Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0016819

Physical Location & Seq

Genomic Coordinates Reverse (-)

29736983 .. 29737912

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1256800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGGAACCTGAAGTACTCACAAAAACCACTATTGCCACAAGCACCACCACCAATAACAAAAACATGCTGACGAAATCACCATCAAACACTAAAACTGCACTCCGGAGGTTTGTTGGGGTTAGGCAAAGGCCATCTGGAAGATGGGTAGCAGAGATCAAGGACTCATCCCAACGTGTGAGGCTATGGCTAGGCACTTATGACACACCTGAAGAAGCAGCAAGAGCTTATGATGAAGCTGCTAGAGCGTTGCGTGGCGAAAACGCTCGCACAAACTTTGCACCCCCCGGGCCAGCCACAAACCCTAACTCAAGCCCATTGGTTTCTTGTGCTTCCAGTGGGGGCTTTGTGTCGGGGTCTGATGGTCGTCATGCCGGTGCAGGGCTTAGCTTCTCTTCCTTCAAGGCCAAGTTAAGCAAGAACCTCCAAAGTATCATGGCTAGGAGTAGTGATCATAACAAGTCCTCAAAAAGTAGGGTGAGTGATCACTTCACTTTTGCAAGTATTTTCCACTTTAGGAAATACCAATATCAAAACACAGTAAACCCTTTAACTGATATGAAGAATATAGAGAAAGTGGTGCAGCCTAGCATAATAGTGCCCCATAATAATGGAGAGAGTAGTACTACTACTGAGCCTTCCTCTTGGGAGAACTCTAGTATTTCAGACTGCAGCGCCGAGTGGGCCCACGGGTTCCAGCAAGTAGGGGTGGATTCTGAAGGATCTGAAATTGGGGAAGGGAGTATCATGGACCAAATTATGGGGTGGATGGATAGTCCAGATAATCAGATAGGTCGGATTAGCCTTGGTGATGATAGTGAGGAGGGTTCAAGGAGTAAGAGGTTCAAGGTTTCCTCTTCAGTAATGGTTCCTCCGACATTTAGCACCGGATCTCCATTTAATAATAATGAGGGAGAAATTTCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

310

Amino Acids

33.56

Weight (kDa)

