Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0012479

Physical Location & Seq

Genomic Coordinates Forward (+)

45309820 .. 45316871

Gene Structure 7052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009028

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGCTCCGCCTCTCCACCCTCCTTCTCCGCCACAACCGCCACCGCTGCCACCTCACCAAACCCTTCACCACCACTACCACCGCAACTAATCCTCTTCCTCTCACCGTCCCTCTATCTCACCCCATCCACCTCATATGGTCCTCCAACACCTCCCTCGGCAAAACCCTAGTCTCCACCGGCCTCGCCGCCTCGTCTCTCCTCTCCCGCCGCCGCCGCCGCCGCTCCTTCCTCTACCTCAAGCCCGTCCAGACTGGCTTCCCCGCCGACTCCGACTCCCGCTTCGTCTTCTCCAAACTCACTTCCCTCGCCCTCCGCCACCGCCGCCTCTCCCCTCATTTCTCTCTCCTCGCCTCCAATCACCTCCTCAAGGCCTCCGCCTCCGCCTCCGCCGCAGCGTCCCTATTAGCCCCCGGAGCTCCCGGAATTTACGATAATGGCATGTGCGATTTGGATTGGTCTGAGGAGAGGAGGGTTGCTGGGGAGAATTCCGGGAATGATGAGCCTTCAAAGCTTGTTTGTAAGACAATGTACGCTTGGAGTGACGCCGTTTCGCCACATTTGGCCGCCGAAAGGGAAAATGGAACTATTGAGGATTCAGCTTTGCTCGAAACGGTGCAGAGGTGTTTGGAAATTGGGGTTGGAAAAGAGAATATGGATCATTTTTGTGTGGTTGAGACGGCTGGCGGGGTTGCCAGTCCAGGGCCTTCTGGTTCACTTCAATGTGACCTGTACAGGCCTTTTCGTTTGCCTGCAATTCTTGTTGGAGATGGGCGGTTAGGTGGGATTTCCGGAACAATTTCAGCTTATGAAACTTTGAAACTCCGGGGTTATGATGTTGTCGCGGTTGTTCTGGAGGATCATGGCCTTGTAAATGAGGTGCCTTTAGCATCATATCTTAGAAACAGTGTTCCAGTGCTTGTTCTGCCACCTGTTCCACAAGACTTGTCAGATGACCTTATGGAATGGTACGATGATGCTCATAATGTTTTTGATTCACTCATGGAGATAATGCTATCAGCTTACTCTGAGAGAGTCAAGAGATTGCGTGACATGCCAAAGAGGGCAGTAGATGTTTTTTGGTGGCCATTTACTCAGCACACATTTGTACCAGAAGGAAATGTTACAGTGATTGATTCTCGCTGTGGTGAGAACTTTGCAGTCTTCAAGAATGATGATGCCATAACTGAACAGTTTGACGCTTGTGCAAGTTGGTGGACTCAAGGACCTGATGCTACTTTACAGACTGAGCTTGCCAGGGATATCGGTTATGCAGCTGCAAGATTTGGGCATGTAATGTTTCCTGAGAATGTTTATGAGCCAGCCTTAGAATGTGCAGAACTTTTGCTTGAAGGTGTTGGAAAAGATTGGGCTTCTCGAACGTACTTTTCGGACAATGGATCTACAGCAATTGAGATTGCACTGAAGATGGCATTCCGTAAATTCTCTCATGATCACGGACTTCTTTTGGAATGTCTGAAGGACAACTCAACTGAGAGATGTCCAGAGCTTGTGGTCCTAGCTCTTAATGGATCTTATCATGGTGATACTTTGGGTGCCATGGAAGCGCAAGCACCGTCATGTTATACCGGCTTCCTACAACAACCATGGTATAAAGGAAGAGGTTTTTTTCTTGATCCTCCTACGGTCTTTTTGAGCAAGAATATGTGGAACCTTTCCCTACCTGAAGGATTGCATTCTCCGGATTTAAATGTTAAGAATATGACCTTTTGTTCCCTTGATGATATACTAAACAAGAGCAGGGACAAGTCAGATCTTGCTGTAATTTATTCTGCATTCATATCACATCAGTTATCAAAGTTTCCTGAATCGAAAGGGCTAATTGGAGCATTGATTATTGAACCAGTTATACACGGTGCTGGAGGAATGCATATGGTTGATCCACTTTTCCAACGGGTTCTTGTGAATGAATGCCGGAATAAAAACATTCCCGTTATCTTTGATGAGGTCTTCACTGGTTTCTGGCGCCTGGGAACAGAGTCTGCTGCAGAACTTCTATGCTGTTTTCCAGATATAGCCTGTTTCGCGAAGCTGTTGACAGGTGGGACTATACCCTTGTCTGCTACATTGGCTACGAATGCTGTATTTGACTCATTTATTGGAGACTCAAAGCTGAAGGCCCTTTTGCATGGACACTCATATTCTGCACATGCCATCGGGTGCACAGCTGCTGCTAAATCCATCAGATGGTTTAAAGATTCTGATAGAAATCCTAATATCAGTTCCAAAGGAATCTTGCTCAGAGAGCTATGGGATAACAAACTAGTGTGCCAAATCTCTTCACATCCTGGAATTAAAAGAGTGGTTGTGTTAGGAACGCTTTGCGCTATAGAACTCCAAGCACAAGGCTGCAATGCTGGGTATGGGTCACTGTTTGCAAGCTCTCTTGTGAAGCAGCTCCGAGAAGACGGTGTTTACATGAGGCCTTTGGGAAATGTCATATATCTCATGTGCGGACCCTGCACATCTCCTAAGATCTGCAACCAGGCACTCAGAAAAGTTTACAGAAGACTTGAAGAATTTAGCCAATCTCAACAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004015 GO:0004141 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006768 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009102 GO:0009108 GO:0009110 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0016874 GO:0016879 GO:0016882 GO:0017144 GO:0018130 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

AAA_26 Aminotran_3

Protein Analysis

854

Amino Acids

94.04

Weight (kDa)

6.35

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_26	PF13500	175 - 285	2.6e-09	AAA domain
Aminotran_3	PF00202	424 - 525	1.2e-08	Aminotransferase class-III
Aminotran_3	PF00202	608 - 837	3.8e-33	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57590
fragaria_vesca	FvH4_4g09130 FvH4_4g09130
malus_domestica	MD13G1267300.v1.1
prunus_persica	Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1
pyrus_communis	pycom13g22810
rosa_chinensis	RchiOBHm_Chr4g0403051
rosa_laevigata	RLG00000009028
rosa_multiflora	Rmu_co8501967.1_g000001 Rmu_sc0001023.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347740
rosa_rugosa	Rorug04G0040400
rosa_samantha	Rh4AG117700 Rh4BG110200 Rh4CG124500 Rh4DG109600
rosa_wichuraiana	Rw4G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	877, 1553, 1983
AccB7I	CCANNNNNTGG	1 cut(s)	2205
AccBSI	CCGCTC	1 cut(s)	222
AccII	CGCG	2 cut(s)	842, 2045
AccIII	TCCGGA	2 cut(s)	788, 1699
AclWI	GGATC	6 cut(s)	663, 864, 1405, 1537, 1628, 1892
AcoI	YGGCCR	2 cut(s)	561, 1082
AcsI	RAATTY	4 cut(s)	423, 484, 1439, 2537
AcuI	CTGAAG	4 cut(s)	1442, 1496, 1704, 2153
AcyI	GRCGYC	2 cut(s)	543, 1984
AfaI	GTAC	5 cut(s)	530, 731, 968, 1107, 1382
AfiI	CCNNNNNNNGG	4 cut(s)	367, 570, 699, 2205
AgsI	TTSAA	7 cut(s)	507, 719, 817, 1165, 1349, 1859, 2534
