Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0012479

Physical Location & Seq

Genomic Coordinates Reverse (-)

25319276 .. 25326815

Gene Structure 7540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG117700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2136 bp

ATGCTCCGCCTCTCCTCTCTCCTTCTCCGCCACAACCGCCACCGCTGCCACCTCACCAAACCCTTCTCCACCACTACTAGTCCTCTTCCTCTCACCGTCCCTCTCTCTCACCCCATCTACCTCATATGGTCCTCCAACACCTCCCTCGGCAAAACCCTAGTCTCCACCGGCCTCGCCGCCTCCTCTCTCCGCTCCTACCGCCGCCGCCTCTCCTTCCTCTACCTCAAGCCCGTCCAGACCGGCTTCCCCGCCGACTCCGACTCCCGCTTCGTCTTCTCCAAACTCACCTCCCTCGCCCTCCGCCACCGCCGCCTCTCCCCTCATTTCTCTCTCCTCGCCTCCAATCACCTCCTCAAGGCCTCCGCCTCCGCCGCAGCGTCCCTATTAGCCCCCGGAGCTCCCCGAATTTATGATAATGGCATGTGCCATTTGGATTGGTCTGAGGAGAGGAGGGTTGCTGGGGAGAATTCCGGGAATGATGAGCCTTCAAAGCTTGTTTGTAAGACAATGTACGCTTGGGGCGACGCCGTTTCGCCACATTTGGCTGCCGAGAGGGAAAATGGGACTATTGAGGATTCGGCTTTGCTCGAAACGGTGCAGAGGTGTTTGGAAATTGGGGTTGGAAAAGAGAATATGGATCATTTTTCTGTGGTTGAGACGGCTGGCGGGGTTGCCAGTCCAGGGCCTTCTGGTTCACTTCAATGTGACCTGTACAGGCCTTTTCGTTTGCCTGCAATTCTTGTTGGAGATGGGCGATTAGGTGGGATTTCCGGAACCATTTCAGCTTATGAAACATTGAAACTCCGGGGTTATGATGTTGTCGCGGTTGTTCTGGAGGATCATGGCCTTGTAAATGAGGTGCCTTTAGCATCATATCTTAGAAACAGTGTTCCAGTGCTTGTTCTGCCACCTGTTCCACAAGACTTGTCAGATGACCTTATGGAATGGTACGATGATGCTCATAATGTTTTTGATTCGCTCATGGAGATAATGCTATCAGCTTACTCTGAGAGAGTCAAGAGATTGCGTGACATGCCAAAGAGGGCAGTAGATGTTTTTTGGTGGCCATTTACTCAGCACACATTTGTACCAGAAGGAAATGTTACGGTGATTGATTCACGCTGTGGTGAGAACTTTGCAGTCTTCAAGAATGATGATGCCATAACTGAACAGTTTGACGCTTGTGCAAGTTGGTGGACTCAAGGACCTGATGCTACTTTACAGACTGAGCTTGCCAGGGATATCGGTTATGCAGCTGCAAGATTTGGGCATGTAATGTTTCCTGAGAATGTTTACGAGCCAGCCTTAGAATGTGCAGAACTTTTGCTTGAAGGTGTTGGAAAAGATTGGGCTTCTCGAACATACTTTTCGGACAATGGATCTACAGCAATTGAGATTGCACTGAAGATGGCATTCCGTAAATTCTCTCATGATCATGGACTTCTTTTGGAATCTCTGAAGGACAACTCAACTGAGAGATGTCCAGAGCTTGTGGTCCTAGCTCTTAACGGATCTTATCATGGTGATACTTTGGGTGCTATGGAAGCGCAAGCACCGTCATGTTATACCGGCTTCCTACAACAACCTTGGTATAAAGGAAGAGGTTTTTTTCTTGATCCTCCTACGGTCTTTTTGAGCAAGAATATGTGGAACCTTTCCCTACCTGAAGGATTGCATTCTCCGGATTTAAATGTTAAGAATATGACCTTTTGTTCCCGTGATGATATACTAAACAAGAGCAGGGACAATTCAGATCTTGCTGTAATTTATTCATCATTCATATCACATCAGTTATCAAAGTTTCCTGAATCGAAAGGGCTAATTGGAGCATTGATTATTGAACCAGTTATACATGGTGCTGGAGGAATGCATATGGTCGATCCACTTTTCCAACGGGTTCTTGTGAATGAGTGCCGGAATAAAAACATTCCCATTATCTTTGATGAGGTCTTCACTGGTTTCTGGCGCCTGGGAACAGAGTCTGCTGCAGAACTTCTACACTGTTTTCCAGATATAGCCTGTTTTGGGAAGCTGATGACAGGTGGGACTATACCCTTGTCTGCTACATTGGCTACGAATGCCGTATTTGACTCATTTATTGGAGACTCAAAGGTAATATATATTATGGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004015 GO:0004141 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006768 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009102 GO:0009108 GO:0009110 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0016874 GO:0016879 GO:0016882 GO:0017144 GO:0018130 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