7.03

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	37 - 86	6.4e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016819)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08080
malus_domestica	MD13G1252600.v1.1 MD16G1256800.v1.1
prunus_persica	Prupe.1G084800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0401791
rosa_laevigata	RLG00000009120
rosa_multiflora	Rmu_sc0001405.1_g000029
rosa_roxburghii	Rroxscaffold_5G00346350
rosa_rugosa	Rorug04G0032800
rosa_samantha	Rh4AG109200 Rh4BG103400 Rh4CG117400 Rh4DG101200
rosa_wichuraiana	Rw4G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccIII	TCCGGA	1 cut(s)	105
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	730, 898
AcsI	RAATTY	1 cut(s)	918
AcuI	CTGAAG	4 cut(s)	33, 231, 738, 843
AfaI	GTAC	2 cut(s)	18, 625
AfiI	CCNNNNNNNGG	2 cut(s)	381, 760
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	403, 831, 847
AluBI	AGCT	3 cut(s)	227, 239, 390
AluI	AGCT	3 cut(s)	227, 239, 390
AlwI	GGATC	2 cut(s)	730, 898
Ama87I	CYCGRG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	105
AoxI	GGCC	4 cut(s)	131, 290, 405, 684
ApaI	GGGCCC	1 cut(s)	688
ApeKI	GCWGC	4 cut(s)	218, 239, 583, 672
ApoI	RAATTY	1 cut(s)	918
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	4 cut(s)	290, 684, 685, 751
AsuC2I	CCSGG	2 cut(s)	288, 289
AsuHPI	GGTGA	3 cut(s)	72, 490, 821
AsuII	TTCGAA	1 cut(s)	923
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	751
BaeGI	GKGCMC	2 cut(s)	603, 688
BanII	GRGCYC	1 cut(s)	688
BbvI	GCAGC	4 cut(s)	226, 230, 595, 684
BccI	CCATC	5 cut(s)	91, 138, 142, 356, 763
BclI	TGATCA	2 cut(s)	451, 484
BcnI	CCSGG	2 cut(s)	288, 289
BfaI	CTAG	5 cut(s)	191, 243, 441, 588, 657
BfmI	CTRYAG	1 cut(s)	670
BfoI	RGCGCY	1 cut(s)	678
BglI	GCCNNNNNGGC	1 cut(s)	683
BisI	GCNGC	4 cut(s)	219, 240, 584, 673
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	4 cut(s)	220, 241, 585, 674
BmcAI	AGTACT	2 cut(s)	18, 625
Bme1390I	CCNGG	2 cut(s)	288, 289
Bme18I	GGWCC	1 cut(s)	751
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	4 cut(s)	290, 684, 685, 751
BmiI	GGNNCC	4 cut(s)	9, 686, 695, 870
BmrFI	CCNGG	2 cut(s)	288, 289
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
Bpu1102I	GCTNAGC	1 cut(s)	386
Bpu14I	TTCGAA	1 cut(s)	923
BpuEI	CTTGAG	1 cut(s)	295
BpuMI	CCSGG	2 cut(s)	288, 289
BsaJI	CCNNGG	4 cut(s)	286, 287, 688, 805
BsaWI	WCCGGW	2 cut(s)	105, 887
BsaXI	ACNNNNNCTCC	2 cut(s)	877, 907
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 760
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	336
BseAI	TCCGGA	1 cut(s)	105
BseDI	CCNNGG	4 cut(s)	286, 287, 688, 805
BseGI	GGATG	2 cut(s)	167, 774
BseLI	CCNNNNNNNGG	2 cut(s)	381, 760
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	836
BseSI	GKGCMC	2 cut(s)	603, 688
BseXI	GCAGC	4 cut(s)	226, 230, 595, 684
BsgI	GTGCAG	3 cut(s)	84, 399, 602
BshFI	GGCC	4 cut(s)	133, 292, 407, 686
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	4 cut(s)	106, 288, 375, 888
BslI	CCNNNNNNNGG	2 cut(s)	381, 760
BsnI	GGCC	4 cut(s)	133, 292, 407, 686
BsoBI	CYCGRG	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	923
Bsp120I	GGGCCC	1 cut(s)	684
Bsp1286I	GDGCHC	2 cut(s)	603, 688
Bsp13I	TCCGGA	1 cut(s)	105
Bsp143I	GATC	5 cut(s)	156, 451, 484, 722, 890
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	4 cut(s)	133, 292, 407, 686
BspCNI	CTCAG	1 cut(s)	625
BspEI	TCCGGA	1 cut(s)	105
BspLI	GGNNCC	4 cut(s)	9, 686, 695, 870
BspMAI	CTGCAG	1 cut(s)	674
BspPI	GGATC	2 cut(s)	730, 898
BspT104I	TTCGAA	1 cut(s)	923
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	336
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	4 cut(s)	286, 287, 688, 805
BssMI	GATC	5 cut(s)	156, 451, 484, 722, 890
BssT1I	CCWWGG	1 cut(s)	805
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	2 cut(s)	400, 862
BstBI	TTCGAA	1 cut(s)	923
BstC8I	GCNNGC	2 cut(s)	268, 294
BstDEI	CTNAG	2 cut(s)	386, 633
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	2 cut(s)	167, 774
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	5 cut(s)	159, 454, 487, 725, 893
BstMBI	GATC	5 cut(s)	156, 451, 484, 722, 890
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 245, 683
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	286, 287
BstSFI	CTRYAG	1 cut(s)	670
BstSLI	GKGCMC	2 cut(s)	603, 688
BstV1I	GCAGC	4 cut(s)	226, 230, 595, 684
BstX2I	RGATCY	2 cut(s)	722, 890
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	2 cut(s)	722, 890
BsuRI	GGCC	4 cut(s)	133, 292, 407, 686
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	167, 774
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	2 cut(s)	268, 294
CfoI	GCGC	1 cut(s)	677
