Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012479

Physical Location & Seq

Genomic Coordinates Reverse (-)

18620563 .. 18627675

Gene Structure 7113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG110200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2544 bp

ATGCTCCGCCTCTCCTCTCTCCTTCTCCGCCACAACCGCCACCGCTGCCACCTCACCAAACCCTTCTCCACCACCACTAATCCTCTTCCTGTCACCGTCCCTCTCTCTCACCCCATCTACCTCATATGGTCCTCCAACACCTCCCTCGGCAAAACCCTAGTCTCCACCGGCCTCGCCGCCTCCTCTCTCCGCTCCCACAGCCGCCGCCGCTCCTTCCTCTACCTCAAGCCCGTCCAGACCGGCTTCCCCGCCGACTCCGACTCCCGCTTTGTCTTCTCCAAACTCACCTCCCTCGCCCTCCACCACCGCCGCCTCTCCCCTCATTTCTCTCTCCTCGCCTCCAATCACCTCCTCAAGGCCTCCGCCTCCGCCGCAGCGTCCCTATTAGCCCCCGGAGCTCCCCGAATTTACGATAATGGCATGTGCCATTTGGATTGGTCTGAGGAGAGGAGGGTTGCTGGGGAGAATTCCGGGAATGATGAGCCTTCAAAGCTTGTTTGTAAGACAATGTACGCTTGGGGCGACGCCGTTTCGCCACATTTGGCTGCCGAGAGGGAAAATGGGACTATTGAGGATTCAGCTTTGCTAGAAACGGTGCAGAGGTGTTTGGAAATTGGGGTTGGAAAAGAGAATATGGATCATTTTTGTGTGGTTGAGACGGCTGGCGGGGTTGCCAGTCCAGGACCTTCTGGTTCACTTCAATGTGACCTGTACAGGCCTTTTCGTTTGCCTGCAATTCTTGTTGGAGATGGGCGTTTAGGTGGGATTTCCGGAACCATTTCAGCTTATGAAACTTTGAAACTCCGGGGTTATGATGTTGTCGCGGTTGTTCTGGAGGATCATGGCCTTGTAAATGAGGTGCCTTTAGCATCATATCTTAGAAACAGTGTTCCAGTGCTTGTTCTGCCACCTGTTCCACAAGACTTGTCAGATGACCTTATGGAATGGTACGATGATGCTCATAATGTTTTTGATTCGCTCATGGAGATAATGCTATCAGCTTACTCTGAGAGAGTCAAGAGATTGCGTGACATGCCAAAGAGGGCAGTAGATGTTTTTTGGTGGCCATTTACTCAGCACACATTTGTACCAGAAGGAAATGTTACAGTGATTGATTCACGCTGTGGTGAGAACTTTGCAGTCTTCAAGAATGATGATGCCATAACTGAACAGTTTGACGCTTGTGCAAGTTGGTGGACTCAAGGACCTGATGCTACTTTACAGACTGAGCTTGCCAGGGATATCGGTTATGCAGCTGCAAGATTTGGGCATGTAATGTTTCCTGAGAATGTTTATGAGCCAGCCTTAGAATGTGCAGAACTTTTGCTTGAAGGTGTTGGAAATGATTGGGCTTCTCGAACGTACTTTTCAGACAATGGATCTACAGCAATTGAGATTGCACTGAAGATGGCATTCCGTAAATTCTCTCATGATCACGGACTTCTTTTGGAATCTCTGAAGGAGAATTCAACTGAGAGATGTCCAGAGCTTGTGGTCCTAGCTCTTAATGGATCTTATCATGGTGATACTTTGGGTGCTATGGAAGTGCAAGCACCGTCATGTTTTACCGGCTTCCTACAACAACCATGGTATAAAGGAAGAGGTTTTTTTCTTGATCCTCCTACGGTCTTTTTGAGCAAGAATATGTGGAACCTTTCCCTACCTGAAGGATTGTGTTCTCCGGATTTAAATGTTAAGAATATGACCTTTTGTTCCCTTGATGATATACTAAACAAGAGCAGGGACAAGTCAGATCTTGCTGTAATTTATTCTGCATTCATATCACATCAGTTATCAAAGTTTCCTGAATCGAAAGGGCTAATTGGAGCATTGATTATTGAACCAGTTATACATGGTTCTGGAGGAATGCATATGATTGATCCACTTTTCCAACGGGTTCTTGTGAATGAATGCCGGAATAAAAACATTCCCGTTATCTTTGATGAGGTCTTCACTGGTTTCTGGCGCCTGGGAACAGAGTCTGCTGCAGAACTTCTATGCTGTTTTCCAGATATAGCCTGTTTCGGGAAGCTGATGACAGGTGGGACTATACCCTTGTCTGCTACATTGGCTACGAATGCTATATTTGACTCATTTATTGGAGACTCAAAGCTGAAGGCCCTTTTGCATGGACACTCATATTCTGCACATGCCATCGGGTGCACAGCTGCTGCTAAATCCATCAGATGGTTTAAAGATTCTGATAGAAATCCTAATATCAGTTCCAAAGGAAGCTTGCTCAGAGAGCTATGGGATAACAAACTAGTGTACCAAATCTCTACACATCCTGGAATTAAAAGAGTGGTTGTGCTAGGAACGCTTTGCGCTATAGAACTCCAAGCAGAAGGCTGCAATGCTGGGTATGGGTCACTGTATGCAAGCTCTCTTGTGAAGCAGCTCCGAGAAGACGGTGTTTACATGAGGCCTTTGGGAAATGTCATATATCTCATGTGCGGACCCTGCACATCTCCTAAGATCTGCAACCAGGCACTCAGAAAAGTTTACAGAAGACTTGAAGAATTTAGCCAATCTCAGCAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004015 GO:0004141 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006768 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009102 GO:0009108 GO:0009110 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0016874 GO:0016879 GO:0016882 GO:0017144 GO:0018130 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

