Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0016819

Physical Location & Seq

Genomic Coordinates Reverse (-)

23667219 .. 23668477

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCAGGACCTGAGCTCACAAAAACCACTATCGCCACCGCCACCACCACCACAGCCACCAAAGCTATGTCTAAGTCATCGACATCGAGTGCTAAAGCAGCACTTCGGAGGTTTGTTGGGGTTCGGCAAAGGCCTTCGGGGAGATGGGTAGCCGAAATCAAGGACTCTTCTCAACGTGTACGGCTTTGGCTCGGAACCTACGACACTCCCGAAGAGGCAGCAAGAGCCTACGATGAAGCAGCTAGAGCCCTACGTGGTGAAAATGCCCGTACAAACTTTGCAACACCGGTGGCCAACCCTGACAATAACTTGAGCCTTTTGGCTAACTCTTGTCCTAATCCAAATGGCACTTTTATGCCTTCTGGGTTGTCCGATGGACGCCGCAGTGGGGGGCAAGGGCTAAGCTTTTCTTCTTTGAAGGCCAAGTTAAGCAAGAACCTCCAAAGCATCATGGCTAGGAGTAGTGATCATCATAACAAGTCCTCTAAAAGTAGGGTGAGTGATCACTTCACTTTTGCAAGCATATTCCACTTCAGAAAGTATCAGCAATACCAAAACAACCCGGTAAACCCTTTGTTCGATATGAAGAACATAGAGAAAGTGGTACAGCCTAGCATCATTGTGCCCCATGCTGGAGAAACTAGTACTAGCACTAGCACTGACCCTTCATCTTGGGAAAGTTCTAGTATTTCGGATTGTAGCGACTGGGGTTACAGCTTCAGGCAACCTGGGATGGACTCTGATGGGTCCGATCTTGGGGATGGGTTCATGGACCAAATTATGGGGTGGATGGATAGTCCAGATCAGATGAGTAGCGGTACTGTTGGTGATGATTGTGAGGAGGGGTCAAGGAGTAAGAGGTTCAAGGTTTCTTCTTCTGTAATGGTGCCTCCGACATTTGCTGGATCTCCATATAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

307

Amino Acids

33.34

Weight (kDa)

8.7

Isoelectric Point (pI)