AAA_26 Aminotran_3

Protein Analysis

711

Amino Acids

78.57

Weight (kDa)

5.72

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_26	PF13500	171 - 279	9.5e-09	AAA domain
Aminotran_3	PF00202	418 - 519	7.2e-09	Aminotransferase class-III
Aminotran_3	PF00202	603 - 699	3e-20	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57590
fragaria_vesca	FvH4_4g09130 FvH4_4g09130
malus_domestica	MD13G1267300.v1.1
prunus_persica	Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1
pyrus_communis	pycom13g22810
rosa_chinensis	RchiOBHm_Chr4g0403051
rosa_laevigata	RLG00000009028
rosa_multiflora	Rmu_co8501967.1_g000001 Rmu_sc0001023.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347740
rosa_rugosa	Rorug04G0040400
rosa_samantha	Rh4AG117700 Rh4BG110200 Rh4CG124500 Rh4DG109600
rosa_wichuraiana	Rw4G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	859, 1965
AccBSI	CCGCTC	1 cut(s)	192
AccII	CGCG	1 cut(s)	824
AccIII	TCCGGA	2 cut(s)	770, 1681
AclWI	GGATC	6 cut(s)	645, 846, 1387, 1519, 1610, 1874
AcoI	YGGCCR	1 cut(s)	1064
AcsI	RAATTY	3 cut(s)	405, 466, 1421
AcuI	CTGAAG	3 cut(s)	1424, 1478, 1686
AcyI	GRCGYC	2 cut(s)	525, 1966
AdeI	CACNNNGTG	1 cut(s)	1124
AfaI	GTAC	4 cut(s)	512, 713, 950, 1089
AfiI	CCNNNNNNNGG	3 cut(s)	355, 681, 2025
AgsI	TTSAA	6 cut(s)	489, 701, 799, 1147, 1331, 1841
AhlI	ACTAGT	1 cut(s)	77
AjnI	CCWGG	3 cut(s)	679, 1235, 1968
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AluBI	AGCT	9 cut(s)	398, 493, 785, 1001, 1231, 1256, 1489, 1502, 2032
AluI	AGCT	9 cut(s)	398, 493, 785, 1001, 1231, 1256, 1489, 1502, 2032
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	3 cut(s)	166, 650, 2097
AlwI	GGATC	6 cut(s)	645, 846, 1387, 1519, 1610, 1874
AlwNI	CAGNNNCTG	1 cut(s)	1982
Aor13HI	TCCGGA	2 cut(s)	770, 1681
AoxI	GGCC	6 cut(s)	169, 357, 683, 716, 844, 1064
ApeKI	GCWGC	6 cut(s)	45, 374, 545, 1253, 1256, 1985
ApoI	RAATTY	3 cut(s)	405, 466, 1421
ArsI	GACNNNNNNTTYG	4 cut(s)	144, 176, 251, 283
Asp700I	GAANNNNTTC	1 cut(s)	778
AspLEI	GCGC	2 cut(s)	1549, 1968
AspS9I	GGNCC	4 cut(s)	129, 683, 1205, 1495
AsuC2I	CCSGG	3 cut(s)	393, 472, 806
AsuHPI	GGTGA	8 cut(s)	46, 85, 101, 277, 338, 1120, 1139, 1535
AvaII	GGWCC	3 cut(s)	129, 1205, 1495
BaeI	ACNNNNGTAYC	2 cut(s)	1071, 1104
BalI	TGGCCA	1 cut(s)	1066
BanI	GGYRCC	2 cut(s)	859, 1965
BanII	GRGCYC	1 cut(s)	400
BbsI	GAAGAC	3 cut(s)	265, 1135, 1942
