Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012479

Physical Location & Seq

Genomic Coordinates Forward (+)

34850932 .. 34857952

Gene Structure 7021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1267300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2556 bp

ATGCTCACCCTCACTTCTCTCCTTCTGCGCCCCGCCCGCCACTTCGTCAAACCCCTCTCCACCAGAACCGCCTCCACCGCCACCACTCCTCCGCCTCCTCTCACCGTCCCCCTCTCTCACCCCATCTACCTCATATGGTCCGCCAACACCTCCCTCGGCAAAACCCTAGTCTCCACCGGTCTCGCCGCCTCCTCTCTCCTCTCCAATCGCCACCCCCGCCGCCGCTCTTTCCTCTATCTCAAGCCCATTCAAACCGGCTACCCGGCCGACTCCGACTCCCATTTCGTCTTCTCCAAACTCACCTCCCTCGCCCCCCGCCGCTCTCCCCACCTCTCCCTCCTCGCCTCCAATCACGTTCTCAAGGCCTCTGCCTCCGCCGCCAGCTCCATCTTAGCCCCCCAAATTCCGCCAAATCACGGCAAGGGCATGTGTGATTTGGACTGGTGTGAAGAGAGCAGGGTTGATGGTGGCAATTCTGGGAATGCTCCGAATTCGGAGCTGGTTTGTAAGACAATGTACGCTTGGGGAGACCCTGTCTCGCCTCACTTAGCGGCTGAGAGAGAAAGTGGTGCGGTGGAGGACTCGACCTTGCTTGAATTGCTGCAGAGGTGTTTGGAAATTGGGTTTGGAAAGGAGAAAATGGATTCTTTCTGTGTGATTGAGACCGCTGGTGGGGTTGCTAGTCCAGGGCCTTCTGGATCGCTTCAATGTGACTTGTACAGACCTTTCCGTTTACCTGCAATTCTTGTTGGAGATGGACGGCTAGGTGGTATTTCTGGAACCATTTCAGCTTATGAAAGTTTGAAACTCAGAGGTTATGATGTTGTTGCTGTTGTTCTTGAGGATCATGGCCTTGTAAATGAGGTTCCGTTAGGATCATATTTTCGAAACAGTGTTCCAGTACTTGTGCTGCCGCCTATTCCACAAGACTTGTCAGATGACCTTGTGGAATGGTATGACGATACTCAGAATGTATTTGATTCGTTGATGGAAATAATGCTATTAGCCCACTCTGAACGAATCAAGAGATTGCATAACATGCCGAAAAGGGCCGTAGATGTTTTTTGGTGGCCATTTACTCAGCACACATTTGTACCAGAAGGAGATGTTACAGTGATCGATTCACGCTGTGGTGAAAACTTTTCAGTCTTCAAGGCTCGGAATGATGATGTTATGATTCAACAATTTGACGCATGTGCAAGTTGGTGGACTCAAGGACCCGATGCTACTTTACAGACTGAGCTTGCAAGGGATATGGGTTATGCAGCTGCAAGATTTGGGCATGTGATGTTTCCTGAGAATGTTTATGAGCCAGCCTTAGAATGTGCTGAACTTTTGCTTGAAGGTGTTGGAAAAGGTTGGGCTTCTCGAACATATTTTTCGGATAATGGATCGACAGCAATTGAGATTGCATTGAAGATGGCGTTCCGTAAATTCTCTTATGATCATGGAATTCTTTTAGATCATCTCAAGGATAACTCAGCTGAGAGACATCCGGAACTTGTGGTCCTTGCTCTGAGAGGATCTTATCATGGCGATACTTTGGGTGCTATGGAAGCACAGGCACCATCATCTTATACAGGCTTTCTCCAACAACCATGGTATAATGGAAGAGGTTTTTTCCTTGATCCTCCCACAATCTTTTTGTACAACAATATGTGGAGCCTTTCGCTACCTAAAGGGTTGGATTCTCAGATTTTGGATCTTAAAAATTTGACCTTCTGTTCCCGTGATAATGTTTTCGACAAGAGCAGGGACAAGTCAGATATTGCTGCTCTTTATTCAACACACATATCAGAACAGTTATCAAAGTTCCCTGAATCAAAAGGGTTAATTGGATCTTTGATTATTGAACCAGTCATACAAGCTGCCGGAGGAATGCATATGGTTGATCCACTTTTCCAGCGGGTTCTTGTAAATGAGTGCCGGACTAGAAATATTCCCATTATCTTTGATGAGGTGTTCACTGGTTTCTGGCGGCTAGGAACAGAGTCCGCAGCAGAATTACTATGTTGTTTTCCAGATATAGCATGCTTCGGGAAGTTGCTGACTGGTGGGACTGTGCCCTTGGCTGCCACATTGACTACAAGTGCCATATTTGACTCATTTATTGGAGACTCAAAGCTAAAGGCCCTTCTGCATGGACACTCATATTCTGCACATGCCATCGGGTGCACAGCAGCTGCTAAATCCATAAGATGGTTTAAGGATTCGCAGAGAAATCCTAATATCACGTCCAAAGGAAGCTTGCTTAGCGAGTTATGGGATGAAAAGCTAGTGTACCAGATCTCTTCACATCCTGCAATTCAAAGAGTGGTTGTGTTGGGGACACTCTGTGCTGTAGAGCTTCGAGTAGAAGGCTCCAATGCTGGGTATGGGTCACTCTATGCAAGCTCTCTTTTGAAGAAGCTCCGGGAAGATGGAGTTTACATGAGGGCGCTGGGACATGTCATATATCTCATGGGCGGACCCTGCACGTCTCCTAAGGTTTGCAAGCTAGTACTCGTTAAAGTTTGTAGAAGACTCGAAGAACTTAGCCAAACTGAAAACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004015 GO:0004141 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006768 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009102 GO:0009108 GO:0009110 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0016874 GO:0016879 GO:0016882 GO:0017144 GO:0018130 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

