Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8501967.1

Orthogroup ID

OG0012479

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2804

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8501967.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 950 bp

aaggaagaggtttttttcttgatcctcctacggtctttttgagcaagaatatgtggaacctttccctacctgaaggattgcattctccggatttaaatgttaagaatatgaccttttgttcccttgatgatatactaaacaagagcagggacaattcagatcttgctgtaatttattcatcattcatatcacatcagttatcaaagtttcctgaatcgaaagggctaattggagcattgatcattgaaccagttatacatggcgctggaggaatgcatatggtcgatccacttttccaacgggttcttgtgaatgagtgccgcaataaaaacattcccattatctttgatgaggtcttcactggtttctggcgcctgggaacagagtctgctgcagaacttctacactgttttccagatatagcctgttttgcgaagctgatgacaggtgggactatacctttgtctgctacattggctacgaatgccgtatttgactcatttattggagactcaaagctgaaggcccttttgcatggacactcatattctgcacatgctatcgggtgcacagctgctgctaaatccatcagatggtttaaagattccgatagaaatcctaatatcagttccaatggaagcttgctcagagagctatgggataataaactagtgtaccaaatctcttcacatcctggaattaaaagagtggttgtgctaggaacgctttgcgctatagaactccaagcacaaggctgcaatgctgggtatgggtcactgtatgcaagctctcttgtgaagcagctccgagaagacggtgtttacatgaggcctttgggaaatgtcatatatctcatgtgcggaccctgcacatctcctaagatctgcaaccaggcactcagaaaagtttacagaagacttgaagaatttagccaatctcagcagaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004015 GO:0004141 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006768 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009102 GO:0009108 GO:0009110 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0016874 GO:0016879 GO:0016882 GO:0017144 GO:0018130 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

AAA_26 Aminotran_3

Protein Analysis

315

Amino Acids

34.75

Weight (kDa)