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	6 cut(s)	32, 386, 532, 1243, 1265, 1972
BccI	CCATC	3 cut(s)	122, 743, 1402
BceAI	ACGGC	3 cut(s)	512, 675, 2066
BciT130I	CCWGG	3 cut(s)	681, 1237, 1970
BclI	TGATCA	1 cut(s)	1432
BcnI	CCSGG	3 cut(s)	393, 472, 806
BcoDI	GTCTC	3 cut(s)	166, 650, 2097
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	3 cut(s)	78, 158, 1499
BfmI	CTRYAG	2 cut(s)	1383, 1986
BfoI	RGCGCY	1 cut(s)	1969
BglII	AGATCT	1 cut(s)	1753
Bme1390I	CCNGG	6 cut(s)	393, 472, 681, 806, 1237, 1970
Bme18I	GGWCC	3 cut(s)	129, 1205, 1495
BmgT120I	GGNCC	4 cut(s)	129, 683, 1205, 1495
BmiI	GGNNCC	4 cut(s)	775, 861, 1652, 1967
BmrFI	CCNGG	6 cut(s)	393, 472, 681, 806, 1237, 1970
BmsI	GCATC	4 cut(s)	878, 946, 1147, 1201
BpiI	GAAGAC	3 cut(s)	265, 1135, 1942
BpmI	CTGGAG	2 cut(s)	854, 1881
BpuEI	CTTGAG	3 cut(s)	209, 338, 1185
BpuMI	CCSGG	3 cut(s)	393, 472, 806
BsaHI	GRCGYC	2 cut(s)	525, 1966
BsaJI	CCNNGG	7 cut(s)	145, 391, 680, 805, 1236, 1586, 1969
BsaWI	WCCGGW	2 cut(s)	770, 1681
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 681, 2025
Bse118I	RCCGGY	3 cut(s)	167, 239, 1568
Bse1I	ACTGG	4 cut(s)	675, 893, 1844, 1960
BseAI	TCCGGA	2 cut(s)	770, 1681
BseBI	CCWGG	3 cut(s)	681, 1237, 1970
BseDI	CCNNGG	7 cut(s)	145, 391, 680, 805, 1236, 1586, 1969
BseLI	CCNNNNNNNGG	3 cut(s)	355, 681, 2025
BseMII	CTCAG	6 cut(s)	432, 999, 1088, 1218, 1275, 1464
BseNI	ACTGG	4 cut(s)	675, 893, 1844, 1960
BseRI	GAGGAG	6 cut(s)	4, 172, 323, 341, 458, 463
BseXI	GCAGC	6 cut(s)	32, 386, 532, 1243, 1265, 1972
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	2 cut(s)	617, 1335
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	6 cut(s)	171, 359, 685, 718, 846, 1066
BshNI	GGYRCC	2 cut(s)	859, 1965
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	9 cut(s)	168, 240, 393, 471, 771, 805, 1569, 1682, 1915
BslFI	GGGAC	5 cut(s)	83, 364, 577, 1757, 2059
BslI	CCNNNNNNNGG	3 cut(s)	355, 681, 2025
BsmAI	GTCTC	3 cut(s)	166, 650, 2097
BsmBI	CGTCTC	1 cut(s)	650
BsmFI	GGGAC	5 cut(s)	83, 364, 577, 1757, 2059
BsmI	GAATGC	4 cut(s)	1412, 1675, 1872, 2083
BsnI	GGCC	6 cut(s)	171, 359, 685, 718, 846, 1066
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp13I	TCCGGA	2 cut(s)	770, 1681
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	8 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879
