Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012479

Physical Location & Seq

Genomic Coordinates Forward (+)

10361866 .. 10374444

Gene Structure 12579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09130.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGCTCCGCCTCACCTCTCTCCTCCTCCGCCGCAGCCGCCATCACTGCCACGTCACCAAACCCTTCACCACCACCACCGCCAACGCTAATCCTCCGCCTCTGAGCGTCCCTCTGTCTCACCCTATCTACCTCATATGGTCCTCCAACACCTCCCTCGGCAAAACCCTAGTCTCCACCGGCCTCGCCGCCTCCTCTCTCCTTCGCCGCCGCCGCTCCTCCTTCCTCTACCTCAAGCCCGTCCAGACCGGCTTCCCCGCCGACTCCGACTCCCGCTTCGTCTTCTCCAAACTCACCTCCCTCGCCCTCTGCCGCCGCCTCTCCCCTCTCCTCGCCTCCAACCACGTCCTCAAGGCCTCCGCCTCCGCCGCACGCTCCCTATTAGCCCCAGGAGCTCCTCAAATTTTCGATAATGGCATGTGCGATTTGGATTGGTTTGAGGAGAGGAGGATTTCCGGGGACGATTCCGGAGATGATGAGCTTTCAAAGCTTGTTTGTAAGACAATGTACGCTTGGGGAGACGCCGTTTCGCCTCATTTGGCTGCGGAGAGGGAGAATGGGGCTGTTGAGGATTCAGCTTTGCTCGAAATGGTGCAGGGGTGTTTGGAAATTGGGGCTGGAAAGGAGAAGATGGACCATTTCTGTGTGGTTGAGACGGCTGGCGGGGTCGCAAGTCCCGGGCCTTCTGGGTCACTTCAATGTGACTTGTTCAGGCCTTTTCGTTTGCCTGCAATTCTTGTTGGAGATGGGCGGTTAGGTGGGATTTCCGGAACCATTTCAGCTTATGAAACTTTGAAACTTCGGGGTTATGATGTTGTCGCGCTTGTTCTTGAGGATCAAGGCCTTGTAAATGAGGTCCCTTTAGCATCATATCTTAGGAACAGTGTTCCAGTGCTTGTTCTTCCACCTGTTCCACAAGACTTGTCAGATGACCTTATGGAGTGGTACGATGATGCTCGTAATGTTTTTGATTCGCTCATGGAGATAATGCTATCAGCTTACTCTGAGAGAATCAAGAGATTGCATGACATGCCAAAGAGGGCAGTAAATGTTTTTTGGTGGCCATTTACTCAGCACACATTGGTACGGGAAGGAAATGTTACAGTGATTGATTCACGCTGTGGTGAGAACTTTGCAGTCTTCAAGAATAATGATGCCATAACTGAACAATTTGACGCATGTGCAAGTTGGTGGACACAAGGACCTGATGCTACTTTACAGACTGAGCTTGCGAGGGATATCGGTTATGCAGCTGCAAGATTTGGGCATGTGATGTTTCCTGAGAATGTTTATGAGCCAGCCTTAGAATGTGCAGAACTTTTGCTTGAAGGTGTTGGAAAAGATTGGGCGTCTAGAACGTACTTTTCGGACAATGGATCTACAGCAATTGAGATTGCATTGAAGATGGCATTCCGTAAATTCTCTCATGATCACGGACTTCTCTTGGAGTCTTTGAAGGACAACTCAACTGAGAGATGTCCTGAGCTTGTGGTCCTAGCTCTTAATGGATCTTATCATGGTGATACTTTGGGTGCTATGGAAGCACAAGCACCGTCATGTTATACCGGCTTCCTACAACAACCATGGTATAAAGGAAGAGGTTTTTTTTTCGATCCTCCTACAGTCTTTTTGAGCAAGAATATGTGGAACCTTTCCCTACCTGTGGGATTGCATTCTCCAGATTTAAATGCTAAAAATCTGACCTTCTGTTCCCGTGATGATATACTAAACAAGAGCAGGGACAAGTCAGATCTTTCTGAAATTTATTCATCATTTGTATCACATCAGTTATCGAAGTTTCCTGAATCGAGAGGGCTAATTGGTGCATTGATTATTGAACCAGTTATACAAGGTGCTGGAGGGATGCATATGGTTGATCCACTTTTCCAACGGATTCTTGTGAATGAGTGCCGGAATAAAAACATTCCCGTTATCTTTGATGAGGTCTTCACCGGTTTCTGGCGCCTAGGAACAGAGTCTGCTGCCGAACTTCTGTGCTGTTTACCAGATATAGCCTGTTTTGGGAAGCTGATGACAGGTGGTACTGTACCCTTGTCTGCTACATTGGCTACGGATGCTGTATTTGACTCATTTATTGGAGACTCAAAGCTGAAGGCCCTTTTGCATGGACACTCATATTCTGCACATGCTATCGGGTGCACAGCTGCTGCTAAATCCATCAGATGGTTTAAAGATTCTGATAGAAATCCTAATATCAGTTCCAAAGGAAGCTTGCTCACAGAGCTATGGGATAACAAACTAGTGTATCAAATATCATCACATCCTGCAATTAAAAGAGTGGTTGTGTTGGGAACACTTTGTGCTATAGAACTCCAAGCAGAAGGCTGCAATGCTGGGTACGGGTCACTATACGCAACTTCTCTTTTGAAGCAGCTCCGAGAAGACGGTGTTTACATGAGACCTCTGGGAAATGTCATATATCTCATGTGCGGACCCTGCACATCTCCTAAGATCTGCAACCAGGCAATCAGAAAAGTTTACATAAGACTTGAAGAATTTAGCCAATCTCAACTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004015 GO:0004141 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006768 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009102 GO:0009108 GO:0009110 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0016874 GO:0016879 GO:0016882 GO:0017144 GO:0018130 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

AAA_26 Aminotran_3

Protein Analysis

846

Amino Acids

93.03

Weight (kDa)

5.96

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_26	PF13500	172 - 278	1.3e-08	AAA domain
Aminotran_3	PF00202	416 - 517	1e-08	Aminotransferase class-III
Aminotran_3	PF00202	603 - 780	3e-29	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57590
fragaria_vesca	FvH4_4g09130 FvH4_4g09130
malus_domestica	MD13G1267300.v1.1
prunus_persica	Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1
pyrus_communis	pycom13g22810
rosa_chinensis	RchiOBHm_Chr4g0403051
rosa_laevigata	RLG00000009028
rosa_multiflora	Rmu_co8501967.1_g000001 Rmu_sc0001023.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347740
rosa_rugosa	Rorug04G0040400
rosa_samantha	Rh4AG117700 Rh4BG110200 Rh4CG124500 Rh4DG109600
rosa_wichuraiana	Rw4G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1959
AccB7I	CCANNNNNTGG	1 cut(s)	2181
AccBSI	CCGCTC	1 cut(s)	213
AccII	CGCG	1 cut(s)	818
AccIII	TCCGGA	2 cut(s)	464, 764
AclWI	GGATC	5 cut(s)	840, 1381, 1513, 1604, 1868
AcoI	YGGCCR	1 cut(s)	1058
AcsI	RAATTY	4 cut(s)	399, 1415, 1758, 2513
AcuI	CTGAAG	1 cut(s)	2129
AcyI	GRCGYC	3 cut(s)	519, 1346, 1960
AdeI	CACNNNGTG	2 cut(s)	1118, 2318
AfaI	GTAC	7 cut(s)	506, 944, 1083, 1358, 2041, 2046, 2357
AfiI	CCNNNNNNNGG	4 cut(s)	1660, 1956, 2019, 2181
AgeI	ACCGGT	1 cut(s)	1949
AhlI	ACTAGT	1 cut(s)	2257
AjiI	CACGTC	2 cut(s)	52, 343