8.31

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57590
fragaria_vesca	FvH4_4g09130 FvH4_4g09130
malus_domestica	MD13G1267300.v1.1
prunus_persica	Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1
pyrus_communis	pycom13g22810
rosa_chinensis	RchiOBHm_Chr4g0403051
rosa_laevigata	RLG00000009028
rosa_multiflora	Rmu_co8501967.1_g000001 Rmu_sc0001023.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347740
rosa_rugosa	Rorug04G0040400
rosa_samantha	Rh4AG117700 Rh4BG110200 Rh4CG124500 Rh4DG109600
rosa_wichuraiana	Rw4G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	593
AccIII	TCCGGA	1 cut(s)	87
AciI	CCGC	2 cut(s)	321, 860
AclWI	GGATC	2 cut(s)	16, 280
AcsI	RAATTY	1 cut(s)	925
AcuI	CTGAAG	2 cut(s)	92, 541
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	676
AfiI	CCNNNNNNNGG	1 cut(s)	593
AgsI	TTSAA	2 cut(s)	247, 922
AhlI	ACTAGT	1 cut(s)	669
AjnI	CCWGG	3 cut(s)	374, 693, 890
AluBI	AGCT	7 cut(s)	438, 519, 574, 641, 654, 788, 804
AluI	AGCT	7 cut(s)	438, 519, 574, 641, 654, 788, 804
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	1 cut(s)	503
Alw44I	GTGCAC	1 cut(s)	567
AlwI	GGATC	2 cut(s)	16, 280
AlwNI	CAGNNNCTG	2 cut(s)	388, 577
Aor13HI	TCCGGA	1 cut(s)	87
AoxI	GGCC	2 cut(s)	524, 829
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	5 cut(s)	391, 574, 577, 755, 801
ApoI	RAATTY	1 cut(s)	925
ArsI	GACNNNNNNTTYG	2 cut(s)	444, 476
AspLEI	GCGC	3 cut(s)	265, 374, 733
AspS9I	GGNCC	2 cut(s)	525, 862
AvaII	GGWCC	1 cut(s)	862
BaeGI	GKGCMC	1 cut(s)	571
BaeI	ACNNNNGTAYC	2 cut(s)	658, 691
BanI	GGYRCC	1 cut(s)	371
BbsI	GAAGAC	3 cut(s)	348, 818, 921
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	5 cut(s)	378, 561, 564, 742, 813
BccI	CCATC	2 cut(s)	587, 595
BceAI	ACGGC	1 cut(s)	472
BciT130I	CCWGG	3 cut(s)	376, 695, 892
BclI	TGATCA	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	503
BcuI	ACTAGT	1 cut(s)	669
BfaI	CTAG	2 cut(s)	670, 718
BfmI	CTRYAG	2 cut(s)	392, 734
BfoI	RGCGCY	2 cut(s)	266, 375
BglII	AGATCT	2 cut(s)	159, 881
BisI	GCNGC	6 cut(s)	321, 392, 575, 578, 756, 802
BlsI	GCNGC	6 cut(s)	322, 393, 576, 579, 757, 803
Bme1390I	CCNGG	3 cut(s)	376, 695, 892
Bme18I	GGWCC	1 cut(s)	862
BmgT120I	GGNCC	2 cut(s)	525, 862
BmiI	GGNNCC	3 cut(s)	58, 373, 864
BmrFI	CCNGG	3 cut(s)	376, 695, 892
BpiI	GAAGAC	3 cut(s)	348, 818, 921
BpmI	CTGGAG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse1I	ACTGG	2 cut(s)	250, 366
Bse3DI	GCAATG	1 cut(s)	765
Bse8I	GATNNNNATC	1 cut(s)	614
BseAI	TCCGGA	1 cut(s)	87
BseBI	CCWGG	3 cut(s)	376, 695, 892
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	690
BseJI	GATNNNNATC	1 cut(s)	614
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	660, 912
BseNI	ACTGG	2 cut(s)	250, 366
BseSI	GKGCMC	1 cut(s)	571
BseXI	GCAGC	5 cut(s)	378, 561, 564, 742, 813
BseYI	CCCAGC	1 cut(s)	763
BsgI	GTGCAG	2 cut(s)	536, 852
BshFI	GGCC	2 cut(s)	526, 831
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	571
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	2 cut(s)	163, 465
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	1 cut(s)	503
BsmFI	GGGAC	2 cut(s)	163, 465
BsmI	GAATGC	3 cut(s)	81, 278, 489
BsnI	GGCC	2 cut(s)	526, 831
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp13I	TCCGGA	1 cut(s)	87
Bsp143I	GATC	5 cut(s)	21, 159, 239, 285, 881
BspACI	CCGC	2 cut(s)	321, 860
BspANI	GGCC	2 cut(s)	526, 831
BspCNI	CTCAG	2 cut(s)	659, 911