BspANI	GGCC	6 cut(s)	171, 359, 685, 718, 846, 1066
BspCNI	CTCAG	6 cut(s)	433, 1000, 1087, 1219, 1276, 1465
BspEI	TCCGGA	2 cut(s)	770, 1681
BspFNI	CGCG	1 cut(s)	824
BspHI	TCATGA	1 cut(s)	1429
BspLI	GGNNCC	4 cut(s)	775, 861, 1652, 1967
BspMAI	CTGCAG	1 cut(s)	1990
BspPI	GGATC	6 cut(s)	645, 846, 1387, 1519, 1610, 1874
BspT107I	GGYRCC	2 cut(s)	859, 1965
BsrBI	CCGCTC	1 cut(s)	192
BsrFI	RCCGGY	3 cut(s)	167, 239, 1568
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	4 cut(s)	675, 893, 1844, 1960
BssAI	RCCGGY	3 cut(s)	167, 239, 1568
BssECI	CCNNGG	7 cut(s)	145, 391, 680, 805, 1236, 1586, 1969
BssMI	GATC	8 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879
BssNI	GRCGYC	2 cut(s)	525, 1966
BssT1I	CCWWGG	1 cut(s)	1586
Bst2UI	CCWGG	3 cut(s)	681, 1237, 1970
Bst4CI	ACNGT	8 cut(s)	97, 595, 887, 1108, 1173, 1557, 1627, 2003
Bst6I	CTCTTC	2 cut(s)	90, 1594
BstACI	GRCGYC	2 cut(s)	525, 1966
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	5 cut(s)	664, 732, 1233, 1302, 1551
BstDEI	CTNAG	8 cut(s)	441, 878, 1008, 1074, 1227, 1284, 1306, 1473
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstFNI	CGCG	1 cut(s)	824
BstH2I	RGCGCY	1 cut(s)	1969
BstHHI	GCGC	2 cut(s)	1549, 1968
BstKTI	GATC	8 cut(s)	640, 841, 1382, 1435, 1514, 1618, 1756, 1882
BstMAI	GTCTC	3 cut(s)	166, 650, 2097
BstMBI	GATC	8 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879
BstNI	CCWGG	3 cut(s)	681, 1237, 1970
BstNSI	RCATGY	3 cut(s)	424, 1036, 1274
BstSCI	CCNGG	6 cut(s)	391, 470, 679, 804, 1235, 1968
BstSFI	CTRYAG	2 cut(s)	1383, 1986
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	6 cut(s)	32, 386, 532, 1243, 1265, 1972
BstV2I	GAAGAC	3 cut(s)	265, 1135, 1942
BstX2I	RGATCY	3 cut(s)	1379, 1511, 1753
BstYI	RGATCY	3 cut(s)	1379, 1511, 1753
BsuRI	GGCC	6 cut(s)	171, 359, 685, 718, 846, 1066
BtsIMutI	CAGTG	5 cut(s)	892, 900, 1400, 1953, 1999
Cac8I	GCNNGC	5 cut(s)	664, 732, 1233, 1302, 1551
CaiI	CAGNNNCTG	1 cut(s)	1982
CciI	TCATGA	1 cut(s)	1429
CfoI	GCGC	2 cut(s)	1549, 1968
Cfr10I	RCCGGY	3 cut(s)	167, 239, 1568
Cfr13I	GGNCC	4 cut(s)	129, 683, 1205, 1495
CseI	GACGC	3 cut(s)	366, 533, 1187
Csp6I	GTAC	4 cut(s)	511, 712, 949, 1088
CspCI	CAANNNNNGTGG	2 cut(s)	906, 941
CviQI	GTAC	4 cut(s)	511, 712, 949, 1088
DdeI	CTNAG	8 cut(s)	441, 878, 1008, 1074, 1227, 1284, 1306, 1473
DinI	GGCGCC	1 cut(s)	1967