AAA_26 Aminotran_3

Protein Analysis

852

Amino Acids

93.5

Weight (kDa)

6.08

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_26	PF13500	173 - 281	3.4e-08	AAA domain
Aminotran_3	PF00202	422 - 525	3.6e-08	Aminotransferase class-III
Aminotran_3	PF00202	599 - 821	4.8e-31	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57590
fragaria_vesca	FvH4_4g09130 FvH4_4g09130
malus_domestica	MD13G1267300.v1.1
prunus_persica	Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1
pyrus_communis	pycom13g22810
rosa_chinensis	RchiOBHm_Chr4g0403051
rosa_laevigata	RLG00000009028
rosa_multiflora	Rmu_co8501967.1_g000001 Rmu_sc0001023.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347740
rosa_rugosa	Rorug04G0040400
rosa_samantha	Rh4AG117700 Rh4BG110200 Rh4CG124500 Rh4DG109600
rosa_wichuraiana	Rw4G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	745
AccB1I	GGYRCC	1 cut(s)	1564
AccB7I	CCANNNNNTGG	1 cut(s)	2199
AccBSI	CCGCTC	2 cut(s)	225, 321
AccIII	TCCGGA	1 cut(s)	1495
AclWI	GGATC	9 cut(s)	706, 852, 883, 1399, 1531, 1622, 1710, 1846, 1886
AcoI	YGGCCR	2 cut(s)	264, 1070
AcsI	RAATTY	5 cut(s)	402, 490, 1433, 1452, 1711
AdeI	CACNNNGTG	2 cut(s)	1130, 2336
AfaI	GTAC	7 cut(s)	518, 719, 903, 1095, 1649, 2282, 2502
AfiI	CCNNNNNNNGG	4 cut(s)	416, 672, 2199, 2370
AflIII	ACRYGT	1 cut(s)	2446
AgeI	ACCGGT	1 cut(s)	176
AjiI	CACGTC	2 cut(s)	2235, 2478
AjnI	CCWGG	1 cut(s)	685
AjuI	GAANNNNNNNTTGG	2 cut(s)	609, 641
AloI	GAACNNNNNNTCC	2 cut(s)	1491, 1523
Alw21I	GWGCWC	1 cut(s)	2177
Alw26I	GTCTC	8 cut(s)	175, 185, 522, 541, 656, 1483, 2109, 2484
Alw44I	GTGCAC	1 cut(s)	2173
AlwI	GGATC	9 cut(s)	706, 852, 883, 1399, 1531, 1622, 1710, 1846, 1886
AlwNI	CAGNNNCTG	1 cut(s)	2183
Aor13HI	TCCGGA	1 cut(s)	1495
AoxI	GGCC	7 cut(s)	264, 363, 689, 850, 1050, 1070, 2130
ApaLI	GTGCAC	1 cut(s)	2173
ApoI	RAATTY	5 cut(s)	402, 490, 1433, 1452, 1711
ArsI	GACNNNNNNTTYG	4 cut(s)	153, 185, 266, 298
AsiGI	ACCGGT	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	784
AspLEI	GCGC	2 cut(s)	30, 2440
AspS9I	GGNCC	7 cut(s)	138, 689, 1050, 1217, 1507, 2131, 2468
AsuC2I	CCSGG	2 cut(s)	263, 2414
AsuHPI	GGTGA	4 cut(s)	94, 110, 292, 1145
AsuII	TTCGAA	1 cut(s)	886
AvaII	GGWCC	4 cut(s)	138, 1217, 1507, 2468
AxyI	CCTNAGG	1 cut(s)	2484
BaeGI	GKGCMC	2 cut(s)	2067, 2177