60.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	37 - 86	6.3e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016819)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08080
malus_domestica	MD13G1252600.v1.1 MD16G1256800.v1.1
prunus_persica	Prupe.1G084800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0401791
rosa_laevigata	RLG00000009120
rosa_multiflora	Rmu_sc0001405.1_g000029
rosa_roxburghii	Rroxscaffold_5G00346350
rosa_rugosa	Rorug04G0032800
rosa_samantha	Rh4AG109200 Rh4BG103400 Rh4CG117400 Rh4DG101200
rosa_wichuraiana	Rw4G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	886
AccB7I	CCANNNNNTGG	1 cut(s)	781
AciI	CCGC	3 cut(s)	39, 382, 816
AclWI	GGATC	1 cut(s)	913
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	2 cut(s)	517, 703
AcyI	GRCGYC	1 cut(s)	379
AfaI	GTAC	5 cut(s)	180, 271, 606, 646, 820
AfiI	CCNNNNNNNGG	4 cut(s)	388, 632, 756, 781
AflIII	ACRYGT	1 cut(s)	175
AgeI	ACCGGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	418, 865
AhlI	ACTAGT	1 cut(s)	641
AjnI	CCWGG	1 cut(s)	727
AluBI	AGCT	5 cut(s)	16, 65, 242, 405, 717
AluI	AGCT	5 cut(s)	16, 65, 242, 405, 717
Alw21I	GWGCWC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	913
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	3 cut(s)	131, 291, 420
ApeKI	GCWGC	3 cut(s)	98, 218, 239
AsiGI	ACCGGT	1 cut(s)	286
AspS9I	GGNCC	3 cut(s)	8, 747, 772
AsuC2I	CCSGG	1 cut(s)	563
AsuHPI	GGTGA	3 cut(s)	269, 508, 839
AvaII	GGWCC	3 cut(s)	8, 747, 772
BaeGI	GKGCMC	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	886
BanII	GRGCYC	2 cut(s)	18, 250
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	110, 230, 251
BccI	CCATC	6 cut(s)	138, 368, 727, 737, 755, 784
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	729
BclI	TGATCA	2 cut(s)	466, 502
BcnI	CCSGG	1 cut(s)	563
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	7 cut(s)	243, 456, 612, 642, 648, 654, 684
BisI	GCNGC	4 cut(s)	99, 219, 240, 382
BlpI	GCTNAGC	1 cut(s)	401
BlsI	GCNGC	4 cut(s)	100, 220, 241, 383
BmcAI	AGTACT	1 cut(s)	646
Bme1390I	CCNGG	2 cut(s)	563, 729
Bme18I	GGWCC	3 cut(s)	8, 747, 772
BmgT120I	GGNCC	3 cut(s)	8, 747, 772
BmiI	GGNNCC	3 cut(s)	196, 748, 888
BmrFI	CCNGG	2 cut(s)	563, 729
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	2 cut(s)	456, 624
BmuI	ACTGGG	1 cut(s)	715
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	563
BsaAI	YACGTR	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	728
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 632, 756, 781
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	1 cut(s)	728
BseGI	GGATG	3 cut(s)	738, 766, 795
BseLI	CCNNNNNNNGG	4 cut(s)	388, 632, 756, 781
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	1 cut(s)	854
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	3 cut(s)	110, 230, 251
BshFI	GGCC	3 cut(s)	133, 293, 422
BshNI	GGYRCC	1 cut(s)	886
BshTI	ACCGGT	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	287, 563
BslI	CCNNNNNNNGG	4 cut(s)	388, 632, 756, 781
BsnI	GGCC	3 cut(s)	133, 293, 422
Bsp1286I	GDGCHC	3 cut(s)	18, 250, 627
Bsp143I	GATC	5 cut(s)	466, 502, 751, 802, 905
Bsp1720I	GCTNAGC	1 cut(s)	401
BspACI	CCGC	3 cut(s)	39, 382, 816
BspANI	GGCC	3 cut(s)	133, 293, 422
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	3 cut(s)	196, 748, 888
BspPI	GGATC	1 cut(s)	913
BspT107I	GGYRCC	1 cut(s)	886
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	710
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	728
BssMI	GATC	5 cut(s)	466, 502, 751, 802, 905
BssNI	GRCGYC	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	2 cut(s)	172, 207
BstACI	GRCGYC	1 cut(s)	379
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	3 cut(s)	12, 72, 401
BstF5I	GGATG	3 cut(s)	738, 766, 795
BstKTI	GATC	5 cut(s)	469, 505, 754, 805, 908
BstMBI	GATC	5 cut(s)	466, 502, 751, 802, 905
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 98, 224, 245
BstNI	CCWGG	1 cut(s)	729
BstSCI	CCNGG	2 cut(s)	561, 727
BstSLI	GKGCMC	1 cut(s)	627
BstV1I	GCAGC	3 cut(s)	110, 230, 251
BstX2I	RGATCY	1 cut(s)	905
BstYI	RGATCY	1 cut(s)	905
BsuRI	GGCC	3 cut(s)	133, 293, 422
BtsCI	GGATG	3 cut(s)	738, 766, 795
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	391, 657
Cac8I	GCNNGC	1 cut(s)	520
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	3 cut(s)	8, 747, 772
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	5 cut(s)	179, 270, 605, 645, 819
CspAI	ACCGGT	1 cut(s)	286
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	3 cut(s)	451, 629, 769
CviQI	GTAC	5 cut(s)	179, 270, 605, 645, 819
DdeI	CTNAG	3 cut(s)	12, 72, 401
DpnI	GATC	5 cut(s)	468, 504, 753, 804, 907