DpnI	GATC	8 cut(s)	639, 840, 1381, 1434, 1513, 1617, 1755, 1881
DpnII	GATC	8 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879
DraI	TTTAAA	1 cut(s)	1689
DraIII	CACNNNGTG	1 cut(s)	1124
EaeI	YGGCCR	1 cut(s)	1064
Eam1104I	CTCTTC	2 cut(s)	90, 1594
EarI	CTCTTC	2 cut(s)	90, 1594
EciI	GGCGGA	4 cut(s)	17, 290, 352, 358
Ecl136II	GAGCTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	1586
Eco147I	AGGCCT	2 cut(s)	359, 718
Eco24I	GRGCYC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	1243
Eco47I	GGWCC	3 cut(s)	129, 1205, 1495
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	3 cut(s)	1424, 1478, 1686
EcoICRI	GAGCTC	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	2 cut(s)	683, 1205
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	3 cut(s)	679, 1235, 1968
EcoRV	GATATC	1 cut(s)	1243
EcoT14I	CCWWGG	1 cut(s)	1586
EcoT22I	ATGCAT	1 cut(s)	1872
EcoT38I	GRGCYC	1 cut(s)	400
EgeI	GGCGCC	1 cut(s)	1967
EheI	GGCGCC	1 cut(s)	1967
ErhI	CCWWGG	1 cut(s)	1586
Esp3I	CGTCTC	1 cut(s)	650
FaqI	GGGAC	5 cut(s)	83, 364, 577, 1757, 2059
FauI	CCCGC	3 cut(s)	256, 272, 659
FauNDI	CATATG	2 cut(s)	125, 1872
FbaI	TGATCA	1 cut(s)	1432
FriOI	GRGCYC	1 cut(s)	400
FspBI	CTAG	3 cut(s)	78, 158, 1499
GlaI	GCGC	2 cut(s)	1548, 1967
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	2 cut(s)	854, 1881
HaeII	RGCGCY	1 cut(s)	1969
HaeIII	GGCC	6 cut(s)	171, 359, 685, 718, 846, 1066
HapII	CCGG	9 cut(s)	168, 240, 393, 471, 771, 805, 1569, 1682, 1915
HgaI	GACGC	3 cut(s)	366, 533, 1187
HhaI	GCGC	2 cut(s)	1549, 1968
Hin1I	GRCGYC	2 cut(s)	525, 1966
Hin6I	GCGC	2 cut(s)	1547, 1966
HinP1I	GCGC	2 cut(s)	1547, 1966
HindIII	AAGCTT	1 cut(s)	491
HpaII	CCGG	9 cut(s)	168, 240, 393, 471, 771, 805, 1569, 1682, 1915
HphI	GGTGA	8 cut(s)	46, 85, 101, 277, 338, 1120, 1139, 1535
Hpy166II	GTNNAC	3 cut(s)	695, 1197, 1294
Hpy188I	TCNGA	7 cut(s)	259, 442, 931, 1009, 1372, 1458, 1753
Hpy8I	GTNNAC	3 cut(s)	695, 1197, 1294
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	9 cut(s)	32, 73, 223, 495, 696, 1088, 1325, 1453, 1661
HpyCH4III	ACNGT	8 cut(s)	97, 595, 887, 1108, 1173, 1557, 1627, 2003
HpyF3I	CTNAG	8 cut(s)	441, 878, 1008, 1074, 1227, 1284, 1306, 1473
Hsp92I	GRCGYC	2 cut(s)	525, 1966
HspAI	GCGC	2 cut(s)	1547, 1966
KasI	GGCGCC	1 cut(s)	1965
Kpn2I	TCCGGA	2 cut(s)	770, 1681
Ksp22I	TGATCA	1 cut(s)	1432