BaeI	ACNNNNGTAYC	2 cut(s)	1077, 1110
BalI	TGGCCA	1 cut(s)	1072
BanI	GGYRCC	1 cut(s)	1564
BbsI	GAAGAC	3 cut(s)	280, 1141, 2527
Bbv12I	GWGCWC	1 cut(s)	2177
BceAI	ACGGC	3 cut(s)	433, 776, 1037
BciT130I	CCWGG	1 cut(s)	687
BclI	TGATCA	1 cut(s)	1444
BcnI	CCSGG	2 cut(s)	263, 2414
BcoDI	GTCTC	8 cut(s)	175, 185, 522, 541, 656, 1483, 2109, 2484
BfaI	CTAG	7 cut(s)	167, 681, 764, 1932, 1982, 2276, 2498
BfmI	CTRYAG	2 cut(s)	602, 2340
BfoI	RGCGCY	1 cut(s)	2441
BfuAI	ACCTGC	1 cut(s)	745
BglII	AGATCT	1 cut(s)	2286
BlpI	GCTNAGC	1 cut(s)	2252
BmcAI	AGTACT	2 cut(s)	903, 2502
Bme1390I	CCNGG	3 cut(s)	263, 687, 2414
Bme18I	GGWCC	4 cut(s)	138, 1217, 1507, 2468
BmgBI	CACGTC	2 cut(s)	2235, 2478
BmgT120I	GGNCC	7 cut(s)	138, 689, 1050, 1217, 1507, 2131, 2468
BmiI	GGNNCC	7 cut(s)	781, 867, 1219, 1566, 1664, 2362, 2470
BmrFI	CCNGG	3 cut(s)	263, 687, 2414
BmsI	GCATC	1 cut(s)	1213
BpiI	GAAGAC	3 cut(s)	280, 1141, 2527
Bpu1102I	GCTNAGC	1 cut(s)	2252
Bpu14I	TTCGAA	1 cut(s)	886
BpuEI	CTTGAG	5 cut(s)	224, 344, 860, 1197, 1454
BpuMI	CCSGG	2 cut(s)	263, 2414
Bsa29I	ATCGAT	1 cut(s)	1119
BsaI	GGTCTC	3 cut(s)	185, 522, 656
BsaJI	CCNNGG	4 cut(s)	154, 686, 1598, 2067
BsaWI	WCCGGW	2 cut(s)	176, 1495
BsaXI	ACNNNNNCTCC	6 cut(s)	73, 103, 260, 290, 519, 549
Bsc4I	CCNNNNNNNGG	4 cut(s)	416, 672, 2199, 2370
Bse118I	RCCGGY	2 cut(s)	176, 254
Bse1I	ACTGG	5 cut(s)	446, 899, 1856, 1972, 2056
Bse21I	CCTNAGG	1 cut(s)	2484
BseAI	TCCGGA	1 cut(s)	1495
BseBI	CCWGG	1 cut(s)	687
BseCI	ATCGAT	1 cut(s)	1119
BseDI	CCNNGG	4 cut(s)	154, 686, 1598, 2067
BseGI	GGATG	3 cut(s)	1492, 2272, 2296
BseLI	CCNNNNNNNGG	4 cut(s)	416, 672, 2199, 2370
BseNI	ACTGG	5 cut(s)	446, 899, 1856, 1972, 2056
BseRI	GAGGAG	5 cut(s)	78, 87, 181, 188, 329
BseSI	GKGCMC	2 cut(s)	2067, 2177
BseX3I	CGGCCG	1 cut(s)	264
BseYI	CCCAGC	2 cut(s)	2369, 2440
BsgI	GTGCAG	2 cut(s)	2142, 2458
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	7 cut(s)	266, 365, 691, 852, 1052, 1072, 2132
BshNI	GGYRCC	1 cut(s)	1564
BshTI	ACCGGT	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	1119
BsiEI	CGRYCG	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	2177
BsiSI	CCGG	7 cut(s)	177, 255, 263, 1496, 1872, 1927, 2413
BslFI	GGGAC	5 cut(s)	92, 1769, 2071, 2341, 2457
BslI	CCNNNNNNNGG	4 cut(s)	416, 672, 2199, 2370
