Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016819

Physical Location & Seq

Genomic Coordinates Reverse (-)

6308151 .. 6309086

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G084800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCAGGACCTGAAGTACTCACAAAAACTACAACTGCAACCAGCCGCCCCACCAACAACAAAACCATGGTAACCAAATCCCCATCAACTACGAAAACCGCACTTCGAAGGTACGTTGGGGTTAGGCAAAGGCCGTCTGGAAGATGGGTAGCTGAGATCAAGGACTCATCTCAACGTGTGAGGCTATGGCTAGGCACTTATGACACACCTGAAGAAGCAGCAAGAGCTTATGATGAAGCTGCCAGAGCCCTACGTGGCGAAAACGCACGTACCAACTTTGTGTCTCCAGGGCCTGCTACGAACCCCAACTCAAGTCCATTGGTCTCTTCTGTTTCCAATGGGGGCTTTATGTCGGGGTCTGATGGCAGACATGGCGGCACAGGGGGGCTTAGCTTCTCTTCCTTAAAGGCCAAGTTAAGCAAGAACCTCCAAAGCATCATGGCTAGGAGTAGTGATCATAACAAGTCATCCAAGAGTAGGGTGAGTGATCACTTCACTTTTGCAAGTATTTTCCACTTCAGGAAATACCAATACCAAAACCCAATAAACCCTTCAATTGATATGAAGAATATCGAGAAAGTGGTGCAGCCTAGCATCATTGTGCCTCATAACGGAGAAGGTAGTACTAGTACTGAGCCTTCCTCTTGGGAAAGCTCTAGTATCTCAGACTGCAGTGCGGAGTGGGCTCACGGGTTCAGGCAAGCCGGGGTGGACTCAGAAGGGTCTGAAATTGGGGAAGGGAACATTATGGACCAACTTATGGGGTGGATAGATAGCCCAGATAATCAGATGGGCAGTAGGATTAGTGTTGGTGATGATGATAGTGAGGAGGGGTCAAGGAGTAAGAGGTTCAAGGTTTCTTCTTCAGTCATGGTGCCTCCAACATTTAGCACTGGATCTCCATTTAATAATATTAATGGAGAAACTTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

312

Amino Acids

33.63

Weight (kDa)