AhlI	ACTAGT	1 cut(s)	2281
AjnI	CCWGG	5 cut(s)	697, 1253, 1986, 2305, 2502
AjuI	GAANNNNNNNTTGG	2 cut(s)	621, 653
Alw21I	GWGCWC	2 cut(s)	418, 2183
Alw26I	GTCTC	4 cut(s)	175, 198, 668, 2115
Alw44I	GTGCAC	1 cut(s)	2179
AlwI	GGATC	6 cut(s)	663, 864, 1405, 1537, 1628, 1892
AlwNI	CAGNNNCTG	2 cut(s)	2000, 2189
Aor13HI	TCCGGA	2 cut(s)	788, 1699
AoxI	GGCC	9 cut(s)	178, 369, 561, 701, 734, 862, 1082, 2136, 2441
ApaLI	GTGCAC	1 cut(s)	2179
ApeKI	GCWGC	9 cut(s)	45, 392, 1271, 1274, 2003, 2186, 2189, 2367, 2413
ApoI	RAATTY	4 cut(s)	423, 484, 1439, 2537
ArsI	GACNNNNNNTTYG	4 cut(s)	153, 185, 263, 295
Asp700I	GAANNNNTTC	1 cut(s)	796
AspLEI	GCGC	3 cut(s)	1567, 1986, 2345
AspS9I	GGNCC	6 cut(s)	138, 701, 1223, 1513, 2137, 2474
AsuC2I	CCSGG	4 cut(s)	411, 420, 490, 824
AsuHPI	GGTGA	7 cut(s)	46, 58, 94, 110, 350, 1157, 1553
AvaII	GGWCC	4 cut(s)	138, 1223, 1513, 2474
BaeGI	GKGCMC	1 cut(s)	2183
BaeI	ACNNNNGTAYC	2 cut(s)	1089, 1122
BalI	TGGCCA	1 cut(s)	1084
BanI	GGYRCC	3 cut(s)	877, 1553, 1983
BanII	GRGCYC	1 cut(s)	418
BbsI	GAAGAC	5 cut(s)	277, 1153, 1960, 2430, 2533
Bbv12I	GWGCWC	2 cut(s)	418, 2183
BbvI	GCAGC	9 cut(s)	32, 404, 1261, 1283, 1990, 2173, 2176, 2354, 2425
BccI	CCATC	6 cut(s)	131, 761, 1420, 2180, 2199, 2207
BceAI	ACGGC	2 cut(s)	530, 693
BciT130I	CCWGG	5 cut(s)	699, 1255, 1988, 2307, 2504
BclI	TGATCA	1 cut(s)	1450
BcnI	CCSGG	4 cut(s)	411, 420, 490, 824
BcoDI	GTCTC	4 cut(s)	175, 198, 668, 2115
BcuI	ACTAGT	1 cut(s)	2281
BfaI	CTAG	3 cut(s)	167, 1517, 2282
BfmI	CTRYAG	3 cut(s)	1401, 2004, 2346
BfoI	RGCGCY	1 cut(s)	1987
BglII	AGATCT	2 cut(s)	1771, 2493
Bme1390I	CCNGG	9 cut(s)	411, 420, 490, 699, 824, 1255, 1988, 2307, 2504
Bme18I	GGWCC	4 cut(s)	138, 1223, 1513, 2474
BmgT120I	GGNCC	6 cut(s)	138, 701, 1223, 1513, 2137, 2474
BmiI	GGNNCC	5 cut(s)	879, 1555, 1670, 1985, 2476
BmrFI	CCNGG	9 cut(s)	411, 420, 490, 699, 824, 1255, 1988, 2307, 2504
BmsI	GCATC	4 cut(s)	896, 964, 1165, 1219
BpiI	GAAGAC	5 cut(s)	277, 1153, 1960, 2430, 2533
BpmI	CTGGAG	2 cut(s)	872, 1899
BpuEI	CTTGAG	3 cut(s)	221, 350, 1203
BpuMI	CCSGG	4 cut(s)	411, 420, 490, 824
BsaBI	GATNNNNATC	1 cut(s)	2226
BsaHI	GRCGYC	2 cut(s)	543, 1984
BsaJI	CCNNGG	8 cut(s)	154, 409, 698, 823, 1254, 1557, 1604, 1987
BsaWI	WCCGGW	2 cut(s)	788, 1699
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	4 cut(s)	367, 570, 699, 2205