BsmAI	GTCTC	8 cut(s)	175, 185, 522, 541, 656, 1483, 2109, 2484
BsmBI	CGTCTC	1 cut(s)	2484
BsmFI	GGGAC	5 cut(s)	92, 1769, 2071, 2341, 2457
BsmI	GAATGC	2 cut(s)	487, 1884
BsnI	GGCC	7 cut(s)	266, 365, 691, 852, 1052, 1072, 2132
Bso31I	GGTCTC	3 cut(s)	185, 522, 656
Bsp119I	TTCGAA	1 cut(s)	886
Bsp1286I	GDGCHC	2 cut(s)	2067, 2177
Bsp13I	TCCGGA	1 cut(s)	1495
Bsp1407I	TGTACA	2 cut(s)	717, 1647
Bsp1720I	GCTNAGC	1 cut(s)	2252
Bsp19I	CCATGG	1 cut(s)	1598
BspANI	GGCC	7 cut(s)	266, 365, 691, 852, 1052, 1072, 2132
BspDI	ATCGAT	1 cut(s)	1119
BspEI	TCCGGA	1 cut(s)	1495
BspLI	GGNNCC	7 cut(s)	781, 867, 1219, 1566, 1664, 2362, 2470
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	9 cut(s)	706, 852, 883, 1399, 1531, 1622, 1710, 1846, 1886
BspT104I	TTCGAA	1 cut(s)	886
BspT107I	GGYRCC	1 cut(s)	1564
BspTNI	GGTCTC	3 cut(s)	185, 522, 656
BsrBI	CCGCTC	2 cut(s)	225, 321
BsrFI	RCCGGY	2 cut(s)	176, 254
BsrGI	TGTACA	2 cut(s)	717, 1647
BsrI	ACTGG	5 cut(s)	446, 899, 1856, 1972, 2056
BssAI	RCCGGY	2 cut(s)	176, 254
BssECI	CCNNGG	4 cut(s)	154, 686, 1598, 2067
BssT1I	CCWWGG	2 cut(s)	1598, 2067
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	5 cut(s)	106, 893, 1114, 1803, 2062
Bst6I	CTCTTC	3 cut(s)	444, 1606, 2296
BstAPI	GCANNNNNTGC	1 cut(s)	1039
BstAUI	TGTACA	2 cut(s)	717, 1647
BstBI	TTCGAA	1 cut(s)	886
BstC8I	GCNNGC	8 cut(s)	37, 382, 1245, 1314, 2032, 2249, 2392, 2495
BstDSI	CCRYGG	1 cut(s)	1598
BstF5I	GGATG	3 cut(s)	1492, 2272, 2296
BstH2I	RGCGCY	1 cut(s)	2441
BstHHI	GCGC	2 cut(s)	30, 2440
BstMAI	GTCTC	8 cut(s)	175, 185, 522, 541, 656, 1483, 2109, 2484
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	9 cut(s)	36, 77, 216, 377, 598, 1039, 1556, 2253, 2472
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	7 cut(s)	430, 1042, 1197, 1286, 2034, 2165, 2450
BstSCI	CCNGG	3 cut(s)	261, 685, 2412
BstSFI	CTRYAG	2 cut(s)	602, 2340
BstSLI	GKGCMC	2 cut(s)	2067, 2177
BstV2I	GAAGAC	3 cut(s)	280, 1141, 2527
BstX2I	RGATCY	4 cut(s)	1523, 1702, 1838, 2286
BstYI	RGATCY	4 cut(s)	1523, 1702, 1838, 2286
BstZI	CGGCCG	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	1119
Bsu36I	CCTNAGG	1 cut(s)	2484
BsuRI	GGCC	7 cut(s)	266, 365, 691, 852, 1052, 1072, 2132
BsuTUI	ATCGAT	1 cut(s)	1119
BtgI	CCRYGG	1 cut(s)	1598
BtrI	CACGTC	2 cut(s)	2235, 2478
