Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016819

Physical Location & Seq

Genomic Coordinates Reverse (-)

17107894 .. 17108751

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCTAAGTCATCGACATCGAGTGCTAAAGCAGCACTTCGGAGGTTTGTTGGGGTTCGGCAAAGGCCTTCGGGGAGATGGGTAGCAGAAATCAAGGACTCTTCTCAACGTGTAAGGCTTTGGCTCGGAACCTACGACACTCCCGAAGAGGCAGCAAGAGCCTACGATGAAGCAGCTAGAGCCCTACGTGGTGAAAATGCCCGTACAAACTTTGCAACACCGGTGGCCAACCCTGACAATAACTTGAGCCTTTTGGCTAACTCTTGTCCTAATCCAAATGGCACTTTTATGCCTTCTGGGTTGTCCGATGGACGCCGCAGTGGGGGCCAAGGGCTAAGCTTTTCTTCTTTGAAGGCCAAGTTAAGCAAGAACCTCCAAAGCATCATGGCTAGGAGTAGTGATCATCATAACAAGTCCTCTAAAAGTAGGGTGAGTGATCACTTCACTTTTGCAAGCATATTCCACTTCAGAAAGTATCAGCAATACCAAAACAACCCAGTAAACCCTTTGTTCGATATGAAGAACATAGAGAAAGTGGTACAGCCTAGCATCATTGTGCCCCATGCTGGAGAAACTAGTACCAGCACTAGCACTGACCCTTCATCTTGGGAAAGTTCTAGTATTTCGGATTGTAGCGACTGGGGTTACAGCTTCAGGCAACCCGGGATGGACTCTGATGGGTCCGATCTTGGGGATGGGTTCATGGACCAAATTATGGGGTGGATGGATAGTCCAGATCAGATGAGTAGCGGTACTGTTGGTAATGATTGTGAGGAGGGGTCAAGGAGTAAGAGGTTCAAGGTTTCTTCTTCTGTAATGGTGCCTTCAACATTTGCTGGATCTCCATATAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

285

Amino Acids

31.17

Weight (kDa)

8.73

Isoelectric Point (pI)

