Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0016819

Physical Location & Seq

Genomic Coordinates Reverse (-)

15377581 .. 15378836

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG101200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCAGGACCTGAGCTCACAAAAACCACTATCGCCCCCGCCACCACCACAGCCACCAAAGCTATGCCGAAGTCATCGACATCGAGAGCTAAAGCAGCACTTCGGAGGTTTGTTGGGGTTCGGCAAAGGCCTTCTGGGAGATGGGTAGCCGAAATCAAGGACTCTTCTCAACGTGTAAGGCTTTGGCTCGGAACCTACGACACTCCCGAAGAGGCAGCAAGAGCCTACGATGAAGCAGCTAGAGCCCTACGTGGTGAAAATGCCCGTACAAACTTTGCAACACCGGTGGCCAACCCTGACAATAAATCGAGCCTTTTGGCTAACTCTTGTCCTAATCCAAATGACACTTTTATGCCTTCTGGGTTGTCCGATGGACGCCACAGTGGGGGGCAAGGGCTAAGCTTTTCTTCTTTGAAGGCCAAGTTAAGCAAGAACCTCCAAAGCATCATGGCTAGGAGTAGTGATCATCATAACAAGTCCTCTAAAAGTAGGGTGAGTGATCACTTCACTTTTGCAAGCATATTCCACTTCAGAAAGTATCAGCAATACCAAAACAACCCAGTAAACCCTTTGTTCGATATGAAGAACATAGAGAAAGTGGTACAGCCTAGCATCATTGTGCCCCATACTGGAGAAACTAGTACTAGCACTAGCACTGACCCTTCATCTTGGGAAAGTTCTAGTATTTCGGATTGTAGCGACTGGGGTTACAGCTTCAGGCAACCCGGGATGGACTCTGATGGGTCCGATCTTGGGGATGGGTTCATGGACCAAATTATGGGGTGGATGGATAGTCCAGATCAGATGAGTAGCGGTACTGTTGGTGATGATTGTGAGGAGGGGTCAAGGAGTAAGAGGTTCAAGGTTTCTTCTTCTGTAATGGTGCCTTCAACATTTGCTGGATCTCCATATAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

306

Amino Acids

33.36

Weight (kDa)