AjnI	CCWGG	2 cut(s)	385, 2478
Alw21I	GWGCWC	2 cut(s)	394, 2159
Alw26I	GTCTC	6 cut(s)	120, 175, 510, 644, 2091, 2410
Alw44I	GTGCAC	1 cut(s)	2155
AlwI	GGATC	5 cut(s)	840, 1381, 1513, 1604, 1868
AlwNI	CAGNNNCTG	2 cut(s)	1976, 2165
Ama87I	CYCGRG	1 cut(s)	674
Aor13HI	TCCGGA	2 cut(s)	464, 764
AoxI	GGCC	7 cut(s)	178, 351, 677, 710, 838, 1058, 2112
ApaLI	GTGCAC	1 cut(s)	2155
ApeKI	GCWGC	9 cut(s)	33, 539, 1247, 1250, 1979, 2162, 2165, 2343, 2389
ApoI	RAATTY	4 cut(s)	399, 1415, 1758, 2513
ArsI	GACNNNNNNTTYG	4 cut(s)	153, 185, 257, 289
AsiGI	ACCGGT	1 cut(s)	1949
Asp700I	GAANNNNTTC	1 cut(s)	772
AspA2I	CCTAGG	1 cut(s)	1963
AspLEI	GCGC	2 cut(s)	820, 1962
AspS9I	GGNCC	8 cut(s)	138, 631, 677, 853, 1199, 1489, 2113, 2450
AsuC2I	CCSGG	3 cut(s)	454, 675, 676
AsuHPI	GGTGA	8 cut(s)	4, 46, 58, 110, 283, 1133, 1529, 1939
AvaI	CYCGRG	1 cut(s)	674
AvaII	GGWCC	6 cut(s)	138, 631, 853, 1199, 1489, 2450
AvrII	CCTAGG	1 cut(s)	1963
BaeGI	GKGCMC	1 cut(s)	2159
BaeI	ACNNNNGTAYC	2 cut(s)	2246, 2279
BalI	TGGCCA	1 cut(s)	1060
BanI	GGYRCC	1 cut(s)	1959
BanII	GRGCYC	1 cut(s)	394
BbsI	GAAGAC	4 cut(s)	271, 1129, 1936, 2406
Bbv12I	GWGCWC	2 cut(s)	394, 2159
BbvI	GCAGC	9 cut(s)	45, 526, 1237, 1259, 1966, 2149, 2152, 2330, 2401
BccI	CCATC	6 cut(s)	48, 622, 737, 1396, 2175, 2183
BceAI	ACGGC	2 cut(s)	506, 669
BciT130I	CCWGG	2 cut(s)	387, 2480
BclI	TGATCA	1 cut(s)	1426
BcnI	CCSGG	3 cut(s)	454, 675, 676
BcoDI	GTCTC	6 cut(s)	120, 175, 510, 644, 2091, 2410
BcuI	ACTAGT	1 cut(s)	2257
BfaI	CTAG	5 cut(s)	167, 1350, 1493, 1964, 2258
BfmI	CTRYAG	3 cut(s)	1377, 1617, 2322
BfoI	RGCGCY	1 cut(s)	1963
BglII	AGATCT	2 cut(s)	1747, 2469
BlnI	CCTAGG	1 cut(s)	1963
Bme1390I	CCNGG	5 cut(s)	387, 454, 675, 676, 2480
Bme18I	GGWCC	6 cut(s)	138, 631, 853, 1199, 1489, 2450
BmeT110I	CYCGRG	1 cut(s)	674
BmgBI	CACGTC	2 cut(s)	52, 343
BmgT120I	GGNCC	8 cut(s)	138, 631, 677, 853, 1199, 1489, 2113, 2450
BmiI	GGNNCC	5 cut(s)	769, 855, 1646, 1961, 2452
BmrFI	CCNGG	5 cut(s)	387, 454, 675, 676, 2480
BmsI	GCATC	6 cut(s)	872, 940, 1141, 1195, 1851, 2062
BpiI	GAAGAC	4 cut(s)	271, 1129, 1936, 2406
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpmI	CTGGAG	2 cut(s)	1659, 1875
Bpu10I	CCTNAGC	1 cut(s)	1479
BpuEI	CTTGAG	3 cut(s)	215, 332, 848
BpuMI	CCSGG	3 cut(s)	454, 675, 676
BsaBI	GATNNNNATC	1 cut(s)	2202
BsaHI	GRCGYC	3 cut(s)	519, 1346, 1960