Bse118I	RCCGGY	2 cut(s)	176, 1586
Bse1I	ACTGG	5 cut(s)	256, 693, 911, 1862, 1978
Bse3DI	GCAATG	1 cut(s)	2377
Bse8I	GATNNNNATC	1 cut(s)	2226
BseAI	TCCGGA	2 cut(s)	788, 1699
BseBI	CCWGG	5 cut(s)	699, 1255, 1988, 2307, 2504
BseDI	CCNNGG	8 cut(s)	154, 409, 698, 823, 1254, 1557, 1604, 1987
BseGI	GGATG	2 cut(s)	123, 2302
BseJI	GATNNNNATC	1 cut(s)	2226
BseLI	CCNNNNNNNGG	4 cut(s)	367, 570, 699, 2205
BseMI	GCAATG	1 cut(s)	2377
BseMII	CTCAG	8 cut(s)	450, 1017, 1106, 1236, 1293, 1482, 2272, 2524
BseNI	ACTGG	5 cut(s)	256, 693, 911, 1862, 1978
BseRI	GAGGAG	5 cut(s)	188, 335, 353, 476, 481
BseSI	GKGCMC	1 cut(s)	2183
BseXI	GCAGC	9 cut(s)	32, 404, 1261, 1283, 1990, 2173, 2176, 2354, 2425
BseYI	CCCAGC	2 cut(s)	476, 2375
BsgI	GTGCAG	4 cut(s)	635, 1353, 2148, 2464
Bsh1236I	CGCG	2 cut(s)	842, 2045
BshFI	GGCC	9 cut(s)	180, 371, 563, 703, 736, 864, 1084, 2138, 2443
BshNI	GGYRCC	3 cut(s)	877, 1553, 1983
BsiHKAI	GWGCWC	2 cut(s)	418, 2183
BsiSI	CCGG	9 cut(s)	177, 411, 420, 489, 789, 823, 1587, 1700, 1933
BslFI	GGGAC	4 cut(s)	92, 382, 1775, 2077
BslI	CCNNNNNNNGG	4 cut(s)	367, 570, 699, 2205
BsmAI	GTCTC	4 cut(s)	175, 198, 668, 2115
BsmBI	CGTCTC	2 cut(s)	198, 668
BsmFI	GGGAC	4 cut(s)	92, 382, 1775, 2077
BsmI	GAATGC	6 cut(s)	1430, 1693, 1793, 1890, 1934, 2101
BsnI	GGCC	9 cut(s)	180, 371, 563, 703, 736, 864, 1084, 2138, 2443
Bsp1286I	GDGCHC	2 cut(s)	418, 2183
Bsp13I	TCCGGA	2 cut(s)	788, 1699
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	9 cut(s)	655, 856, 1397, 1450, 1529, 1633, 1771, 1897, 2493
Bsp19I	CCATGG	2 cut(s)	1557, 1604
Bsp68I	TCGCGA	1 cut(s)	2045
BspANI	GGCC	9 cut(s)	180, 371, 563, 703, 736, 864, 1084, 2138, 2443
BspCNI	CTCAG	8 cut(s)	451, 1018, 1105, 1237, 1294, 1483, 2271, 2523
BspEI	TCCGGA	2 cut(s)	788, 1699
BspFNI	CGCG	2 cut(s)	842, 2045
BspHI	TCATGA	1 cut(s)	1447
BspLI	GGNNCC	5 cut(s)	879, 1555, 1670, 1985, 2476
BspMAI	CTGCAG	1 cut(s)	2008
BspPI	GGATC	6 cut(s)	663, 864, 1405, 1537, 1628, 1892
BspT107I	GGYRCC	3 cut(s)	877, 1553, 1983
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	2377
BsrFI	RCCGGY	2 cut(s)	176, 1586
BsrGI	TGTACA	1 cut(s)	729
BsrI	ACTGG	5 cut(s)	256, 693, 911, 1862, 1978
BssAI	RCCGGY	2 cut(s)	176, 1586
BssECI	CCNNGG	8 cut(s)	154, 409, 698, 823, 1254, 1557, 1604, 1987