8.69

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	36 - 85	6.3e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016819)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08080
malus_domestica	MD13G1252600.v1.1 MD16G1256800.v1.1
prunus_persica	Prupe.1G084800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0401791
rosa_laevigata	RLG00000009120
rosa_multiflora	Rmu_sc0001405.1_g000029
rosa_roxburghii	Rroxscaffold_5G00346350
rosa_rugosa	Rorug04G0032800
rosa_samantha	Rh4AG109200 Rh4BG103400 Rh4CG117400 Rh4DG101200
rosa_wichuraiana	Rw4G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	883
AccB7I	CCANNNNNTGG	1 cut(s)	778
AciI	CCGC	2 cut(s)	39, 813
AclWI	GGATC	1 cut(s)	910
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	2 cut(s)	514, 700
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	4 cut(s)	268, 603, 643, 817
AfiI	CCNNNNNNNGG	4 cut(s)	385, 629, 753, 778
AflIII	ACRYGT	1 cut(s)	172
AgeI	ACCGGT	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	415, 862, 891
AhlI	ACTAGT	1 cut(s)	638
AluBI	AGCT	6 cut(s)	16, 62, 89, 239, 402, 714
AluI	AGCT	6 cut(s)	16, 62, 89, 239, 402, 714
Alw21I	GWGCWC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	910
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	3 cut(s)	128, 288, 417
ApeKI	GCWGC	3 cut(s)	95, 215, 236
AsiGI	ACCGGT	1 cut(s)	283
AspS9I	GGNCC	3 cut(s)	8, 744, 769
AsuC2I	CCSGG	2 cut(s)	726, 727
AsuHPI	GGTGA	3 cut(s)	266, 505, 836
AvaI	CYCGRG	1 cut(s)	725
AvaII	GGWCC	3 cut(s)	8, 744, 769
BaeGI	GKGCMC	1 cut(s)	624
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	883
BanII	GRGCYC	2 cut(s)	18, 247
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	107, 227, 248
BccI	CCATC	6 cut(s)	135, 365, 724, 734, 752, 781
BclI	TGATCA	2 cut(s)	463, 499
BcnI	CCSGG	2 cut(s)	726, 727
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	7 cut(s)	240, 453, 609, 639, 645, 651, 681
BisI	GCNGC	3 cut(s)	96, 216, 237
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	3 cut(s)	97, 217, 238
BmcAI	AGTACT	1 cut(s)	643
Bme1390I	CCNGG	2 cut(s)	726, 727
Bme18I	GGWCC	3 cut(s)	8, 744, 769
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	3 cut(s)	8, 744, 769
BmiI	GGNNCC	3 cut(s)	193, 745, 885
BmrFI	CCNGG	2 cut(s)	726, 727
BmrI	ACTGGG	2 cut(s)	554, 712
BmsI	GCATC	2 cut(s)	453, 621
BmuI	ACTGGG	2 cut(s)	554, 712
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	726, 727
BsaAI	YACGTR	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	725
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	4 cut(s)	385, 629, 753, 778
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	3 cut(s)	560, 634, 707
BseDI	CCNNGG	1 cut(s)	725
BseGI	GGATG	3 cut(s)	735, 763, 792
BseLI	CCNNNNNNNGG	4 cut(s)	385, 629, 753, 778
BseNI	ACTGG	3 cut(s)	560, 634, 707
BseRI	GAGGAG	1 cut(s)	851
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	3 cut(s)	107, 227, 248
BshFI	GGCC	3 cut(s)	130, 290, 419
BshNI	GGYRCC	1 cut(s)	883
BshTI	ACCGGT	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	2 cut(s)	284, 726
BslI	CCNNNNNNNGG	4 cut(s)	385, 629, 753, 778
BsnI	GGCC	3 cut(s)	130, 290, 419
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	3 cut(s)	18, 247, 624
Bsp143I	GATC	5 cut(s)	463, 499, 748, 799, 902
Bsp1720I	GCTNAGC	1 cut(s)	398
BspACI	CCGC	2 cut(s)	39, 813
BspANI	GGCC	3 cut(s)	130, 290, 419
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	3 cut(s)	193, 745, 885
BspPI	GGATC	1 cut(s)	910
BspT107I	GGYRCC	1 cut(s)	883
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	3 cut(s)	560, 634, 707
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	5 cut(s)	463, 499, 748, 799, 902
BssNI	GRCGYC	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	383, 820
Bst6I	CTCTTC	2 cut(s)	169, 204
BstACI	GRCGYC	1 cut(s)	376
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	2 cut(s)	12, 398
BstF5I	GGATG	3 cut(s)	735, 763, 792
BstKTI	GATC	5 cut(s)	466, 502, 751, 802, 905
BstMBI	GATC	5 cut(s)	463, 499, 748, 799, 902
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 95, 221, 242
BstSCI	CCNGG	2 cut(s)	724, 725
BstSLI	GKGCMC	1 cut(s)	624
BstV1I	GCAGC	3 cut(s)	107, 227, 248
BstX2I	RGATCY	1 cut(s)	902
BstYI	RGATCY	1 cut(s)	902
BsuRI	GGCC	3 cut(s)	130, 290, 419
BtsCI	GGATG	3 cut(s)	735, 763, 792
BtsIMutI	CAGTG	2 cut(s)	388, 654
Cac8I	GCNNGC	1 cut(s)	517
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	3 cut(s)	8, 744, 769
Cfr9I	CCCGGG	1 cut(s)	725
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	4 cut(s)	267, 602, 642, 816
CspAI	ACCGGT	1 cut(s)	283
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviAII	CATG	2 cut(s)	448, 766
CviQI	GTAC	4 cut(s)	267, 602, 642, 816