Kzo9I	GATC	8 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879
LmnI	GCTCC	5 cut(s)	9, 197, 395, 403, 1826
Lsp1109I	GCAGC	6 cut(s)	32, 386, 532, 1243, 1265, 1972
LweI	GCATC	4 cut(s)	878, 946, 1147, 1201
MaeI	CTAG	3 cut(s)	78, 158, 1499
MaeIII	GTNAC	3 cut(s)	704, 1028, 1102
MalI	GATC	8 cut(s)	639, 840, 1381, 1434, 1513, 1617, 1755, 1881
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	8 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879
MboII	GAAGA	6 cut(s)	77, 265, 1135, 1417, 1611, 1942
MfeI	CAATTG	1 cut(s)	1389
MflI	RGATCY	3 cut(s)	1379, 1511, 1753
MhlI	GDGCHC	1 cut(s)	400
MlsI	TGGCCA	1 cut(s)	1066
MluCI	AATT	9 cut(s)	405, 466, 612, 735, 1389, 1421, 1747, 1764, 1821
MluNI	TGGCCA	1 cut(s)	1066
Mly113I	GGCGCC	1 cut(s)	1966
MlyI	GAGTC	7 cut(s)	248, 254, 1023, 1192, 1988, 2084, 2099
MmeI	TCCRAC	6 cut(s)	159, 282, 601, 724, 1318, 1915
Mox20I	TGGCCA	1 cut(s)	1066
Mph1103I	ATGCAT	1 cut(s)	1872
MroI	TCCGGA	2 cut(s)	770, 1681
MroXI	GAANNNNTTC	1 cut(s)	778
MscI	TGGCCA	1 cut(s)	1066
MseI	TTAA	3 cut(s)	1506, 1688, 1695
MslI	CAYNNNNRTG	3 cut(s)	700, 1434, 1558
Msp20I	TGGCCA	1 cut(s)	1066
MspA1I	CMGCKG	2 cut(s)	45, 1256
MspI	CCGG	9 cut(s)	168, 240, 393, 471, 771, 805, 1569, 1682, 1915
MspR9I	CCNGG	6 cut(s)	393, 472, 681, 806, 1237, 1970
MunI	CAATTG	1 cut(s)	1389
Mva1269I	GAATGC	4 cut(s)	1412, 1675, 1872, 2083
MvaI	CCWGG	3 cut(s)	681, 1237, 1970
MvnI	CGCG	1 cut(s)	824
NarI	GGCGCC	1 cut(s)	1966
NciI	CCSGG	3 cut(s)	393, 472, 806
NdeI	CATATG	2 cut(s)	125, 1872
NdeII	GATC	8 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879
NlaIV	GGNNCC	4 cut(s)	775, 861, 1652, 1967
NmeAIII	GCCGAG	2 cut(s)	126, 574
NmuCI	GTSAC	2 cut(s)	704, 1028
NsiI	ATGCAT	1 cut(s)	1872
NspI	RCATGY	3 cut(s)	424, 1036, 1274
PagI	TCATGA	1 cut(s)	1429
PceI	AGGCCT	2 cut(s)	359, 718
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PctI	GAATGC	4 cut(s)	1412, 1675, 1872, 2083
PdmI	GAANNNNTTC	1 cut(s)	778
PfeI	GAWTC	5 cut(s)	575, 974, 1115, 1451, 1808
PfoI	TCCNGGA	1 cut(s)	470
PleI	GAGTC	7 cut(s)	248, 254, 1022, 1192, 1987, 2084, 2099
PluTI	GGCGCC	1 cut(s)	1969
PpsI	GAGTC	7 cut(s)	248, 254, 1022, 1192, 1987, 2084, 2099
PpuMI	RGGWCCY	1 cut(s)	1205
Psp124BI	GAGCTC	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	1205
Psp6I	CCWGG	3 cut(s)	679, 1235, 1968
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	3 cut(s)	679, 1235, 1968