BssMI	GATC	9 cut(s)	655, 856, 1397, 1450, 1529, 1633, 1771, 1897, 2493
BssNI	GRCGYC	2 cut(s)	543, 1984
BssT1I	CCWWGG	2 cut(s)	1557, 1604
Bst2UI	CCWGG	5 cut(s)	699, 1255, 1988, 2307, 2504
Bst6I	CTCTTC	3 cut(s)	99, 1612, 2302
BstACI	GRCGYC	2 cut(s)	543, 1984
BstAUI	TGTACA	1 cut(s)	729
BstC8I	GCNNGC	6 cut(s)	682, 750, 1251, 1320, 1569, 2398
BstDSI	CCRYGG	2 cut(s)	1557, 1604
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	123, 2302
BstFNI	CGCG	2 cut(s)	842, 2045
BstH2I	RGCGCY	1 cut(s)	1987
BstHHI	GCGC	3 cut(s)	1567, 1986, 2345
BstKTI	GATC	9 cut(s)	658, 859, 1400, 1453, 1532, 1636, 1774, 1900, 2496
BstMAI	GTCTC	4 cut(s)	175, 198, 668, 2115
BstMBI	GATC	9 cut(s)	655, 856, 1397, 1450, 1529, 1633, 1771, 1897, 2493
BstNI	CCWGG	5 cut(s)	699, 1255, 1988, 2307, 2504
BstNSI	RCATGY	4 cut(s)	442, 1054, 1292, 2171
BstSCI	CCNGG	9 cut(s)	409, 418, 488, 697, 822, 1253, 1986, 2305, 2502
BstSFI	CTRYAG	3 cut(s)	1401, 2004, 2346
BstSLI	GKGCMC	1 cut(s)	2183
BstUI	CGCG	2 cut(s)	842, 2045
BstV1I	GCAGC	9 cut(s)	32, 404, 1261, 1283, 1990, 2173, 2176, 2354, 2425
BstV2I	GAAGAC	5 cut(s)	277, 1153, 1960, 2430, 2533
BstX2I	RGATCY	4 cut(s)	1397, 1529, 1771, 2493
BstYI	RGATCY	4 cut(s)	1397, 1529, 1771, 2493
BsuRI	GGCC	9 cut(s)	180, 371, 563, 703, 736, 864, 1084, 2138, 2443
BtgI	CCRYGG	2 cut(s)	1557, 1604
BtsCI	GGATG	2 cut(s)	123, 2302
BtsIMutI	CAGTG	6 cut(s)	910, 918, 1131, 1418, 1971, 2387
BtuMI	TCGCGA	1 cut(s)	2045
Cac8I	GCNNGC	6 cut(s)	682, 750, 1251, 1320, 1569, 2398
CaiI	CAGNNNCTG	2 cut(s)	2000, 2189
CciI	TCATGA	1 cut(s)	1447
CfoI	GCGC	3 cut(s)	1567, 1986, 2345
Cfr10I	RCCGGY	2 cut(s)	176, 1586
Cfr13I	GGNCC	6 cut(s)	138, 701, 1223, 1513, 2137, 2474
CseI	GACGC	3 cut(s)	384, 551, 1205
Csp6I	GTAC	5 cut(s)	529, 730, 967, 1106, 1381
CspCI	CAANNNNNGTGG	2 cut(s)	924, 959
CviQI	GTAC	5 cut(s)	529, 730, 967, 1106, 1381
DinI	GGCGCC	1 cut(s)	1985
DpnI	GATC	9 cut(s)	657, 858, 1399, 1452, 1531, 1635, 1773, 1899, 2495
DpnII	GATC	9 cut(s)	655, 856, 1397, 1450, 1529, 1633, 1771, 1897, 2493
DraI	TTTAAA	2 cut(s)	1707, 2212
EaeI	YGGCCR	2 cut(s)	561, 1082
Eam1104I	CTCTTC	3 cut(s)	99, 1612, 2302
EarI	CTCTTC	3 cut(s)	99, 1612, 2302
EciI	GGCGGA	5 cut(s)	17, 302, 364, 370, 376
Ecl136II	GAGCTC	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	1557, 1604
Eco147I	AGGCCT	3 cut(s)	371, 736, 2443