BtsCI	GGATG	3 cut(s)	1492, 2272, 2296
BtsIMutI	CAGTG	3 cut(s)	898, 1119, 1965
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	8 cut(s)	37, 382, 1245, 1314, 2032, 2249, 2392, 2495
CaiI	CAGNNNCTG	1 cut(s)	2183
CfoI	GCGC	2 cut(s)	30, 2440
Cfr10I	RCCGGY	2 cut(s)	176, 254
Cfr13I	GGNCC	7 cut(s)	138, 689, 1050, 1217, 1507, 2131, 2468
ClaI	ATCGAT	1 cut(s)	1119
CseI	GACGC	1 cut(s)	1199
Csp6I	GTAC	7 cut(s)	517, 718, 902, 1094, 1648, 2281, 2501
CspAI	ACCGGT	1 cut(s)	176
CspCI	CAANNNNNGTGG	2 cut(s)	912, 947
CviQI	GTAC	7 cut(s)	517, 718, 902, 1094, 1648, 2281, 2501
DraIII	CACNNNGTG	2 cut(s)	1130, 2336
EaeI	YGGCCR	2 cut(s)	264, 1070
EagI	CGGCCG	1 cut(s)	264
Eam1104I	CTCTTC	3 cut(s)	444, 1606, 2296
EarI	CTCTTC	3 cut(s)	444, 1606, 2296
EciI	GGCGGA	5 cut(s)	81, 130, 364, 396, 2481
EclXI	CGGCCG	1 cut(s)	264
Eco130I	CCWWGG	2 cut(s)	1598, 2067
Eco147I	AGGCCT	1 cut(s)	365
Eco31I	GGTCTC	3 cut(s)	185, 522, 656
Eco47I	GGWCC	4 cut(s)	138, 1217, 1507, 2468
Eco52I	CGGCCG	1 cut(s)	264
Eco81I	CCTNAGG	1 cut(s)	2484
EcoO109I	RGGNCCY	3 cut(s)	689, 1217, 2131
EcoRI	GAATTC	2 cut(s)	490, 1452
EcoRII	CCWGG	1 cut(s)	685
EcoT14I	CCWWGG	2 cut(s)	1598, 2067
EcoT22I	ATGCAT	1 cut(s)	1884
ErhI	CCWWGG	2 cut(s)	1598, 2067
Esp3I	CGTCTC	1 cut(s)	2484
FaqI	GGGAC	5 cut(s)	92, 1769, 2071, 2341, 2457
FauI	CCCGC	5 cut(s)	40, 44, 224, 323, 1899
FauNDI	CATATG	2 cut(s)	134, 1884
FbaI	TGATCA	1 cut(s)	1444
FokI	GGATG	3 cut(s)	1479, 2279, 2283
FspBI	CTAG	7 cut(s)	167, 681, 764, 1932, 1982, 2276, 2498
GlaI	GCGC	2 cut(s)	29, 2439
GsaI	CCCAGC	2 cut(s)	2373, 2444
HaeII	RGCGCY	1 cut(s)	2441
HaeIII	GGCC	7 cut(s)	266, 365, 691, 852, 1052, 1072, 2132
HapII	CCGG	7 cut(s)	177, 255, 263, 1496, 1872, 1927, 2413
HgaI	GACGC	1 cut(s)	1199
HhaI	GCGC	2 cut(s)	30, 2440
Hin6I	GCGC	2 cut(s)	28, 2438
HinP1I	GCGC	2 cut(s)	28, 2438
HindIII	AAGCTT	1 cut(s)	2245
HpaII	CCGG	7 cut(s)	177, 255, 263, 1496, 1872, 1927, 2413
HphI	GGTGA	4 cut(s)	94, 110, 292, 1145
Hpy166II	GTNNAC	6 cut(s)	734, 1209, 1965, 2175, 2281, 2428
Hpy188III	TCNNGA	9 cut(s)	696, 777, 839, 1024, 1295, 1368, 1496, 2021, 2038
Hpy8I	GTNNAC	6 cut(s)	734, 1209, 1965, 2175, 2281, 2428
HpyAV	CCTTC	7 cut(s)	32, 702, 1094, 1337, 1729, 2144, 2351
HpyCH4III	ACNGT	5 cut(s)	106, 893, 1114, 1803, 2062
HpyCH4IV	ACGT	3 cut(s)	354, 2234, 2477