BspEI	TCCGGA	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	58, 373, 864
BspMAI	CTGCAG	1 cut(s)	396
BspPI	GGATC	2 cut(s)	16, 280
BspT107I	GGYRCC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	765
BsrI	ACTGG	2 cut(s)	250, 366
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	5 cut(s)	21, 159, 239, 285, 881
BssNI	GRCGYC	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	376, 695, 892
Bst4CI	ACNGT	4 cut(s)	33, 409, 779, 817
Bst6I	CTCTTC	1 cut(s)	690
BstACI	GRCGYC	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	643, 786
BstDEI	CTNAG	4 cut(s)	646, 878, 898, 938
BstF5I	GGATG	1 cut(s)	690
BstH2I	RGCGCY	2 cut(s)	266, 375
BstHHI	GCGC	3 cut(s)	265, 374, 733
BstKTI	GATC	5 cut(s)	24, 162, 242, 288, 884
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	5 cut(s)	21, 159, 239, 285, 881
BstMWI	GCNNNNNNNGC	6 cut(s)	430, 475, 484, 651, 723, 866
BstNI	CCWGG	3 cut(s)	376, 695, 892
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	3 cut(s)	374, 693, 890
BstSFI	CTRYAG	2 cut(s)	392, 734
BstSLI	GKGCMC	1 cut(s)	571
BstV1I	GCAGC	5 cut(s)	378, 561, 564, 742, 813
BstV2I	GAAGAC	3 cut(s)	348, 818, 921
BstX2I	RGATCY	2 cut(s)	159, 881
BstYI	RGATCY	2 cut(s)	159, 881
BsuRI	GGCC	2 cut(s)	526, 831
BtsCI	GGATG	1 cut(s)	690
BtsIMutI	CAGTG	3 cut(s)	359, 405, 775
Cac8I	GCNNGC	2 cut(s)	643, 786
CaiI	CAGNNNCTG	2 cut(s)	388, 577
CfoI	GCGC	3 cut(s)	265, 374, 733
Cfr13I	GGNCC	2 cut(s)	525, 862
Csp6I	GTAC	1 cut(s)	675
CviAII	CATG	5 cut(s)	259, 535, 556, 825, 855
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	4 cut(s)	646, 878, 898, 938
DinI	GGCGCC	1 cut(s)	373
DpnI	GATC	5 cut(s)	23, 161, 241, 287, 883
DpnII	GATC	5 cut(s)	21, 159, 239, 285, 881
DraI	TTTAAA	2 cut(s)	95, 600
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
Eco147I	AGGCCT	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	862
Eco57I	CTGAAG	2 cut(s)	92, 541
EcoO109I	RGGNCCY	1 cut(s)	525
EcoRII	CCWGG	3 cut(s)	374, 693, 890
EcoT22I	ATGCAT	1 cut(s)	278
EgeI	GGCGCC	1 cut(s)	373
EheI	GGCGCC	1 cut(s)	373
FaeI	CATG	5 cut(s)	262, 538, 559, 828, 858
FaqI	GGGAC	2 cut(s)	163, 465
FatI	CATG	5 cut(s)	258, 534, 555, 824, 854
FauNDI	CATATG	1 cut(s)	278
FbaI	TGATCA	1 cut(s)	239
Fnu4HI	GCNGC	6 cut(s)	321, 392, 575, 578, 756, 802
FokI	GGATG	1 cut(s)	677
Fsp4HI	GCNGC	6 cut(s)	321, 392, 575, 578, 756, 802
FspBI	CTAG	2 cut(s)	670, 718
GlaI	GCGC	3 cut(s)	264, 373, 732
GluI	GCNGC	6 cut(s)	321, 392, 575, 578, 756, 802
GsaI	CCCAGC	1 cut(s)	767
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	266, 375
HaeIII	GGCC	2 cut(s)	526, 831
HapII	CCGG	1 cut(s)	88
HhaI	GCGC	3 cut(s)	265, 374, 733
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	5 cut(s)	262, 538, 559, 828, 858
Hin6I	GCGC	3 cut(s)	263, 372, 731
HinP1I	GCGC	3 cut(s)	263, 372, 731
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	5 cut(s)	214, 385, 496, 511, 604
HpaII	CCGG	1 cut(s)	88
Hpy166II	GTNNAC	4 cut(s)	569, 675, 822, 909
Hpy188I	TCNGA	6 cut(s)	159, 592, 609, 649, 808, 901
Hpy188III	TCNNGA	4 cut(s)	19, 88, 211, 415
Hpy8I	GTNNAC	4 cut(s)	569, 675, 822, 909
HpyAV	CCTTC	2 cut(s)	67, 516
HpyCH4III	ACNGT	4 cut(s)	33, 409, 779, 817
HpyF10VI	GCNNNNNNNGC	6 cut(s)	430, 475, 484, 651, 723, 866
HpyF3I	CTNAG	4 cut(s)	646, 878, 898, 938
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	5 cut(s)	262, 538, 559, 828, 858
HspAI	GCGC	3 cut(s)	263, 372, 731