DpnII	GATC	5 cut(s)	466, 502, 751, 802, 905
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	172, 207
EarI	CTCTTC	2 cut(s)	172, 207
Ecl136II	GAGCTC	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	133
Eco24I	GRGCYC	2 cut(s)	18, 250
Eco47I	GGWCC	3 cut(s)	8, 747, 772
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	517, 703
EcoICRI	GAGCTC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	727
EcoT38I	GRGCYC	2 cut(s)	18, 250
FaeI	CATG	3 cut(s)	454, 632, 772
FalI	AAGNNNNNCTT	4 cut(s)	87, 119, 394, 426
FatI	CATG	3 cut(s)	450, 628, 768
FbaI	TGATCA	2 cut(s)	466, 502
Fnu4HI	GCNGC	4 cut(s)	99, 219, 240, 382
FokI	GGATG	3 cut(s)	745, 773, 802
FriOI	GRGCYC	2 cut(s)	18, 250
Fsp4HI	GCNGC	4 cut(s)	99, 219, 240, 382
FspBI	CTAG	7 cut(s)	243, 456, 612, 642, 648, 654, 684
GluI	GCNGC	4 cut(s)	99, 219, 240, 382
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	3 cut(s)	133, 293, 422
HapII	CCGG	2 cut(s)	287, 563
HgaI	GACGC	1 cut(s)	387
Hin1I	GRCGYC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	454, 632, 772
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	2 cut(s)	164, 737
HpaII	CCGG	2 cut(s)	287, 563
HphI	GGTGA	3 cut(s)	269, 508, 839
Hpy166II	GTNNAC	2 cut(s)	179, 568
Hpy188I	TCNGA	9 cut(s)	108, 194, 373, 536, 694, 742, 751, 807, 894
Hpy188III	TCNNGA	2 cut(s)	209, 800
Hpy8I	GTNNAC	2 cut(s)	179, 568
HpyAV	CCTTC	4 cut(s)	144, 369, 412, 675
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4IV	ACGT	2 cut(s)	175, 253
HpyCH4V	TGCA	2 cut(s)	281, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 98, 224, 245
HpyF3I	CTNAG	3 cut(s)	12, 72, 401
HpySE526I	ACGT	2 cut(s)	175, 253
Hsp92I	GRCGYC	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	454, 632, 772
Ksp22I	TGATCA	2 cut(s)	466, 502
Kzo9I	GATC	5 cut(s)	466, 502, 751, 802, 905
Lsp1109I	GCAGC	3 cut(s)	110, 230, 251
LweI	GCATC	2 cut(s)	456, 624
MaeI	CTAG	7 cut(s)	243, 456, 612, 642, 648, 654, 684
MaeII	ACGT	2 cut(s)	175, 253
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	5 cut(s)	468, 504, 753, 804, 907
MboI	GATC	5 cut(s)	466, 502, 751, 802, 905
MboII	GAAGA	6 cut(s)	159, 224, 402, 598, 864, 867
MflI	RGATCY	1 cut(s)	905
MhlI	GDGCHC	3 cut(s)	18, 250, 627
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	2 cut(s)	777, 919
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	2 cut(s)	158, 731
MmeI	TCCRAC	1 cut(s)	917
MnlI	CCTC	8 cut(s)	102, 208, 449, 493, 832, 835, 852, 900
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	2 cut(s)	353, 620
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	2 cut(s)	287, 563
MspR9I	CCNGG	2 cut(s)	563, 729
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	4 cut(s)	62, 98, 224, 245
NciI	CCSGG	1 cut(s)	563
NdeII	GATC	5 cut(s)	466, 502, 751, 802, 905
NlaIII	CATG	3 cut(s)	454, 632, 772
NlaIV	GGNNCC	3 cut(s)	196, 748, 888
PceI	AGGCCT	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 207
PflMI	CCANNNNNTGG	1 cut(s)	781
PinAI	ACCGGT	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	100, 220, 241, 383
PleI	GAGTC	2 cut(s)	158, 731
PpsI	GAGTC	2 cut(s)	158, 731
Ppu21I	YACGTR	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	3 cut(s)	196, 748, 888
PspPI	GGNCC	3 cut(s)	8, 747, 772
PspPPI	RGGWCCY	1 cut(s)	8
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	905
RsaI	GTAC	5 cut(s)	180, 271, 606, 646, 820
RsaNI	GTAC	5 cut(s)	179, 270, 605, 645, 819
RseI	CAYNNNNRTG	2 cut(s)	353, 620
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	4 cut(s)	99, 219, 240, 382
Sau3AI	GATC	5 cut(s)	466, 502, 751, 802, 905
Sau96I	GGNCC	3 cut(s)	8, 747, 772
ScaI	AGTACT	1 cut(s)	646
SchI	GAGTC	2 cut(s)	158, 731
ScrFI	CCNGG	2 cut(s)	563, 729
SduI	GDGCHC	3 cut(s)	18, 250, 627
SfaNI	GCATC	2 cut(s)	456, 624
SgrAI	CRCCGGYG	1 cut(s)	286
SinI	GGWCC	3 cut(s)	8, 747, 772
SmiMI	CAYNNNNRTG	2 cut(s)	353, 620
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
SpeI	ACTAGT	1 cut(s)	641
Sse9I	AATT	2 cut(s)	777, 919
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	3 cut(s)	39, 382, 816
SspMI	CTAG	7 cut(s)	243, 456, 612, 642, 648, 654, 684
SstI	GAGCTC	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	561, 727
TaaI	ACNGT	1 cut(s)	823
TaiI	ACGT	2 cut(s)	178, 256
TaqI	TCGA	3 cut(s)	80, 86, 579
TasI	AATT	2 cut(s)	777, 919
TatI	WGTACW	1 cut(s)	644
TauI	GCSGC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	2 cut(s)	391, 664
TseI	GCWGC	3 cut(s)	98, 218, 239
TspDTI	ATGAA	4 cut(s)	249, 599, 657, 757
TspRI	CASTG	2 cut(s)	391, 664
Van91I	CCANNNNNTGG	1 cut(s)	781
VpaK11BI	GGWCC	3 cut(s)	8, 747, 772
XspI	CTAG	7 cut(s)	243, 456, 612, 642, 648, 654, 684
ZrmI	AGTACT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.