HpyF10VI	GCNNNNNNNGC	9 cut(s)	36, 77, 216, 377, 598, 1039, 1556, 2253, 2472
HpySE526I	ACGT	3 cut(s)	354, 2234, 2477
HspAI	GCGC	2 cut(s)	28, 2438
Kpn2I	TCCGGA	1 cut(s)	1495
Ksp22I	TGATCA	1 cut(s)	1444
LmnI	GCTCC	6 cut(s)	389, 490, 496, 1662, 2366, 2415
LweI	GCATC	1 cut(s)	1213
MaeI	CTAG	7 cut(s)	167, 681, 764, 1932, 1982, 2276, 2498
MaeII	ACGT	3 cut(s)	354, 2234, 2477
MaeIII	GTNAC	3 cut(s)	710, 1108, 2379
MbiI	CCGCTC	2 cut(s)	225, 321
MfeI	CAATTG	1 cut(s)	1401
MflI	RGATCY	4 cut(s)	1523, 1702, 1838, 2286
MhlI	GDGCHC	2 cut(s)	2067, 2177
MlsI	TGGCCA	1 cut(s)	1072
MluNI	TGGCCA	1 cut(s)	1072
MlyI	GAGTC	8 cut(s)	263, 269, 575, 1204, 2000, 2096, 2111, 2517
MmeI	TCCRAC	5 cut(s)	297, 730, 1330, 1615, 1665
Mox20I	TGGCCA	1 cut(s)	1072
Mph1103I	ATGCAT	1 cut(s)	1884
MroI	TCCGGA	1 cut(s)	1495
MroXI	GAANNNNTTC	1 cut(s)	784
MscI	TGGCCA	1 cut(s)	1072
MseI	TTAA	5 cut(s)	1707, 1832, 2205, 2508, 2554
Msp20I	TGGCCA	1 cut(s)	1072
MspA1I	CMGCKG	5 cut(s)	668, 1268, 1484, 1906, 2183
MspI	CCGG	7 cut(s)	177, 255, 263, 1496, 1872, 1927, 2413
MspR9I	CCNGG	3 cut(s)	263, 687, 2414
MunI	CAATTG	1 cut(s)	1401
Mva1269I	GAATGC	2 cut(s)	487, 1884
MvaI	CCWGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	9 cut(s)	36, 77, 216, 377, 598, 1039, 1556, 2253, 2472
NciI	CCSGG	2 cut(s)	263, 2414
NcoI	CCATGG	1 cut(s)	1598
NdeI	CATATG	2 cut(s)	134, 1884
NlaIV	GGNNCC	7 cut(s)	781, 867, 1219, 1566, 1664, 2362, 2470
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	710, 2379
NsiI	ATGCAT	1 cut(s)	1884
NspI	RCATGY	7 cut(s)	430, 1042, 1197, 1286, 2034, 2165, 2450
NspV	TTCGAA	1 cut(s)	886
PaeI	GCATGC	1 cut(s)	2034
PceI	AGGCCT	1 cut(s)	365
PciI	ACATGT	1 cut(s)	2446
PctI	GAATGC	2 cut(s)	487, 1884
PdmI	GAANNNNTTC	1 cut(s)	784
PfeI	GAWTC	8 cut(s)	644, 980, 1020, 1121, 1177, 1688, 1820, 2210
PflFI	GACNNNGTC	1 cut(s)	533
PflMI	CCANNNNNTGG	1 cut(s)	2199
PfoI	TCCNGGA	1 cut(s)	2412
PinAI	ACCGGT	1 cut(s)	176
PleI	GAGTC	8 cut(s)	263, 269, 575, 1204, 1999, 2096, 2111, 2517
PpsI	GAGTC	8 cut(s)	263, 269, 575, 1204, 1999, 2096, 2111, 2517
PpuMI	RGGWCCY	1 cut(s)	1217
PscI	ACATGT	1 cut(s)	2446
Psp5II	RGGWCCY	1 cut(s)	1217
Psp6I	CCWGG	1 cut(s)	685
PspFI	CCCAGC	2 cut(s)	2369, 2440
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	7 cut(s)	781, 867, 1219, 1566, 1664, 2362, 2470