Eco24I	GRGCYC	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	1261
Eco47I	GGWCC	4 cut(s)	138, 1223, 1513, 2474
Eco53kI	GAGCTC	1 cut(s)	416
Eco57I	CTGAAG	4 cut(s)	1442, 1496, 1704, 2153
EcoICRI	GAGCTC	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	3 cut(s)	701, 1223, 2137
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	5 cut(s)	697, 1253, 1986, 2305, 2502
EcoRV	GATATC	1 cut(s)	1261
EcoT14I	CCWWGG	2 cut(s)	1557, 1604
EcoT22I	ATGCAT	1 cut(s)	1890
EcoT38I	GRGCYC	1 cut(s)	418
EgeI	GGCGCC	1 cut(s)	1985
EheI	GGCGCC	1 cut(s)	1985
ErhI	CCWWGG	2 cut(s)	1557, 1604
Esp3I	CGTCTC	2 cut(s)	198, 668
FaqI	GGGAC	4 cut(s)	92, 382, 1775, 2077
FauI	CCCGC	4 cut(s)	212, 268, 284, 677
FauNDI	CATATG	2 cut(s)	134, 1890
FbaI	TGATCA	1 cut(s)	1450
FokI	GGATG	2 cut(s)	110, 2289
FriOI	GRGCYC	1 cut(s)	418
FspBI	CTAG	3 cut(s)	167, 1517, 2282
GlaI	GCGC	3 cut(s)	1566, 1985, 2344
GsaI	CCCAGC	2 cut(s)	480, 2379
GsuI	CTGGAG	2 cut(s)	872, 1899
HaeII	RGCGCY	1 cut(s)	1987
HaeIII	GGCC	9 cut(s)	180, 371, 563, 703, 736, 864, 1084, 2138, 2443
HapII	CCGG	9 cut(s)	177, 411, 420, 489, 789, 823, 1587, 1700, 1933
HgaI	GACGC	3 cut(s)	384, 551, 1205
HhaI	GCGC	3 cut(s)	1567, 1986, 2345
Hin1I	GRCGYC	2 cut(s)	543, 1984
Hin6I	GCGC	3 cut(s)	1565, 1984, 2343
HinP1I	GCGC	3 cut(s)	1565, 1984, 2343
HincII	GTYRAC	1 cut(s)	2055
HindII	GTYRAC	1 cut(s)	2055
HindIII	AAGCTT	1 cut(s)	509
HpaII	CCGG	9 cut(s)	177, 411, 420, 489, 789, 823, 1587, 1700, 1933
HphI	GGTGA	7 cut(s)	46, 58, 94, 110, 350, 1157, 1553
Hpy166II	GTNNAC	6 cut(s)	713, 1215, 2055, 2181, 2434, 2521
Hpy8I	GTNNAC	6 cut(s)	713, 1215, 2055, 2181, 2434, 2521
HpyCH4IV	ACGT	1 cut(s)	1379
HpySE526I	ACGT	1 cut(s)	1379
Hsp92I	GRCGYC	2 cut(s)	543, 1984
HspAI	GCGC	3 cut(s)	1565, 1984, 2343
KasI	GGCGCC	1 cut(s)	1983
Kpn2I	TCCGGA	2 cut(s)	788, 1699
Ksp22I	TGATCA	1 cut(s)	1450
Kzo9I	GATC	9 cut(s)	655, 856, 1397, 1450, 1529, 1633, 1771, 1897, 2493
LmnI	GCTCC	6 cut(s)	9, 227, 413, 421, 1844, 2421
Lsp1109I	GCAGC	9 cut(s)	32, 404, 1261, 1283, 1990, 2173, 2176, 2354, 2425
LweI	GCATC	4 cut(s)	896, 964, 1165, 1219
MaeI	CTAG	3 cut(s)	167, 1517, 2282
MaeII	ACGT	1 cut(s)	1379
MaeIII	GTNAC	5 cut(s)	539, 722, 1046, 1120, 2385
MalI	GATC	9 cut(s)	657, 858, 1399, 1452, 1531, 1635, 1773, 1899, 2495
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	9 cut(s)	655, 856, 1397, 1450, 1529, 1633, 1771, 1897, 2493