DdeI	CTNAG	2 cut(s)	12, 398
DpnI	GATC	5 cut(s)	465, 501, 750, 801, 904
DpnII	GATC	5 cut(s)	463, 499, 748, 799, 902
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	169, 204
EarI	CTCTTC	2 cut(s)	169, 204
Ecl136II	GAGCTC	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	2 cut(s)	18, 247
Eco47I	GGWCC	3 cut(s)	8, 744, 769
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	514, 700
Eco88I	CYCGRG	1 cut(s)	725
EcoICRI	GAGCTC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	8
EcoT38I	GRGCYC	2 cut(s)	18, 247
FaeI	CATG	2 cut(s)	451, 769
FalI	AAGNNNNNCTT	4 cut(s)	84, 116, 391, 423
FatI	CATG	2 cut(s)	447, 765
FauI	CCCGC	1 cut(s)	46
FbaI	TGATCA	2 cut(s)	463, 499
Fnu4HI	GCNGC	3 cut(s)	96, 216, 237
FokI	GGATG	3 cut(s)	742, 770, 799
FriOI	GRGCYC	2 cut(s)	18, 247
Fsp4HI	GCNGC	3 cut(s)	96, 216, 237
FspBI	CTAG	7 cut(s)	240, 453, 609, 639, 645, 651, 681
GluI	GCNGC	3 cut(s)	96, 216, 237
GsuI	CTGGAG	1 cut(s)	651
HaeIII	GGCC	3 cut(s)	130, 290, 419
HapII	CCGG	2 cut(s)	284, 726
HgaI	GACGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	451, 769
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	2 cut(s)	161, 734
HpaII	CCGG	2 cut(s)	284, 726
HphI	GGTGA	3 cut(s)	266, 505, 836
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	8 cut(s)	105, 191, 370, 533, 691, 739, 748, 804
Hpy188III	TCNNGA	3 cut(s)	84, 206, 797
Hpy8I	GTNNAC	1 cut(s)	565
HpyAV	CCTTC	5 cut(s)	141, 366, 409, 672, 897
HpyCH4III	ACNGT	2 cut(s)	383, 820
HpyCH4IV	ACGT	2 cut(s)	172, 250
HpyCH4V	TGCA	2 cut(s)	278, 515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 95, 221, 242
HpyF3I	CTNAG	2 cut(s)	12, 398
HpySE526I	ACGT	2 cut(s)	172, 250
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	2 cut(s)	451, 769
Ksp22I	TGATCA	2 cut(s)	463, 499
Kzo9I	GATC	5 cut(s)	463, 499, 748, 799, 902
Lsp1109I	GCAGC	3 cut(s)	107, 227, 248
LweI	GCATC	2 cut(s)	453, 621
MaeI	CTAG	7 cut(s)	240, 453, 609, 639, 645, 651, 681
MaeII	ACGT	2 cut(s)	172, 250
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	5 cut(s)	465, 501, 750, 801, 904
MboI	GATC	5 cut(s)	463, 499, 748, 799, 902
MboII	GAAGA	6 cut(s)	156, 221, 399, 595, 861, 864
MflI	RGATCY	1 cut(s)	902
MhlI	GDGCHC	3 cut(s)	18, 247, 624
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	2 cut(s)	774, 916
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	155, 728
MnlI	CCTC	7 cut(s)	99, 205, 446, 490, 829, 832, 849
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	1 cut(s)	425
MslI	CAYNNNNRTG	2 cut(s)	350, 617
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	2 cut(s)	284, 726
MspR9I	CCNGG	2 cut(s)	726, 727
MwoI	GCNNNNNNNGC	4 cut(s)	59, 95, 221, 242
NciI	CCSGG	2 cut(s)	726, 727
NdeII	GATC	5 cut(s)	463, 499, 748, 799, 902
NlaIII	CATG	2 cut(s)	451, 769
NlaIV	GGNNCC	3 cut(s)	193, 745, 885
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 204
PflMI	CCANNNNNTGG	1 cut(s)	778
PinAI	ACCGGT	1 cut(s)	283
PkrI	GCNGC	3 cut(s)	97, 217, 238
PleI	GAGTC	2 cut(s)	155, 728
PpsI	GAGTC	2 cut(s)	155, 728
Ppu21I	YACGTR	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	8
PspN4I	GGNNCC	3 cut(s)	193, 745, 885
PspPI	GGNCC	3 cut(s)	8, 744, 769
PspPPI	RGGWCCY	1 cut(s)	8
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	902
RsaI	GTAC	4 cut(s)	268, 603, 643, 817
RsaNI	GTAC	4 cut(s)	267, 602, 642, 816
RseI	CAYNNNNRTG	2 cut(s)	350, 617
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	425
SatI	GCNGC	3 cut(s)	96, 216, 237
Sau3AI	GATC	5 cut(s)	463, 499, 748, 799, 902
Sau96I	GGNCC	3 cut(s)	8, 744, 769
ScaI	AGTACT	1 cut(s)	643
SchI	GAGTC	2 cut(s)	155, 728
ScrFI	CCNGG	2 cut(s)	726, 727
SduI	GDGCHC	3 cut(s)	18, 247, 624
SfaNI	GCATC	2 cut(s)	453, 621
SgrAI	CRCCGGYG	1 cut(s)	283
SinI	GGWCC	3 cut(s)	8, 744, 769
SmaI	CCCGGG	1 cut(s)	727
SmiMI	CAYNNNNRTG	2 cut(s)	350, 617
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	2 cut(s)	774, 916
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	2 cut(s)	39, 813
SspMI	CTAG	7 cut(s)	240, 453, 609, 639, 645, 651, 681
SstI	GAGCTC	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	2 cut(s)	724, 725
TaaI	ACNGT	2 cut(s)	383, 820
TaiI	ACGT	2 cut(s)	175, 253
TaqI	TCGA	4 cut(s)	77, 83, 308, 576
TasI	AATT	2 cut(s)	774, 916
TatI	WGTACW	1 cut(s)	641
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TscAI	CASTG	2 cut(s)	388, 661
TseI	GCWGC	3 cut(s)	95, 215, 236
TspDTI	ATGAA	4 cut(s)	246, 596, 654, 754
TspMI	CCCGGG	1 cut(s)	725
TspRI	CASTG	2 cut(s)	388, 661
Van91I	CCANNNNNTGG	1 cut(s)	778
VpaK11BI	GGWCC	3 cut(s)	8, 744, 769
XmaI	CCCGGG	1 cut(s)	725
XspI	CTAG	7 cut(s)	240, 453, 609, 639, 645, 651, 681
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.