63.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	15 - 64	5.6e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016819)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08080
malus_domestica	MD13G1252600.v1.1 MD16G1256800.v1.1
prunus_persica	Prupe.1G084800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0401791
rosa_laevigata	RLG00000009120
rosa_multiflora	Rmu_sc0001405.1_g000029
rosa_roxburghii	Rroxscaffold_5G00346350
rosa_rugosa	Rorug04G0032800
rosa_samantha	Rh4AG109200 Rh4BG103400 Rh4CG117400 Rh4DG101200
rosa_wichuraiana	Rw4G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	820
AccB7I	CCANNNNNTGG	1 cut(s)	715
AciI	CCGC	2 cut(s)	316, 750
AclWI	GGATC	1 cut(s)	847
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	2 cut(s)	451, 637
AcyI	GRCGYC	1 cut(s)	313
AfaI	GTAC	4 cut(s)	205, 540, 580, 754
AfiI	CCNNNNNNNGG	4 cut(s)	322, 566, 690, 715
AflIII	ACRYGT	1 cut(s)	109
AgeI	ACCGGT	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	352, 799, 828
AhlI	ACTAGT	1 cut(s)	575
AluBI	AGCT	3 cut(s)	176, 339, 651
AluI	AGCT	3 cut(s)	176, 339, 651
AlwI	GGATC	1 cut(s)	847
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	4 cut(s)	65, 225, 325, 354
ApeKI	GCWGC	3 cut(s)	32, 152, 173
AsiGI	ACCGGT	1 cut(s)	220
AspS9I	GGNCC	3 cut(s)	325, 681, 706
AsuC2I	CCSGG	2 cut(s)	663, 664
AsuHPI	GGTGA	2 cut(s)	203, 442
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	2 cut(s)	681, 706
BaeGI	GKGCMC	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	820
BanII	GRGCYC	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	44, 164, 185
BccI	CCATC	6 cut(s)	72, 302, 661, 671, 689, 718
BclI	TGATCA	2 cut(s)	400, 436
BcnI	CCSGG	2 cut(s)	663, 664
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	6 cut(s)	177, 390, 546, 576, 588, 618
BisI	GCNGC	4 cut(s)	33, 153, 174, 316
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	4 cut(s)	34, 154, 175, 317
Bme1390I	CCNGG	2 cut(s)	663, 664
Bme18I	GGWCC	2 cut(s)	681, 706
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	3 cut(s)	325, 681, 706
BmiI	GGNNCC	4 cut(s)	130, 326, 682, 822
BmrFI	CCNGG	2 cut(s)	663, 664
BmrI	ACTGGG	2 cut(s)	491, 649
BmsI	GCATC	2 cut(s)	390, 558
BmuI	ACTGGG	2 cut(s)	491, 649
BpmI	CTGGAG	1 cut(s)	588
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	265
BpuMI	CCSGG	2 cut(s)	663, 664
BsaAI	YACGTR	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	328, 662
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	4 cut(s)	322, 566, 690, 715
Bse118I	RCCGGY	1 cut(s)	220
Bse1I	ACTGG	2 cut(s)	497, 644
BseDI	CCNNGG	2 cut(s)	328, 662
BseGI	GGATG	3 cut(s)	672, 700, 729
BseLI	CCNNNNNNNGG	4 cut(s)	322, 566, 690, 715
BseNI	ACTGG	2 cut(s)	497, 644
BseRI	GAGGAG	1 cut(s)	788
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	3 cut(s)	44, 164, 185
BshFI	GGCC	4 cut(s)	67, 227, 327, 356
BshNI	GGYRCC	1 cut(s)	820
BshTI	ACCGGT	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	2 cut(s)	221, 663
BslI	CCNNNNNNNGG	4 cut(s)	322, 566, 690, 715
BsnI	GGCC	4 cut(s)	67, 227, 327, 356
BsoBI	CYCGRG	1 cut(s)	662
Bsp1286I	GDGCHC	2 cut(s)	184, 561
Bsp143I	GATC	5 cut(s)	400, 436, 685, 736, 839
Bsp1720I	GCTNAGC	1 cut(s)	335
BspACI	CCGC	2 cut(s)	316, 750
BspANI	GGCC	4 cut(s)	67, 227, 327, 356
BspLI	GGNNCC	4 cut(s)	130, 326, 682, 822
BspPI	GGATC	1 cut(s)	847
BspT107I	GGYRCC	1 cut(s)	820
BsrFI	RCCGGY	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	497, 644
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	328, 662
BssMI	GATC	5 cut(s)	400, 436, 685, 736, 839
BssNI	GRCGYC	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	757
Bst6I	CTCTTC	2 cut(s)	106, 141
BstACI	GRCGYC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	6, 335
BstF5I	GGATG	3 cut(s)	672, 700, 729
BstKTI	GATC	5 cut(s)	403, 439, 688, 739, 842
BstMBI	GATC	5 cut(s)	400, 436, 685, 736, 839
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 158, 179, 324
BstSCI	CCNGG	2 cut(s)	661, 662
BstSLI	GKGCMC	1 cut(s)	561
BstV1I	GCAGC	3 cut(s)	44, 164, 185
BstX2I	RGATCY	1 cut(s)	839
BstYI	RGATCY	1 cut(s)	839
BsuRI	GGCC	4 cut(s)	67, 227, 327, 356
BtsCI	GGATG	3 cut(s)	672, 700, 729
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	325, 591
Cac8I	GCNNGC	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	3 cut(s)	325, 681, 706
Cfr9I	CCCGGG	1 cut(s)	662
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	4 cut(s)	204, 539, 579, 753
CspAI	ACCGGT	1 cut(s)	220