8.92

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016819)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08080
malus_domestica	MD13G1252600.v1.1 MD16G1256800.v1.1
prunus_persica	Prupe.1G084800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0401791
rosa_laevigata	RLG00000009120
rosa_multiflora	Rmu_sc0001405.1_g000029
rosa_roxburghii	Rroxscaffold_5G00346350
rosa_rugosa	Rorug04G0032800
rosa_samantha	Rh4AG109200 Rh4BG103400 Rh4CG117400 Rh4DG101200
rosa_wichuraiana	Rw4G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	874
AccB7I	CCANNNNNTGG	1 cut(s)	760
AciI	CCGC	4 cut(s)	46, 99, 375, 677
AclWI	GGATC	1 cut(s)	904
AcuI	CTGAAG	4 cut(s)	33, 231, 502, 849
AfaI	GTAC	5 cut(s)	18, 113, 271, 625, 631
AfiI	CCNNNNNNNGG	3 cut(s)	477, 611, 760
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	555, 853, 930
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	535, 567
AluBI	AGCT	5 cut(s)	152, 227, 239, 393, 654
AluI	AGCT	5 cut(s)	152, 227, 239, 393, 654
Alw26I	GTCTC	2 cut(s)	288, 328
AlwI	GGATC	1 cut(s)	904
AlwNI	CAGNNNCTG	2 cut(s)	11, 293
AoxI	GGCC	3 cut(s)	131, 290, 408
ApeKI	GCWGC	3 cut(s)	218, 239, 586
AseI	ATTAAT	1 cut(s)	915
AspS9I	GGNCC	3 cut(s)	8, 290, 751
AsuC2I	CCSGG	1 cut(s)	706
AsuHPI	GGTGA	2 cut(s)	493, 824
AsuII	TTCGAA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	8, 751
BaeI	ACNNNNGTAYC	2 cut(s)	253, 286
BanI	GGYRCC	1 cut(s)	874
BanII	GRGCYC	2 cut(s)	250, 688
BarI	GAAGNNNNNNTAC	2 cut(s)	622, 654
BbvI	GCAGC	3 cut(s)	226, 230, 598
BccI	CCATC	4 cut(s)	91, 138, 356, 784
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	2 cut(s)	454, 487
BcnI	CCSGG	1 cut(s)	706
BcoDI	GTCTC	2 cut(s)	288, 328
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	5 cut(s)	191, 444, 591, 627, 657
BfmI	CTRYAG	1 cut(s)	670
BisI	GCNGC	5 cut(s)	46, 219, 240, 376, 587
BlpI	GCTNAGC	1 cut(s)	389
BlsI	GCNGC	5 cut(s)	47, 220, 241, 377, 588
BmcAI	AGTACT	3 cut(s)	18, 625, 631
Bme1390I	CCNGG	2 cut(s)	288, 706
Bme18I	GGWCC	2 cut(s)	8, 751
BmgT120I	GGNCC	3 cut(s)	8, 290, 751
BmiI	GGNNCC	1 cut(s)	876
BmrFI	CCNGG	2 cut(s)	288, 706
BmsI	GCATC	2 cut(s)	444, 603
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
BpmI	CTGGAG	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	706
BsaAI	YACGTR	2 cut(s)	254, 269
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	3 cut(s)	66, 287, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	883, 913
Bsc4I	CCNNNNNNNGG	3 cut(s)	477, 611, 760
Bse1I	ACTGG	1 cut(s)	898
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	66, 287, 705
BseGI	GGATG	1 cut(s)	467
BseLI	CCNNNNNNNGG	3 cut(s)	477, 611, 760
BseMII	CTCAG	4 cut(s)	144, 624, 678, 729
BseNI	ACTGG	1 cut(s)	898
BseRI	GAGGAG	1 cut(s)	842
BseXI	GCAGC	3 cut(s)	226, 230, 598
BsgI	GTGCAG	1 cut(s)	605
BshFI	GGCC	3 cut(s)	133, 292, 410
BshNI	GGYRCC	1 cut(s)	874
BsiSI	CCGG	1 cut(s)	705
BslI	CCNNNNNNNGG	3 cut(s)	477, 611, 760
BsmAI	GTCTC	2 cut(s)	288, 328
BsnI	GGCC	3 cut(s)	133, 292, 410
Bso31I	GGTCTC	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	250, 688
Bsp143I	GATC	4 cut(s)	156, 454, 487, 896
Bsp1720I	GCTNAGC	1 cut(s)	389
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	4 cut(s)	46, 99, 375, 677
BspANI	GGCC	3 cut(s)	133, 292, 410
BspCNI	CTCAG	4 cut(s)	145, 625, 677, 728
BspLI	GGNNCC	1 cut(s)	876
BspMAI	CTGCAG	1 cut(s)	674
BspPI	GGATC	1 cut(s)	904
BspT104I	TTCGAA	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	874
BspTNI	GGTCTC	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	898
BssECI	CCNNGG	3 cut(s)	66, 287, 705
BssMI	GATC	4 cut(s)	156, 454, 487, 896
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	288
Bst6I	CTCTTC	2 cut(s)	331, 403
BstBAI	YACGTR	2 cut(s)	254, 269
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	294, 702
BstDEI	CTNAG	5 cut(s)	153, 389, 633, 664, 715
BstDSI	CCRYGG	1 cut(s)	66
BstEII	GGTNACC	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	467
BstKTI	GATC	4 cut(s)	159, 457, 490, 899
BstMAI	GTCTC	2 cut(s)	288, 328
BstMBI	GATC	4 cut(s)	156, 454, 487, 896
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 245, 372, 683
BstNI	CCWGG	1 cut(s)	288
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	286, 704
BstSFI	CTRYAG	1 cut(s)	670
BstV1I	GCAGC	3 cut(s)	226, 230, 598
BstX2I	RGATCY	1 cut(s)	896
BstYI	RGATCY	1 cut(s)	896
BsuRI	GGCC	3 cut(s)	133, 292, 410
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	467
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	2 cut(s)	679, 891
Cac8I	GCNNGC	2 cut(s)	294, 702
CaiI	CAGNNNCTG	2 cut(s)	11, 293
Cfr13I	GGNCC	3 cut(s)	8, 290, 751
Csp6I	GTAC	5 cut(s)	17, 112, 270, 624, 630