BsaI	GGTCTC	1 cut(s)	2410
BsaJI	CCNNGG	6 cut(s)	154, 385, 453, 674, 1580, 1963
BsaWI	WCCGGW	3 cut(s)	464, 764, 1949
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 507, 537
Bsc4I	CCNNNNNNNGG	4 cut(s)	1660, 1956, 2019, 2181
Bse118I	RCCGGY	4 cut(s)	176, 245, 1562, 1949
Bse1I	ACTGG	2 cut(s)	887, 1838
Bse3DI	GCAATG	1 cut(s)	2353
Bse8I	GATNNNNATC	1 cut(s)	2202
BseAI	TCCGGA	2 cut(s)	464, 764
BseBI	CCWGG	2 cut(s)	387, 2480
BseDI	CCNNGG	6 cut(s)	154, 385, 453, 674, 1580, 1963
BseGI	GGATG	3 cut(s)	1866, 2077, 2278
BseJI	GATNNNNATC	1 cut(s)	2202
BseLI	CCNNNNNNNGG	4 cut(s)	1660, 1956, 2019, 2181
BseMI	GCAATG	1 cut(s)	2353
BseMII	CTCAG	7 cut(s)	92, 993, 1082, 1212, 1269, 1458, 1470
BseNI	ACTGG	2 cut(s)	887, 1838
BseRI	GAGGAG	8 cut(s)	11, 14, 181, 205, 317, 384, 452, 457
BseSI	GKGCMC	1 cut(s)	2159
BseXI	GCAGC	9 cut(s)	45, 526, 1237, 1259, 1966, 2149, 2152, 2330, 2401
BseYI	CCCAGC	1 cut(s)	2351
BsgI	GTGCAG	4 cut(s)	611, 1329, 2124, 2440
Bsh1236I	CGCG	1 cut(s)	818
BshFI	GGCC	7 cut(s)	180, 353, 679, 712, 840, 1060, 2114
BshNI	GGYRCC	1 cut(s)	1959
BshTI	ACCGGT	1 cut(s)	1949
BsiHKAI	GWGCWC	2 cut(s)	394, 2159
BsiHKCI	CYCGRG	1 cut(s)	674
BsiSI	CCGG	9 cut(s)	177, 246, 453, 465, 675, 765, 1563, 1909, 1950
BslFI	GGGAC	5 cut(s)	92, 470, 657, 839, 1751
BslI	CCNNNNNNNGG	4 cut(s)	1660, 1956, 2019, 2181
BsmAI	GTCTC	6 cut(s)	120, 175, 510, 644, 2091, 2410
BsmBI	CGTCTC	2 cut(s)	510, 644
BsmFI	GGGAC	5 cut(s)	92, 470, 657, 839, 1751
BsmI	GAATGC	2 cut(s)	1406, 1669
BsnI	GGCC	7 cut(s)	180, 353, 679, 712, 840, 1060, 2114
Bso31I	GGTCTC	1 cut(s)	2410
BsoBI	CYCGRG	1 cut(s)	674
Bsp1286I	GDGCHC	2 cut(s)	394, 2159
Bsp13I	TCCGGA	2 cut(s)	464, 764
Bsp143I	GATC	8 cut(s)	832, 1373, 1426, 1505, 1609, 1747, 1873, 2469
Bsp19I	CCATGG	1 cut(s)	1580
BspANI	GGCC	7 cut(s)	180, 353, 679, 712, 840, 1060, 2114
BspCNI	CTCAG	7 cut(s)	93, 994, 1081, 1213, 1270, 1459, 1471
BspEI	TCCGGA	2 cut(s)	464, 764
BspFNI	CGCG	1 cut(s)	818
BspHI	TCATGA	1 cut(s)	1423
BspLI	GGNNCC	5 cut(s)	769, 855, 1646, 1961, 2452
BspPI	GGATC	5 cut(s)	840, 1381, 1513, 1604, 1868
BspT107I	GGYRCC	1 cut(s)	1959
BspTNI	GGTCTC	1 cut(s)	2410
BsrBI	CCGCTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	2353
BsrFI	RCCGGY	4 cut(s)	176, 245, 1562, 1949
BsrI	ACTGG	2 cut(s)	887, 1838
BssAI	RCCGGY	4 cut(s)	176, 245, 1562, 1949