PspPI	GGNCC	7 cut(s)	138, 689, 1050, 1217, 1507, 2131, 2468
PspPPI	RGGWCCY	1 cut(s)	1217
PsrI	GAACNNNNNNTAC	4 cut(s)	849, 881, 1845, 1877
PstI	CTGCAG	1 cut(s)	606
PstNI	CAGNNNCTG	1 cut(s)	2183
PsuI	RGATCY	4 cut(s)	1523, 1702, 1838, 2286
PsyI	GACNNNGTC	1 cut(s)	533
PvuII	CAGCTG	3 cut(s)	1268, 1484, 2183
RsaI	GTAC	7 cut(s)	518, 719, 903, 1095, 1649, 2282, 2502
RsaNI	GTAC	7 cut(s)	517, 718, 902, 1094, 1648, 2281, 2501
SaqAI	TTAA	5 cut(s)	1707, 1832, 2205, 2508, 2554
Sau96I	GGNCC	7 cut(s)	138, 689, 1050, 1217, 1507, 2131, 2468
ScaI	AGTACT	2 cut(s)	903, 2502
SchI	GAGTC	8 cut(s)	263, 269, 575, 1204, 2000, 2096, 2111, 2517
ScrFI	CCNGG	3 cut(s)	263, 687, 2414
SduI	GDGCHC	2 cut(s)	2067, 2177
SfaNI	GCATC	1 cut(s)	1213
SfcI	CTRYAG	2 cut(s)	602, 2340
SfuI	TTCGAA	1 cut(s)	886
SinI	GGWCC	4 cut(s)	138, 1217, 1507, 2468
SmlI	CTYRAG	5 cut(s)	239, 359, 839, 1212, 1469
SmoI	CTYRAG	5 cut(s)	239, 359, 839, 1212, 1469
SphI	GCATGC	1 cut(s)	2034
SseBI	AGGCCT	1 cut(s)	365
SspI	AATATT	1 cut(s)	1939
SspMI	CTAG	7 cut(s)	167, 681, 764, 1932, 1982, 2276, 2498
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	3 cut(s)	261, 685, 2412
StyI	CCWWGG	2 cut(s)	1598, 2067
TaaI	ACNGT	5 cut(s)	106, 893, 1114, 1803, 2062
TaiI	ACGT	3 cut(s)	357, 2237, 2480
TaqI	TCGA	8 cut(s)	584, 886, 1119, 1369, 1394, 1743, 2350, 2526
TatI	WGTACW	4 cut(s)	717, 901, 1647, 2500
TauI	GCSGC	8 cut(s)	188, 222, 225, 321, 380, 554, 916, 1981
TfiI	GAWTC	8 cut(s)	644, 980, 1020, 1121, 1177, 1688, 1820, 2210
Tru1I	TTAA	5 cut(s)	1707, 1832, 2205, 2508, 2554
Tru9I	TTAA	5 cut(s)	1707, 1832, 2205, 2508, 2554
TscAI	CASTG	3 cut(s)	898, 1119, 1972
TseFI	GTSAC	2 cut(s)	710, 2379
Tsp45I	GTSAC	2 cut(s)	710, 2379
TspDTI	ATGAA	2 cut(s)	810, 2283
TspGWI	ACGGA	3 cut(s)	719, 858, 1418
TspRI	CASTG	3 cut(s)	898, 1119, 1972
Tth111I	GACNNNGTC	1 cut(s)	533
Van91I	CCANNNNNTGG	1 cut(s)	2199
VneI	GTGCAC	1 cut(s)	2173
VpaK11BI	GGWCC	4 cut(s)	138, 1217, 1507, 2468
XapI	RAATTY	5 cut(s)	402, 490, 1433, 1452, 1711
XceI	RCATGY	7 cut(s)	430, 1042, 1197, 1286, 2034, 2165, 2450
XmnI	GAANNNNTTC	1 cut(s)	784
XspI	CTAG	7 cut(s)	167, 681, 764, 1932, 1982, 2276, 2498
ZrmI	AGTACT	2 cut(s)	903, 2502
Zsp2I	ATGCAT	1 cut(s)	1884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.