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	4 cut(s)	290, 684, 685, 751
Cfr9I	CCCGGG	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	17, 624
CviAII	CATG	4 cut(s)	67, 371, 436, 748
CviQI	GTAC	2 cut(s)	17, 624
DdeI	CTNAG	2 cut(s)	386, 633
DpnI	GATC	5 cut(s)	158, 453, 486, 724, 892
DpnII	GATC	5 cut(s)	156, 451, 484, 722, 890
Eam1104I	CTCTTC	2 cut(s)	400, 862
EarI	CTCTTC	2 cut(s)	400, 862
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	805
Eco24I	GRGCYC	1 cut(s)	688
Eco47I	GGWCC	1 cut(s)	751
Eco57I	CTGAAG	4 cut(s)	33, 231, 738, 843
Eco88I	CYCGRG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	805
FaeI	CATG	4 cut(s)	70, 374, 439, 751
FatI	CATG	4 cut(s)	66, 370, 435, 747
FbaI	TGATCA	2 cut(s)	451, 484
Fnu4HI	GCNGC	4 cut(s)	219, 240, 584, 673
FokI	GGATG	2 cut(s)	154, 781
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	4 cut(s)	219, 240, 584, 673
FspBI	CTAG	5 cut(s)	191, 243, 441, 588, 657
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	4 cut(s)	219, 240, 584, 673
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	4 cut(s)	133, 292, 407, 686
HapII	CCGG	4 cut(s)	106, 288, 375, 888
HhaI	GCGC	1 cut(s)	677
Hin1II	CATG	4 cut(s)	70, 374, 439, 751
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HinfI	GANTC	2 cut(s)	164, 713
HpaII	CCGG	4 cut(s)	106, 288, 375, 888
HphI	GGTGA	3 cut(s)	72, 490, 821
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	7 cut(s)	361, 667, 718, 727, 789, 798, 876
Hpy188III	TCNNGA	3 cut(s)	106, 138, 779
Hpy8I	GTNNAC	1 cut(s)	544
HpyAV	CCTTC	4 cut(s)	409, 648, 713, 731
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	6 cut(s)	101, 281, 380, 500, 583, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 245, 683
HpyF3I	CTNAG	2 cut(s)	386, 633
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	4 cut(s)	70, 374, 439, 751
HspAI	GCGC	1 cut(s)	675
Kpn2I	TCCGGA	1 cut(s)	105
Ksp22I	TGATCA	2 cut(s)	451, 484
Kzo9I	GATC	5 cut(s)	156, 451, 484, 722, 890
Lsp1109I	GCAGC	4 cut(s)	226, 230, 595, 684
MaeI	CTAG	5 cut(s)	191, 243, 441, 588, 657
MaeII	ACGT	1 cut(s)	175
MalI	GATC	5 cut(s)	158, 453, 486, 724, 892
MboI	GATC	5 cut(s)	156, 451, 484, 722, 890
MboII	GAAGA	5 cut(s)	153, 224, 387, 574, 849
MflI	RGATCY	2 cut(s)	722, 890
MhlI	GDGCHC	2 cut(s)	603, 688
MluCI	AATT	4 cut(s)	729, 756, 918, 925
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	776, 899
MroI	TCCGGA	1 cut(s)	105
MseI	TTAA	4 cut(s)	413, 551, 900, 928
MslI	CAYNNNNRTG	3 cut(s)	375, 596, 609
MspI	CCGG	4 cut(s)	106, 288, 375, 888
MspR9I	CCNGG	2 cut(s)	288, 289
MwoI	GCNNNNNNNGC	3 cut(s)	224, 245, 683
NciI	CCSGG	2 cut(s)	288, 289
NdeII	GATC	5 cut(s)	156, 451, 484, 722, 890
NlaIII	CATG	4 cut(s)	70, 374, 439, 751
NlaIV	GGNNCC	4 cut(s)	9, 686, 695, 870
NmeAIII	GCCGAG	1 cut(s)	703
NspI	RCATGY	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	923
PfeI	GAWTC	1 cut(s)	713
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	4 cut(s)	220, 241, 585, 674
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PspN4I	GGNNCC	4 cut(s)	9, 686, 695, 870
PspOMI	GGGCCC	1 cut(s)	684
PspPI	GGNCC	4 cut(s)	290, 684, 685, 751
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	674
PsuI	RGATCY	2 cut(s)	722, 890
RsaI	GTAC	2 cut(s)	18, 625
RsaNI	GTAC	2 cut(s)	17, 624
RseI	CAYNNNNRTG	3 cut(s)	375, 596, 609
SaqAI	TTAA	4 cut(s)	413, 551, 900, 928
SatI	GCNGC	4 cut(s)	219, 240, 584, 673
Sau3AI	GATC	5 cut(s)	156, 451, 484, 722, 890
Sau96I	GGNCC	4 cut(s)	290, 684, 685, 751
ScaI	AGTACT	2 cut(s)	18, 625
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	288, 289
SduI	GDGCHC	2 cut(s)	603, 688
SfcI	CTRYAG	1 cut(s)	670
SfuI	TTCGAA	1 cut(s)	923
SinI	GGWCC	1 cut(s)	751
SmaI	CCCGGG	1 cut(s)	289
SmiMI	CAYNNNNRTG	3 cut(s)	375, 596, 609
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	4 cut(s)	729, 756, 918, 925
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	5 cut(s)	191, 243, 441, 588, 657
StyD4I	CCNGG	2 cut(s)	286, 287
StyI	CCWWGG	1 cut(s)	805
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	923
TasI	AATT	4 cut(s)	729, 756, 918, 925
TatI	WGTACW	2 cut(s)	16, 623
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	4 cut(s)	413, 551, 900, 928
Tru9I	TTAA	4 cut(s)	413, 551, 900, 928
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	4 cut(s)	218, 239, 583, 672
TspDTI	ATGAA	2 cut(s)	249, 575
TspMI	CCCGGG	1 cut(s)	287
TspRI	CASTG	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	1 cut(s)	918
XceI	RCATGY	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XmaI	CCCGGG	1 cut(s)	287
XspI	CTAG	5 cut(s)	191, 243, 441, 588, 657
ZrmI	AGTACT	2 cut(s)	18, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.