MfeI	CAATTG	1 cut(s)	1407
MflI	RGATCY	4 cut(s)	1397, 1529, 1771, 2493
MhlI	GDGCHC	2 cut(s)	418, 2183
MlsI	TGGCCA	1 cut(s)	1084
MluNI	TGGCCA	1 cut(s)	1084
Mly113I	GGCGCC	1 cut(s)	1984
MlyI	GAGTC	7 cut(s)	260, 266, 1041, 1210, 2006, 2102, 2117
MmeI	TCCRAC	6 cut(s)	168, 294, 619, 742, 1336, 1933
Mox20I	TGGCCA	1 cut(s)	1084
Mph1103I	ATGCAT	1 cut(s)	1890
MroI	TCCGGA	2 cut(s)	788, 1699
MroXI	GAANNNNTTC	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	1084
MseI	TTAA	6 cut(s)	1524, 1706, 1713, 2211, 2313, 2560
MslI	CAYNNNNRTG	3 cut(s)	663, 718, 1576
Msp20I	TGGCCA	1 cut(s)	1084
MspA1I	CMGCKG	3 cut(s)	45, 1274, 2186
MspI	CCGG	9 cut(s)	177, 411, 420, 489, 789, 823, 1587, 1700, 1933
MspR9I	CCNGG	9 cut(s)	411, 420, 490, 699, 824, 1255, 1988, 2307, 2504
MunI	CAATTG	1 cut(s)	1407
Mva1269I	GAATGC	6 cut(s)	1430, 1693, 1793, 1890, 1934, 2101
MvaI	CCWGG	5 cut(s)	699, 1255, 1988, 2307, 2504
MvnI	CGCG	2 cut(s)	842, 2045
NarI	GGCGCC	1 cut(s)	1984
NciI	CCSGG	4 cut(s)	411, 420, 490, 824
NcoI	CCATGG	2 cut(s)	1557, 1604
NdeI	CATATG	2 cut(s)	134, 1890
NdeII	GATC	9 cut(s)	655, 856, 1397, 1450, 1529, 1633, 1771, 1897, 2493
NlaIV	GGNNCC	5 cut(s)	879, 1555, 1670, 1985, 2476
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	4 cut(s)	539, 722, 1046, 2385
NruI	TCGCGA	1 cut(s)	2045
NsiI	ATGCAT	1 cut(s)	1890
NspI	RCATGY	4 cut(s)	442, 1054, 1292, 2171
PagI	TCATGA	1 cut(s)	1447
PceI	AGGCCT	3 cut(s)	371, 736, 2443
PctI	GAATGC	6 cut(s)	1430, 1693, 1793, 1890, 1934, 2101
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	6 cut(s)	593, 992, 1133, 1826, 2216, 2250
PflMI	CCANNNNNTGG	1 cut(s)	2205
PfoI	TCCNGGA	3 cut(s)	418, 488, 2305
PleI	GAGTC	7 cut(s)	260, 266, 1040, 1210, 2005, 2102, 2117
PluTI	GGCGCC	1 cut(s)	1987
PpsI	GAGTC	7 cut(s)	260, 266, 1040, 1210, 2005, 2102, 2117
PpuMI	RGGWCCY	1 cut(s)	1223
Psp124BI	GAGCTC	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	1223
Psp6I	CCWGG	5 cut(s)	697, 1253, 1986, 2305, 2502
PspFI	CCCAGC	2 cut(s)	476, 2375
PspGI	CCWGG	5 cut(s)	697, 1253, 1986, 2305, 2502
PspN4I	GGNNCC	5 cut(s)	879, 1555, 1670, 1985, 2476
PspPI	GGNCC	6 cut(s)	138, 701, 1223, 1513, 2137, 2474
PspPPI	RGGWCCY	1 cut(s)	1223
PsrI	GAACNNNNNNTAC	2 cut(s)	1851, 1883
PstI	CTGCAG	1 cut(s)	2008
PstNI	CAGNNNCTG	2 cut(s)	2000, 2189