KasI	GGCGCC	1 cut(s)	371
Kpn2I	TCCGGA	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	239
Kzo9I	GATC	5 cut(s)	21, 159, 239, 285, 881
LmnI	GCTCC	2 cut(s)	232, 809
Lsp1109I	GCAGC	5 cut(s)	378, 561, 564, 742, 813
MaeI	CTAG	2 cut(s)	670, 718
MaeIII	GTNAC	1 cut(s)	773
MalI	GATC	5 cut(s)	23, 161, 241, 287, 883
MboI	GATC	5 cut(s)	21, 159, 239, 285, 881
MboII	GAAGA	6 cut(s)	17, 348, 677, 823, 926, 934
MflI	RGATCY	2 cut(s)	159, 881
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	6 cut(s)	153, 170, 227, 698, 925, 945
Mly113I	GGCGCC	1 cut(s)	372
MlyI	GAGTC	3 cut(s)	394, 490, 505
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	4 cut(s)	35, 262, 345, 821
Mph1103I	ATGCAT	1 cut(s)	278
MroI	TCCGGA	1 cut(s)	87
MseI	TTAA	5 cut(s)	94, 101, 599, 701, 948
MspA1I	CMGCKG	1 cut(s)	574
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	3 cut(s)	376, 695, 892
Mva1269I	GAATGC	3 cut(s)	81, 278, 489
MvaI	CCWGG	3 cut(s)	376, 695, 892
MwoI	GCNNNNNNNGC	6 cut(s)	430, 475, 484, 651, 723, 866
NarI	GGCGCC	1 cut(s)	372
NdeI	CATATG	1 cut(s)	278
NdeII	GATC	5 cut(s)	21, 159, 239, 285, 881
NlaIII	CATG	5 cut(s)	262, 538, 559, 828, 858
NlaIV	GGNNCC	3 cut(s)	58, 373, 864
NmuCI	GTSAC	1 cut(s)	773
NsiI	ATGCAT	1 cut(s)	278
NspI	RCATGY	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	831
PctI	GAATGC	3 cut(s)	81, 278, 489
PfeI	GAWTC	2 cut(s)	214, 604
PflMI	CCANNNNNTGG	1 cut(s)	593
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	6 cut(s)	322, 393, 576, 579, 757, 803
PleI	GAGTC	3 cut(s)	393, 490, 505
PluTI	GGCGCC	1 cut(s)	375
PpsI	GAGTC	3 cut(s)	393, 490, 505
Psp6I	CCWGG	3 cut(s)	374, 693, 890
PspFI	CCCAGC	1 cut(s)	763
PspGI	CCWGG	3 cut(s)	374, 693, 890
PspN4I	GGNNCC	3 cut(s)	58, 373, 864
PspPI	GGNCC	2 cut(s)	525, 862
PsrI	GAACNNNNNNTAC	2 cut(s)	239, 271
PstI	CTGCAG	1 cut(s)	396
PstNI	CAGNNNCTG	2 cut(s)	388, 577
PsuI	RGATCY	2 cut(s)	159, 881
PvuII	CAGCTG	1 cut(s)	574
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
SaqAI	TTAA	5 cut(s)	94, 101, 599, 701, 948
SatI	GCNGC	6 cut(s)	321, 392, 575, 578, 756, 802
Sau3AI	GATC	5 cut(s)	21, 159, 239, 285, 881
Sau96I	GGNCC	2 cut(s)	525, 862
SchI	GAGTC	3 cut(s)	394, 490, 505
ScrFI	CCNGG	3 cut(s)	376, 695, 892
SduI	GDGCHC	1 cut(s)	571
SfcI	CTRYAG	2 cut(s)	392, 734
SfoI	GGCGCC	1 cut(s)	373
SinI	GGWCC	1 cut(s)	862
SmiI	ATTTAAAT	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	669
Sse9I	AATT	6 cut(s)	153, 170, 227, 698, 925, 945
SseBI	AGGCCT	1 cut(s)	831
SsiI	CCGC	2 cut(s)	321, 860
SspDI	GGCGCC	1 cut(s)	371
SspMI	CTAG	2 cut(s)	670, 718
StuI	AGGCCT	1 cut(s)	831
StyD4I	CCNGG	3 cut(s)	374, 693, 890
SwaI	ATTTAAAT	1 cut(s)	95
TaaI	ACNGT	4 cut(s)	33, 409, 779, 817
TaqI	TCGA	2 cut(s)	217, 284
TasI	AATT	6 cut(s)	153, 170, 227, 698, 925, 945
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	214, 604
Tru1I	TTAA	5 cut(s)	94, 101, 599, 701, 948
Tru9I	TTAA	5 cut(s)	94, 101, 599, 701, 948
TscAI	CASTG	3 cut(s)	366, 412, 782
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	5 cut(s)	391, 574, 577, 755, 801
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	2 cut(s)	167, 174
TspRI	CASTG	3 cut(s)	366, 412, 782
Van91I	CCANNNNNTGG	1 cut(s)	593
VneI	GTGCAC	1 cut(s)	567
VpaK11BI	GGWCC	1 cut(s)	862
XapI	RAATTY	1 cut(s)	925
XceI	RCATGY	1 cut(s)	559
XspI	CTAG	2 cut(s)	670, 718
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.