BssECI	CCNNGG	6 cut(s)	154, 385, 453, 674, 1580, 1963
BssMI	GATC	8 cut(s)	832, 1373, 1426, 1505, 1609, 1747, 1873, 2469
BssNI	GRCGYC	3 cut(s)	519, 1346, 1960
BssT1I	CCWWGG	2 cut(s)	1580, 1963
Bst2UI	CCWGG	2 cut(s)	387, 2480
Bst4CI	ACNGT	6 cut(s)	881, 1102, 1551, 1621, 2044, 2405
Bst6I	CTCTTC	1 cut(s)	1588
BstACI	GRCGYC	3 cut(s)	519, 1346, 1960
BstAPI	GCANNNNNTGC	1 cut(s)	1027
BstC8I	GCNNGC	6 cut(s)	370, 658, 726, 1227, 1296, 2231
BstDSI	CCRYGG	1 cut(s)	1580
BstF5I	GGATG	3 cut(s)	1866, 2077, 2278
BstFNI	CGCG	1 cut(s)	818
BstH2I	RGCGCY	1 cut(s)	1963
BstHHI	GCGC	2 cut(s)	820, 1962
BstKTI	GATC	8 cut(s)	835, 1376, 1429, 1508, 1612, 1750, 1876, 2472
BstMAI	GTCTC	6 cut(s)	120, 175, 510, 644, 2091, 2410
BstMBI	GATC	8 cut(s)	832, 1373, 1426, 1505, 1609, 1747, 1873, 2469
BstNI	CCWGG	2 cut(s)	387, 2480
BstNSI	RCATGY	5 cut(s)	418, 1030, 1179, 1268, 2147
BstSCI	CCNGG	5 cut(s)	385, 452, 673, 674, 2478
BstSFI	CTRYAG	3 cut(s)	1377, 1617, 2322
BstSLI	GKGCMC	1 cut(s)	2159
BstUI	CGCG	1 cut(s)	818
BstV1I	GCAGC	9 cut(s)	45, 526, 1237, 1259, 1966, 2149, 2152, 2330, 2401
BstV2I	GAAGAC	4 cut(s)	271, 1129, 1936, 2406
BstX2I	RGATCY	4 cut(s)	1373, 1505, 1747, 2469
BstYI	RGATCY	4 cut(s)	1373, 1505, 1747, 2469
BsuRI	GGCC	7 cut(s)	180, 353, 679, 712, 840, 1060, 2114
BtgI	CCRYGG	1 cut(s)	1580
BtrI	CACGTC	2 cut(s)	52, 343
BtsCI	GGATG	3 cut(s)	1866, 2077, 2278
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	4 cut(s)	43, 886, 894, 1107
Cac8I	GCNNGC	6 cut(s)	370, 658, 726, 1227, 1296, 2231
CaiI	CAGNNNCTG	2 cut(s)	1976, 2165
CciI	TCATGA	1 cut(s)	1423
CfoI	GCGC	2 cut(s)	820, 1962
Cfr10I	RCCGGY	4 cut(s)	176, 245, 1562, 1949
Cfr13I	GGNCC	8 cut(s)	138, 631, 677, 853, 1199, 1489, 2113, 2450
Cfr9I	CCCGGG	1 cut(s)	674
CseI	GACGC	4 cut(s)	94, 527, 1181, 1335
Csp6I	GTAC	7 cut(s)	505, 943, 1082, 1357, 2040, 2045, 2356
CspAI	ACCGGT	1 cut(s)	1949
CspCI	CAANNNNNGTGG	2 cut(s)	900, 935
CviQI	GTAC	7 cut(s)	505, 943, 1082, 1357, 2040, 2045, 2356
DinI	GGCGCC	1 cut(s)	1961
DpnI	GATC	8 cut(s)	834, 1375, 1428, 1507, 1611, 1749, 1875, 2471
DpnII	GATC	8 cut(s)	832, 1373, 1426, 1505, 1609, 1747, 1873, 2469
DraI	TTTAAA	2 cut(s)	1683, 2188
DraIII	CACNNNGTG	2 cut(s)	1118, 2318
EaeI	YGGCCR	1 cut(s)	1058
Eam1104I	CTCTTC	1 cut(s)	1588
EarI	CTCTTC	1 cut(s)	1588
EciI	GGCGGA	4 cut(s)	17, 84, 346, 352