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	3 cut(s)	385, 563, 703
CviQI	GTAC	4 cut(s)	204, 539, 579, 753
DdeI	CTNAG	2 cut(s)	6, 335
DpnI	GATC	5 cut(s)	402, 438, 687, 738, 841
DpnII	GATC	5 cut(s)	400, 436, 685, 736, 839
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	106, 141
EarI	CTCTTC	2 cut(s)	106, 141
Eco130I	CCWWGG	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	681, 706
Eco57I	CTGAAG	2 cut(s)	451, 637
Eco88I	CYCGRG	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	3 cut(s)	388, 566, 706
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 328, 360
FatI	CATG	3 cut(s)	384, 562, 702
FbaI	TGATCA	2 cut(s)	400, 436
Fnu4HI	GCNGC	4 cut(s)	33, 153, 174, 316
FokI	GGATG	3 cut(s)	679, 707, 736
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	4 cut(s)	33, 153, 174, 316
FspBI	CTAG	6 cut(s)	177, 390, 546, 576, 588, 618
GluI	GCNGC	4 cut(s)	33, 153, 174, 316
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	4 cut(s)	67, 227, 327, 356
HapII	CCGG	2 cut(s)	221, 663
HgaI	GACGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	313
Hin1II	CATG	3 cut(s)	388, 566, 706
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	2 cut(s)	98, 671
HpaII	CCGG	2 cut(s)	221, 663
HphI	GGTGA	2 cut(s)	203, 442
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	8 cut(s)	42, 128, 307, 470, 628, 676, 685, 741
Hpy188III	TCNNGA	2 cut(s)	143, 734
Hpy8I	GTNNAC	1 cut(s)	502
HpyAV	CCTTC	5 cut(s)	78, 303, 346, 609, 834
HpyCH4III	ACNGT	1 cut(s)	757
HpyCH4IV	ACGT	2 cut(s)	109, 187
HpyCH4V	TGCA	2 cut(s)	215, 452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 158, 179, 324
HpyF3I	CTNAG	2 cut(s)	6, 335
HpySE526I	ACGT	2 cut(s)	109, 187
Hsp92I	GRCGYC	1 cut(s)	313
Hsp92II	CATG	3 cut(s)	388, 566, 706
Ksp22I	TGATCA	2 cut(s)	400, 436
Kzo9I	GATC	5 cut(s)	400, 436, 685, 736, 839
Lsp1109I	GCAGC	3 cut(s)	44, 164, 185
LweI	GCATC	2 cut(s)	390, 558
MaeI	CTAG	6 cut(s)	177, 390, 546, 576, 588, 618
MaeII	ACGT	2 cut(s)	109, 187
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	5 cut(s)	402, 438, 687, 738, 841
MboI	GATC	5 cut(s)	400, 436, 685, 736, 839
MboII	GAAGA	6 cut(s)	93, 158, 336, 532, 798, 801
MflI	RGATCY	1 cut(s)	839
MhlI	GDGCHC	2 cut(s)	184, 561
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	2 cut(s)	711, 853
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	92, 665
MnlI	CCTC	7 cut(s)	36, 142, 383, 427, 766, 769, 786
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	2 cut(s)	287, 554
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	2 cut(s)	221, 663
MspR9I	CCNGG	2 cut(s)	663, 664
MwoI	GCNNNNNNNGC	4 cut(s)	32, 158, 179, 324
NciI	CCSGG	2 cut(s)	663, 664
NdeII	GATC	5 cut(s)	400, 436, 685, 736, 839
NlaIII	CATG	3 cut(s)	388, 566, 706
NlaIV	GGNNCC	4 cut(s)	130, 326, 682, 822
PceI	AGGCCT	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 141
PflMI	CCANNNNNTGG	1 cut(s)	715
PinAI	ACCGGT	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	34, 154, 175, 317
PleI	GAGTC	2 cut(s)	92, 665
PpsI	GAGTC	2 cut(s)	92, 665
Ppu21I	YACGTR	1 cut(s)	188
PspN4I	GGNNCC	4 cut(s)	130, 326, 682, 822
PspPI	GGNCC	3 cut(s)	325, 681, 706
PsuI	RGATCY	1 cut(s)	839
RsaI	GTAC	4 cut(s)	205, 540, 580, 754
RsaNI	GTAC	4 cut(s)	204, 539, 579, 753
RseI	CAYNNNNRTG	2 cut(s)	287, 554
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	4 cut(s)	33, 153, 174, 316
Sau3AI	GATC	5 cut(s)	400, 436, 685, 736, 839
Sau96I	GGNCC	3 cut(s)	325, 681, 706
SchI	GAGTC	2 cut(s)	92, 665
ScrFI	CCNGG	2 cut(s)	663, 664
SduI	GDGCHC	2 cut(s)	184, 561
SfaNI	GCATC	2 cut(s)	390, 558
SgrAI	CRCCGGYG	1 cut(s)	220
SinI	GGWCC	2 cut(s)	681, 706
SmaI	CCCGGG	1 cut(s)	664
SmiMI	CAYNNNNRTG	2 cut(s)	287, 554
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	2 cut(s)	711, 853
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	2 cut(s)	316, 750
SspMI	CTAG	6 cut(s)	177, 390, 546, 576, 588, 618
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	661, 662
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	757
TaiI	ACGT	2 cut(s)	112, 190
TaqI	TCGA	3 cut(s)	14, 20, 513
TasI	AATT	2 cut(s)	711, 853
TauI	GCSGC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	2 cut(s)	325, 598
TseI	GCWGC	3 cut(s)	32, 152, 173
TspDTI	ATGAA	4 cut(s)	183, 533, 591, 691
TspMI	CCCGGG	1 cut(s)	662
TspRI	CASTG	2 cut(s)	325, 598
Van91I	CCANNNNNTGG	1 cut(s)	715
VpaK11BI	GGWCC	2 cut(s)	681, 706
XmaI	CCCGGG	1 cut(s)	662
XspI	CTAG	6 cut(s)	177, 390, 546, 576, 588, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.