CviAII	CATG	4 cut(s)	67, 371, 439, 871
CviQI	GTAC	5 cut(s)	17, 112, 270, 624, 630
DdeI	CTNAG	5 cut(s)	153, 389, 633, 664, 715
DpnI	GATC	4 cut(s)	158, 456, 489, 898
DpnII	GATC	4 cut(s)	156, 454, 487, 896
Eam1104I	CTCTTC	2 cut(s)	331, 403
EarI	CTCTTC	2 cut(s)	331, 403
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	2 cut(s)	250, 688
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	8, 751
Eco57I	CTGAAG	4 cut(s)	33, 231, 502, 849
Eco91I	GGTNACC	1 cut(s)	70
EcoO109I	RGGNCCY	2 cut(s)	8, 290
EcoO65I	GGTNACC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	2 cut(s)	250, 688
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	70, 374, 442, 874
FatI	CATG	4 cut(s)	66, 370, 438, 870
FbaI	TGATCA	2 cut(s)	454, 487
Fnu4HI	GCNGC	5 cut(s)	46, 219, 240, 376, 587
FokI	GGATG	1 cut(s)	454
FriOI	GRGCYC	2 cut(s)	250, 688
Fsp4HI	GCNGC	5 cut(s)	46, 219, 240, 376, 587
FspBI	CTAG	5 cut(s)	191, 444, 591, 627, 657
GluI	GCNGC	5 cut(s)	46, 219, 240, 376, 587
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	133, 292, 410
HapII	CCGG	1 cut(s)	705
Hin1II	CATG	4 cut(s)	70, 374, 442, 874
HinfI	GANTC	2 cut(s)	164, 713
HpaII	CCGG	1 cut(s)	705
HphI	GGTGA	2 cut(s)	493, 824
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	5 cut(s)	361, 667, 718, 727, 789
Hpy188III	TCNNGA	3 cut(s)	138, 520, 574
Hpy8I	GTNNAC	1 cut(s)	712
HpyAV	CCTTC	6 cut(s)	102, 561, 611, 648, 713, 731
HpyCH4IV	ACGT	4 cut(s)	114, 175, 253, 268
HpyCH4V	TGCA	4 cut(s)	38, 503, 586, 672
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 245, 372, 683
HpyF3I	CTNAG	5 cut(s)	153, 389, 633, 664, 715
HpySE526I	ACGT	4 cut(s)	114, 175, 253, 268
Hsp92II	CATG	4 cut(s)	70, 374, 442, 874
Ksp22I	TGATCA	2 cut(s)	454, 487
Kzo9I	GATC	4 cut(s)	156, 454, 487, 896
Lsp1109I	GCAGC	3 cut(s)	226, 230, 598
LweI	GCATC	2 cut(s)	444, 603
MaeI	CTAG	5 cut(s)	191, 444, 591, 627, 657
MaeII	ACGT	4 cut(s)	114, 175, 253, 268
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	158, 456, 489, 898
MboI	GATC	4 cut(s)	156, 454, 487, 896
MboII	GAAGA	7 cut(s)	153, 224, 318, 390, 577, 852, 855
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	1 cut(s)	896
MhlI	GDGCHC	2 cut(s)	250, 688
MluCI	AATT	2 cut(s)	555, 729
MlyI	GAGTC	2 cut(s)	158, 707
MmeI	TCCRAC	1 cut(s)	905
MnlI	CCTC	8 cut(s)	174, 437, 615, 652, 820, 823, 840, 888
MseI	TTAA	4 cut(s)	404, 416, 906, 915
MslI	CAYNNNNRTG	1 cut(s)	599
MspI	CCGG	1 cut(s)	705
MspR9I	CCNGG	2 cut(s)	288, 706
MunI	CAATTG	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	4 cut(s)	224, 245, 372, 683
NciI	CCSGG	1 cut(s)	706
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	4 cut(s)	156, 454, 487, 896
NlaIII	CATG	4 cut(s)	70, 374, 442, 874
NlaIV	GGNNCC	1 cut(s)	876
NspV	TTCGAA	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	5 cut(s)	47, 220, 241, 377, 588
PleI	GAGTC	2 cut(s)	158, 707
PpsI	GAGTC	2 cut(s)	158, 707
Ppu21I	YACGTR	2 cut(s)	254, 269
PpuMI	RGGWCCY	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	915
Psp5II	RGGWCCY	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	876
PspPI	GGNCC	3 cut(s)	8, 290, 751
PspPPI	RGGWCCY	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	674
PstNI	CAGNNNCTG	2 cut(s)	11, 293
PsuI	RGATCY	1 cut(s)	896
RsaI	GTAC	5 cut(s)	18, 113, 271, 625, 631
RsaNI	GTAC	5 cut(s)	17, 112, 270, 624, 630
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	4 cut(s)	404, 416, 906, 915
SatI	GCNGC	5 cut(s)	46, 219, 240, 376, 587
Sau3AI	GATC	4 cut(s)	156, 454, 487, 896
Sau96I	GGNCC	3 cut(s)	8, 290, 751
ScaI	AGTACT	3 cut(s)	18, 625, 631
SchI	GAGTC	2 cut(s)	158, 707
ScrFI	CCNGG	2 cut(s)	288, 706
SduI	GDGCHC	2 cut(s)	250, 688
SfaNI	GCATC	2 cut(s)	444, 603
SfcI	CTRYAG	1 cut(s)	670
SfuI	TTCGAA	1 cut(s)	106
SinI	GGWCC	2 cut(s)	8, 751
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	2 cut(s)	555, 729
SsiI	CCGC	4 cut(s)	46, 99, 375, 677
SspI	AATATT	1 cut(s)	913
SspMI	CTAG	5 cut(s)	191, 444, 591, 627, 657
StyD4I	CCNGG	2 cut(s)	286, 704
StyI	CCWWGG	1 cut(s)	66
TaiI	ACGT	4 cut(s)	117, 178, 256, 271
TaqI	TCGA	2 cut(s)	106, 573
TasI	AATT	2 cut(s)	555, 729
TatI	WGTACW	3 cut(s)	16, 623, 629
TauI	GCSGC	2 cut(s)	48, 378
Tru1I	TTAA	4 cut(s)	404, 416, 906, 915
Tru9I	TTAA	4 cut(s)	404, 416, 906, 915
TscAI	CASTG	2 cut(s)	679, 898
TseI	GCWGC	3 cut(s)	218, 239, 586
TspDTI	ATGAA	2 cut(s)	249, 578
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	2 cut(s)	679, 898
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	2 cut(s)	8, 751
VspI	ATTAAT	1 cut(s)	915
XspI	CTAG	5 cut(s)	191, 444, 591, 627, 657
ZrmI	AGTACT	3 cut(s)	18, 625, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.