PspN4I	GGNNCC	4 cut(s)	775, 861, 1652, 1967
PspPI	GGNCC	4 cut(s)	129, 683, 1205, 1495
PspPPI	RGGWCCY	1 cut(s)	1205
PsrI	GAACNNNNNNTAC	2 cut(s)	1833, 1865
PstI	CTGCAG	1 cut(s)	1990
PstNI	CAGNNNCTG	1 cut(s)	1982
PsuI	RGATCY	3 cut(s)	1379, 1511, 1753
PvuII	CAGCTG	1 cut(s)	1256
RsaI	GTAC	4 cut(s)	512, 713, 950, 1089
RsaNI	GTAC	4 cut(s)	511, 712, 949, 1088
RseI	CAYNNNNRTG	3 cut(s)	700, 1434, 1558
SacI	GAGCTC	1 cut(s)	400
SaqAI	TTAA	3 cut(s)	1506, 1688, 1695
Sau3AI	GATC	8 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879
Sau96I	GGNCC	4 cut(s)	129, 683, 1205, 1495
SchI	GAGTC	7 cut(s)	248, 254, 1023, 1192, 1988, 2084, 2099
ScrFI	CCNGG	6 cut(s)	393, 472, 681, 806, 1237, 1970
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	4 cut(s)	878, 946, 1147, 1201
SfcI	CTRYAG	2 cut(s)	1383, 1986
SfoI	GGCGCC	1 cut(s)	1967
SinI	GGWCC	3 cut(s)	129, 1205, 1495
SmiI	ATTTAAAT	1 cut(s)	1689
SmiMI	CAYNNNNRTG	3 cut(s)	700, 1434, 1558
SmlI	CTYRAG	3 cut(s)	224, 353, 1200
SmoI	CTYRAG	3 cut(s)	224, 353, 1200
SpeI	ACTAGT	1 cut(s)	77
Sse9I	AATT	9 cut(s)	405, 466, 612, 735, 1389, 1421, 1747, 1764, 1821
SseBI	AGGCCT	2 cut(s)	359, 718
SspDI	GGCGCC	1 cut(s)	1965
SspMI	CTAG	3 cut(s)	78, 158, 1499
SstI	GAGCTC	1 cut(s)	400
StuI	AGGCCT	2 cut(s)	359, 718
StyD4I	CCNGG	6 cut(s)	391, 470, 679, 804, 1235, 1968
StyI	CCWWGG	1 cut(s)	1586
SwaI	ATTTAAAT	1 cut(s)	1689
TaaI	ACNGT	8 cut(s)	97, 595, 887, 1108, 1173, 1557, 1627, 2003
TaqI	TCGA	4 cut(s)	588, 1357, 1811, 1878
TasI	AATT	9 cut(s)	405, 466, 612, 735, 1389, 1421, 1747, 1764, 1821
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	5 cut(s)	179, 204, 207, 312, 374
TfiI	GAWTC	5 cut(s)	575, 974, 1115, 1451, 1808
Tru1I	TTAA	3 cut(s)	1506, 1688, 1695
Tru9I	TTAA	3 cut(s)	1506, 1688, 1695
TscAI	CASTG	5 cut(s)	892, 900, 1407, 1960, 2006
TseFI	GTSAC	2 cut(s)	704, 1028
TseI	GCWGC	6 cut(s)	45, 374, 545, 1253, 1256, 1985
Tsp45I	GTSAC	2 cut(s)	704, 1028
TspDTI	ATGAA	3 cut(s)	804, 1761, 1768
TspGWI	ACGGA	2 cut(s)	1406, 1524
TspRI	CASTG	5 cut(s)	892, 900, 1407, 1960, 2006
VpaK11BI	GGWCC	3 cut(s)	129, 1205, 1495
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	3 cut(s)	405, 466, 1421
XceI	RCATGY	3 cut(s)	424, 1036, 1274
XmnI	GAANNNNTTC	1 cut(s)	778
XspI	CTAG	3 cut(s)	78, 158, 1499
Zsp2I	ATGCAT	1 cut(s)	1872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.