Ecl136II	GAGCTC	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	1580, 1963
Eco147I	AGGCCT	3 cut(s)	353, 712, 840
Eco24I	GRGCYC	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	2410
Eco32I	GATATC	1 cut(s)	1237
Eco47I	GGWCC	6 cut(s)	138, 631, 853, 1199, 1489, 2450
Eco53kI	GAGCTC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	2129
Eco88I	CYCGRG	1 cut(s)	674
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	3 cut(s)	853, 1199, 2113
EcoRII	CCWGG	2 cut(s)	385, 2478
EcoRV	GATATC	1 cut(s)	1237
EcoT14I	CCWWGG	2 cut(s)	1580, 1963
EcoT22I	ATGCAT	1 cut(s)	1866
EcoT38I	GRGCYC	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	1961
EheI	GGCGCC	1 cut(s)	1961
ErhI	CCWWGG	2 cut(s)	1580, 1963
Esp3I	CGTCTC	2 cut(s)	510, 644
FaqI	GGGAC	5 cut(s)	92, 470, 657, 839, 1751
FauI	CCCGC	3 cut(s)	262, 278, 653
FauNDI	CATATG	2 cut(s)	134, 1866
FbaI	TGATCA	1 cut(s)	1426
FokI	GGATG	3 cut(s)	1873, 2084, 2265
FriOI	GRGCYC	1 cut(s)	394
FspBI	CTAG	5 cut(s)	167, 1350, 1493, 1964, 2258
GlaI	GCGC	2 cut(s)	819, 1961
GsaI	CCCAGC	1 cut(s)	2355
GsuI	CTGGAG	2 cut(s)	1659, 1875
HaeII	RGCGCY	1 cut(s)	1963
HaeIII	GGCC	7 cut(s)	180, 353, 679, 712, 840, 1060, 2114
HapII	CCGG	9 cut(s)	177, 246, 453, 465, 675, 765, 1563, 1909, 1950
HgaI	GACGC	4 cut(s)	94, 527, 1181, 1335
HhaI	GCGC	2 cut(s)	820, 1962
Hin1I	GRCGYC	3 cut(s)	519, 1346, 1960
Hin6I	GCGC	2 cut(s)	818, 1960
HinP1I	GCGC	2 cut(s)	818, 1960
HindIII	AAGCTT	2 cut(s)	485, 2227
HpaII	CCGG	9 cut(s)	177, 246, 453, 465, 675, 765, 1563, 1909, 1950
HphI	GGTGA	8 cut(s)	4, 46, 58, 110, 283, 1133, 1529, 1939
Hpy166II	GTNNAC	5 cut(s)	1191, 2000, 2157, 2410, 2497
Hpy8I	GTNNAC	5 cut(s)	1191, 2000, 2157, 2410, 2497
HpyCH4III	ACNGT	6 cut(s)	881, 1102, 1551, 1621, 2044, 2405
HpyCH4IV	ACGT	3 cut(s)	51, 342, 1355
HpySE526I	ACGT	3 cut(s)	51, 342, 1355
Hsp92I	GRCGYC	3 cut(s)	519, 1346, 1960
HspAI	GCGC	2 cut(s)	818, 1960
KasI	GGCGCC	1 cut(s)	1959
Kpn2I	TCCGGA	2 cut(s)	464, 764
Ksp22I	TGATCA	1 cut(s)	1426
Kzo9I	GATC	8 cut(s)	832, 1373, 1426, 1505, 1609, 1747, 1873, 2469
LmnI	GCTCC	6 cut(s)	9, 218, 377, 389, 397, 2397
Lsp1109I	GCAGC	9 cut(s)	45, 526, 1237, 1259, 1966, 2149, 2152, 2330, 2401
LweI	GCATC	6 cut(s)	872, 940, 1141, 1195, 1851, 2062
MaeI	CTAG	5 cut(s)	167, 1350, 1493, 1964, 2258
MaeII	ACGT	3 cut(s)	51, 342, 1355
MaeIII	GTNAC	5 cut(s)	52, 687, 698, 1096, 2361
