893
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	400, 865
EarI	CTCTTC	2 cut(s)	400, 865
Eco130I	CCWWGG	2 cut(s)	370, 808
Eco24I	GRGCYC	1 cut(s)	688
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	4 cut(s)	8, 290, 462, 751
Eco57I	CTGAAG	2 cut(s)	231, 846
EcoO109I	RGGNCCY	2 cut(s)	8, 462
EcoT14I	CCWWGG	2 cut(s)	370, 808
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	2 cut(s)	370, 808
FaeI	CATG	4 cut(s)	70, 374, 439, 751
FatI	CATG	4 cut(s)	66, 370, 435, 747
FauI	CCCGC	1 cut(s)	275
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	7 cut(s)	39, 42, 219, 240, 367, 584, 673
FokI	GGATG	2 cut(s)	154, 781
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	7 cut(s)	39, 42, 219, 240, 367, 584, 673
FspBI	CTAG	7 cut(s)	191, 243, 327, 441, 588, 627, 657
GlaI	GCGC	2 cut(s)	282, 676
GluI	GCNGC	7 cut(s)	39, 42, 219, 240, 367, 584, 673
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	4 cut(s)	133, 366, 407, 686
HapII	CCGG	3 cut(s)	106, 288, 891
HhaI	GCGC	2 cut(s)	283, 677
Hin1II	CATG	4 cut(s)	70, 374, 439, 751
Hin6I	GCGC	2 cut(s)	281, 675
HinP1I	GCGC	2 cut(s)	281, 675
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	3 cut(s)	106, 288, 891
HphI	GGTGA	3 cut(s)	72, 490, 824
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	5 cut(s)	361, 667, 727, 801, 879
Hpy188III	TCNNGA	3 cut(s)	106, 138, 779
Hpy8I	GTNNAC	1 cut(s)	544
HpyAV	CCTTC	4 cut(s)	397, 648, 713, 731
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	2 cut(s)	175, 253
HpyCH4V	TGCA	5 cut(s)	101, 380, 500, 583, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 245, 683
HpyF3I	CTNAG	2 cut(s)	386, 633
HpySE526I	ACGT	2 cut(s)	175, 253
Hsp92II	CATG	4 cut(s)	70, 374, 439, 751
HspAI	GCGC	2 cut(s)	281, 675
Kpn2I	TCCGGA	1 cut(s)	105
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	3 cut(s)	156, 451, 893
LmnI	GCTCC	1 cut(s)	342
Lsp1109I	GCAGC	4 cut(s)	226, 230, 595, 684
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	7 cut(s)	191, 243, 327, 441, 588, 627, 657
MaeII	ACGT	2 cut(s)	175, 253
MaeIII	GTNAC	2 cut(s)	482, 693
MalI	GATC	3 cut(s)	158, 453, 895
MboI	GATC	3 cut(s)	156, 451, 893
MboII	GAAGA	5 cut(s)	153, 224, 387, 574, 852
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	2 cut(s)	603, 688
MluCI	AATT	5 cut(s)	552, 729, 756, 921, 928
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	779, 902
MroI	TCCGGA	1 cut(s)	105
MseI	TTAA	3 cut(s)	413, 551, 804
MslI	CAYNNNNRTG	3 cut(s)	375, 596, 609
MspI	CCGG	3 cut(s)	106, 288, 891
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	224, 245, 683
NciI	CCSGG	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	3 cut(s)	156, 451, 893
NlaIII	CATG	4 cut(s)	70, 374, 439, 751
NlaIV	GGNNCC	2 cut(s)	686, 873
NmeAIII	GCCGAG	1 cut(s)	703
NmuCI	GTSAC	1 cut(s)	482
NspI	RCATGY	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	926
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	7 cut(s)	40, 43, 220, 241, 368, 585, 674
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Ppu21I	YACGTR	1 cut(s)	254
PpuMI	RGGWCCY	2 cut(s)	8, 462
Psp5II	RGGWCCY	2 cut(s)	8, 462
PspN4I	GGNNCC	2 cut(s)	686, 873
PspOMI	GGGCCC	1 cut(s)	684
PspPI	GGNCC	6 cut(s)	8, 290, 462, 684, 685, 751
PspPPI	RGGWCCY	2 cut(s)	8, 462
PstI	CTGCAG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	893
RsaI	GTAC	3 cut(s)	622, 631, 889
RsaNI	GTAC	3 cut(s)	621, 630, 888
RseI	CAYNNNNRTG	3 cut(s)	375, 596, 609
SaqAI	TTAA	3 cut(s)	413, 551, 804
SatI	GCNGC	7 cut(s)	39, 42, 219, 240, 367, 584, 673
Sau3AI	GATC	3 cut(s)	156, 451, 893
Sau96I	GGNCC	6 cut(s)	8, 290, 462, 684, 685, 751
ScaI	AGTACT	2 cut(s)	622, 631
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	2 cut(s)	603, 688
SfaNI	GCATC	1 cut(s)	600
SfcI	CTRYAG	1 cut(s)	670
SfuI	TTCGAA	1 cut(s)	926
SinI	GGWCC	4 cut(s)	8, 290, 462, 751
SmiMI	CAYNNNNRTG	3 cut(s)	375, 596, 609
SmlI	CTYRAG	2 cut(s)	12, 310
SmoI	CTYRAG	2 cut(s)	12, 310
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	5 cut(s)	552, 729, 756, 921, 928
SsiI	CCGC	4 cut(s)	39, 42, 268, 367
SspMI	CTAG	7 cut(s)	191, 243, 327, 441, 588, 627, 657
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	370, 808
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	2 cut(s)	178, 256
TaqI	TCGA	2 cut(s)	833, 926
TasI	AATT	5 cut(s)	552, 729, 756, 921, 928
TatI	WGTACW	2 cut(s)	620, 629
TauI	GCSGC	3 cut(s)	41, 44, 369
Tru1I	TTAA	3 cut(s)	413, 551, 804
Tru9I	TTAA	3 cut(s)	413, 551, 804
TscAI	CASTG	1 cut(s)	870
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	4 cut(s)	218, 239, 583, 672
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	249, 575, 732
TspRI	CASTG	1 cut(s)	870
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	4 cut(s)	8, 290, 462, 751
XapI	RAATTY	1 cut(s)	921
XceI	RCATGY	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XspI	CTAG	7 cut(s)	191, 243, 327, 441, 588, 627, 657
ZrmI	AGTACT	2 cut(s)	622, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.