PsuI	RGATCY	4 cut(s)	1397, 1529, 1771, 2493
PvuII	CAGCTG	2 cut(s)	1274, 2186
RruI	TCGCGA	1 cut(s)	2045
RsaI	GTAC	5 cut(s)	530, 731, 968, 1107, 1382
RsaNI	GTAC	5 cut(s)	529, 730, 967, 1106, 1381
RseI	CAYNNNNRTG	3 cut(s)	663, 718, 1576
SacI	GAGCTC	1 cut(s)	418
SaqAI	TTAA	6 cut(s)	1524, 1706, 1713, 2211, 2313, 2560
Sau3AI	GATC	9 cut(s)	655, 856, 1397, 1450, 1529, 1633, 1771, 1897, 2493
Sau96I	GGNCC	6 cut(s)	138, 701, 1223, 1513, 2137, 2474
SchI	GAGTC	7 cut(s)	260, 266, 1041, 1210, 2006, 2102, 2117
ScrFI	CCNGG	9 cut(s)	411, 420, 490, 699, 824, 1255, 1988, 2307, 2504
SduI	GDGCHC	2 cut(s)	418, 2183
SfaNI	GCATC	4 cut(s)	896, 964, 1165, 1219
SfcI	CTRYAG	3 cut(s)	1401, 2004, 2346
SfoI	GGCGCC	1 cut(s)	1985
SinI	GGWCC	4 cut(s)	138, 1223, 1513, 2474
SmiI	ATTTAAAT	1 cut(s)	1707
SmiMI	CAYNNNNRTG	3 cut(s)	663, 718, 1576
SmlI	CTYRAG	3 cut(s)	236, 365, 1218
SmoI	CTYRAG	3 cut(s)	236, 365, 1218
SpeI	ACTAGT	1 cut(s)	2281
SseBI	AGGCCT	3 cut(s)	371, 736, 2443
SspDI	GGCGCC	1 cut(s)	1983
SspMI	CTAG	3 cut(s)	167, 1517, 2282
SstI	GAGCTC	1 cut(s)	418
StuI	AGGCCT	3 cut(s)	371, 736, 2443
StyD4I	CCNGG	9 cut(s)	409, 418, 488, 697, 822, 1253, 1986, 2305, 2502
StyI	CCWWGG	2 cut(s)	1557, 1604
SwaI	ATTTAAAT	1 cut(s)	1707
TaiI	ACGT	1 cut(s)	1382
TaqI	TCGA	3 cut(s)	606, 1375, 1829
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	9 cut(s)	188, 210, 213, 216, 219, 222, 324, 392, 566
TfiI	GAWTC	6 cut(s)	593, 992, 1133, 1826, 2216, 2250
Tru1I	TTAA	6 cut(s)	1524, 1706, 1713, 2211, 2313, 2560
Tru9I	TTAA	6 cut(s)	1524, 1706, 1713, 2211, 2313, 2560
TscAI	CASTG	6 cut(s)	910, 918, 1131, 1425, 1978, 2394
TseFI	GTSAC	4 cut(s)	539, 722, 1046, 2385
TseI	GCWGC	9 cut(s)	45, 392, 1271, 1274, 2003, 2186, 2189, 2367, 2413
Tsp45I	GTSAC	4 cut(s)	539, 722, 1046, 2385
TspDTI	ATGAA	3 cut(s)	822, 1786, 1941
TspGWI	ACGGA	2 cut(s)	1424, 1470
TspRI	CASTG	6 cut(s)	910, 918, 1131, 1425, 1978, 2394
Van91I	CCANNNNNTGG	1 cut(s)	2205
VneI	GTGCAC	1 cut(s)	2179
VpaK11BI	GGWCC	4 cut(s)	138, 1223, 1513, 2474
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	4 cut(s)	423, 484, 1439, 2537
XceI	RCATGY	4 cut(s)	442, 1054, 1292, 2171
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	3 cut(s)	167, 1517, 2282
Zsp2I	ATGCAT	1 cut(s)	1890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.