MalI	GATC	8 cut(s)	834, 1375, 1428, 1507, 1611, 1749, 1875, 2471
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	8 cut(s)	832, 1373, 1426, 1505, 1609, 1747, 1873, 2469
MboII	GAAGA	9 cut(s)	271, 637, 890, 1129, 1411, 1605, 1936, 2411, 2522
MfeI	CAATTG	1 cut(s)	1383
MflI	RGATCY	4 cut(s)	1373, 1505, 1747, 2469
MhlI	GDGCHC	2 cut(s)	394, 2159
MlsI	TGGCCA	1 cut(s)	1060
MluNI	TGGCCA	1 cut(s)	1060
Mly113I	GGCGCC	1 cut(s)	1960
MlyI	GAGTC	6 cut(s)	254, 260, 1454, 1982, 2078, 2093
MmeI	TCCRAC	6 cut(s)	168, 288, 360, 718, 1312, 1909
Mox20I	TGGCCA	1 cut(s)	1060
Mph1103I	ATGCAT	1 cut(s)	1866
MroI	TCCGGA	2 cut(s)	464, 764
MroXI	GAANNNNTTC	1 cut(s)	772
MscI	TGGCCA	1 cut(s)	1060
MseI	TTAA	4 cut(s)	1500, 1682, 2187, 2289
MslI	CAYNNNNRTG	3 cut(s)	639, 694, 1552
Msp20I	TGGCCA	1 cut(s)	1060
MspA1I	CMGCKG	2 cut(s)	1250, 2162
MspI	CCGG	9 cut(s)	177, 246, 453, 465, 675, 765, 1563, 1909, 1950
MspR9I	CCNGG	5 cut(s)	387, 454, 675, 676, 2480
MunI	CAATTG	1 cut(s)	1383
Mva1269I	GAATGC	2 cut(s)	1406, 1669
MvaI	CCWGG	2 cut(s)	387, 2480
MvnI	CGCG	1 cut(s)	818
NarI	GGCGCC	1 cut(s)	1960
NciI	CCSGG	3 cut(s)	454, 675, 676
NcoI	CCATGG	1 cut(s)	1580
NdeI	CATATG	2 cut(s)	134, 1866
NdeII	GATC	8 cut(s)	832, 1373, 1426, 1505, 1609, 1747, 1873, 2469
NlaIV	GGNNCC	5 cut(s)	769, 855, 1646, 1961, 2452
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	4 cut(s)	52, 687, 698, 2361
NsiI	ATGCAT	1 cut(s)	1866
NspI	RCATGY	5 cut(s)	418, 1030, 1179, 1268, 2147
PagI	TCATGA	1 cut(s)	1423
PceI	AGGCCT	3 cut(s)	353, 712, 840
PctI	GAATGC	2 cut(s)	1406, 1669
PdmI	GAANNNNTTC	1 cut(s)	772
PfeI	GAWTC	8 cut(s)	461, 569, 968, 1008, 1109, 1802, 1891, 2192
PflMI	CCANNNNNTGG	1 cut(s)	2181
PinAI	ACCGGT	1 cut(s)	1949
PleI	GAGTC	6 cut(s)	254, 260, 1453, 1981, 2078, 2093
PluTI	GGCGCC	1 cut(s)	1963
PpsI	GAGTC	6 cut(s)	254, 260, 1453, 1981, 2078, 2093
PpuMI	RGGWCCY	2 cut(s)	853, 1199
Psp124BI	GAGCTC	1 cut(s)	394
Psp5II	RGGWCCY	2 cut(s)	853, 1199
Psp6I	CCWGG	2 cut(s)	385, 2478
PspFI	CCCAGC	1 cut(s)	2351
PspGI	CCWGG	2 cut(s)	385, 2478
PspN4I	GGNNCC	5 cut(s)	769, 855, 1646, 1961, 2452
PspPI	GGNCC	8 cut(s)	138, 631, 677, 853, 1199, 1489, 2113, 2450
PspPPI	RGGWCCY	2 cut(s)	853, 1199
PsrI	GAACNNNNNNTAC	2 cut(s)	1827, 1859
PstNI	CAGNNNCTG	2 cut(s)	1976, 2165
PsuI	RGATCY	4 cut(s)	1373, 1505, 1747, 2469
PvuII	CAGCTG	2 cut(s)	1250, 2162
RsaI	GTAC	7 cut(s)	506, 944, 1083, 1358, 2041, 2046, 2357
RsaNI	GTAC	7 cut(s)	505, 943, 1082, 1357, 2040, 2045, 2356
RseI	CAYNNNNRTG	3 cut(s)	639, 694, 1552
SacI	GAGCTC	1 cut(s)	394
SaqAI	TTAA	4 cut(s)	1500, 1682, 2187, 2289
Sau3AI	GATC	8 cut(s)	832, 1373, 1426, 1505, 1609, 1747, 1873, 2469
Sau96I	GGNCC	8 cut(s)	138, 631, 677, 853, 1199, 1489, 2113, 2450
SchI	GAGTC	6 cut(s)	254, 260, 1454, 1982, 2078, 2093
ScrFI	CCNGG	5 cut(s)	387, 454, 675, 676, 2480
SduI	GDGCHC	2 cut(s)	394, 2159
SfaNI	GCATC	6 cut(s)	872, 940, 1141, 1195, 1851, 2062
SfcI	CTRYAG	3 cut(s)	1377, 1617, 2322
SfoI	GGCGCC	1 cut(s)	1961
SinI	GGWCC	6 cut(s)	138, 631, 853, 1199, 1489, 2450
SmaI	CCCGGG	1 cut(s)	676
SmiI	ATTTAAAT	1 cut(s)	1683
SmiMI	CAYNNNNRTG	3 cut(s)	639, 694, 1552
SmlI	CTYRAG	3 cut(s)	230, 347, 827
SmoI	CTYRAG	3 cut(s)	230, 347, 827
SpeI	ACTAGT	1 cut(s)	2257
SseBI	AGGCCT	3 cut(s)	353, 712, 840
SspDI	GGCGCC	1 cut(s)	1959
SspMI	CTAG	5 cut(s)	167, 1350, 1493, 1964, 2258
SstI	GAGCTC	1 cut(s)	394
StuI	AGGCCT	3 cut(s)	353, 712, 840
StyD4I	CCNGG	5 cut(s)	385, 452, 673, 674, 2478
StyI	CCWWGG	2 cut(s)	1580, 1963
SwaI	ATTTAAAT	1 cut(s)	1683
TaaI	ACNGT	6 cut(s)	881, 1102, 1551, 1621, 2044, 2405
TaiI	ACGT	3 cut(s)	54, 345, 1358
TaqI	TCGA	5 cut(s)	405, 582, 1608, 1790, 1805
TauI	GCSGC	9 cut(s)	33, 39, 188, 207, 210, 213, 312, 315, 368
TfiI	GAWTC	8 cut(s)	461, 569, 968, 1008, 1109, 1802, 1891, 2192
Tru1I	TTAA	4 cut(s)	1500, 1682, 2187, 2289
Tru9I	TTAA	4 cut(s)	1500, 1682, 2187, 2289
TscAI	CASTG	4 cut(s)	50, 886, 894, 1107
TseFI	GTSAC	4 cut(s)	52, 687, 698, 2361
TseI	GCWGC	9 cut(s)	33, 539, 1247, 1250, 1979, 2162, 2165, 2343, 2389
Tsp45I	GTSAC	4 cut(s)	52, 687, 698, 2361
TspDTI	ATGAA	2 cut(s)	798, 1755
TspGWI	ACGGA	4 cut(s)	1400, 1446, 1903, 2084
TspMI	CCCGGG	1 cut(s)	674
TspRI	CASTG	4 cut(s)	50, 886, 894, 1107
Van91I	CCANNNNNTGG	1 cut(s)	2181
VneI	GTGCAC	1 cut(s)	2155
VpaK11BI	GGWCC	6 cut(s)	138, 631, 853, 1199, 1489, 2450
XapI	RAATTY	4 cut(s)	399, 1415, 1758, 2513
XbaI	TCTAGA	1 cut(s)	1349
XceI	RCATGY	5 cut(s)	418, 1030, 1179, 1268, 2147
XmaI	CCCGGG	1 cut(s)	674
XmaJI	CCTAGG	1 cut(s)	1963
XmnI	GAANNNNTTC	1 cut(s)	772
XspI	CTAG	5 cut(s)	167, 1350, 1493, 1964, 2258
Zsp2I	ATGCAT	1 cut(s)	1866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.