AAA_26 Aminotran_3

Protein Analysis

847

Amino Acids

93.53

Weight (kDa)

6.18

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_26	PF13500	171 - 279	5.9e-09	AAA domain
Aminotran_3	PF00202	418 - 519	8e-09	Aminotransferase class-III
Aminotran_3	PF00202	603 - 831	3.6e-33	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57590
fragaria_vesca	FvH4_4g09130 FvH4_4g09130
malus_domestica	MD13G1267300.v1.1
prunus_persica	Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1 Prupe.1G089300_v2.0.a1
pyrus_communis	pycom13g22810
rosa_chinensis	RchiOBHm_Chr4g0403051
rosa_laevigata	RLG00000009028
rosa_multiflora	Rmu_co8501967.1_g000001 Rmu_sc0001023.1_g000026
rosa_roxburghii	Rroxscaffold_5G00347740
rosa_rugosa	Rorug04G0040400
rosa_samantha	Rh4AG117700 Rh4BG110200 Rh4CG124500 Rh4DG109600
rosa_wichuraiana	Rw4G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	859, 1965
AccB7I	CCANNNNNTGG	1 cut(s)	2187
AccBSI	CCGCTC	2 cut(s)	192, 210
AccII	CGCG	1 cut(s)	824
AccIII	TCCGGA	2 cut(s)	770, 1681
AclWI	GGATC	6 cut(s)	645, 846, 1387, 1519, 1610, 1874
AcoI	YGGCCR	1 cut(s)	1064
AcsI	RAATTY	5 cut(s)	405, 466, 1421, 1465, 2519
AcuI	CTGAAG	4 cut(s)	1424, 1478, 1686, 2135
AcyI	GRCGYC	2 cut(s)	525, 1966
AdeI	CACNNNGTG	1 cut(s)	1124
AfaI	GTAC	6 cut(s)	512, 713, 950, 1089, 1364, 2270
AfiI	CCNNNNNNNGG	3 cut(s)	355, 2025, 2187
AgsI	TTSAA	8 cut(s)	489, 701, 799, 1147, 1331, 1470, 1841, 2516
AhlI	ACTAGT	1 cut(s)	2263
AjnI	CCWGG	5 cut(s)	679, 1235, 1968, 2287, 2484
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
Alw21I	GWGCWC	2 cut(s)	400, 2165
Alw26I	GTCTC	3 cut(s)	166, 650, 2097
Alw44I	GTGCAC	1 cut(s)	2161
AlwI	GGATC	6 cut(s)	645, 846, 1387, 1519, 1610, 1874
AlwNI	CAGNNNCTG	2 cut(s)	1982, 2171
Aor13HI	TCCGGA	2 cut(s)	770, 1681
AoxI	GGCC	7 cut(s)	169, 357, 716, 844, 1064, 2118, 2423
ApaLI	GTGCAC	1 cut(s)	2161
ApoI	RAATTY	5 cut(s)	405, 466, 1421, 1465, 2519
ArsI	GACNNNNNNTTYG	4 cut(s)	144, 176, 251, 283
Asp700I	GAANNNNTTC	1 cut(s)	778
AspLEI	GCGC	2 cut(s)	1968, 2327
AspS9I	GGNCC	6 cut(s)	129, 683, 1205, 1495, 2119, 2456
AsuC2I	CCSGG	3 cut(s)	393, 472, 806
AsuHPI	GGTGA	7 cut(s)	46, 85, 101, 277, 338, 1139, 1535
AvaII	GGWCC	5 cut(s)	129, 683, 1205, 1495, 2456
BaeGI	GKGCMC	1 cut(s)	2165
BaeI	ACNNNNGTAYC	4 cut(s)	1071, 1104, 2252, 2285
BalI	TGGCCA	1 cut(s)	1066
BanI	GGYRCC	2 cut(s)	859, 1965
BanII	GRGCYC	1 cut(s)	400
BbsI	GAAGAC	5 cut(s)	265, 1135, 1942, 2412, 2515
Bbv12I	GWGCWC	2 cut(s)	400, 2165
BccI	CCATC	6 cut(s)	122, 743, 1402, 2162, 2181, 2189
BceAI	ACGGC	2 cut(s)	512, 675
BciT130I	CCWGG	5 cut(s)	681, 1237, 1970, 2289, 2486
BclI	TGATCA	1 cut(s)	1432
BcnI	CCSGG	3 cut(s)	393, 472, 806
BcoDI	GTCTC	3 cut(s)	166, 650, 2097
BcuI	ACTAGT	1 cut(s)	2263
BfaI	CTAG	5 cut(s)	158, 587, 1499, 2264, 2312
BfmI	CTRYAG	3 cut(s)	1383, 1986, 2328
BfoI	RGCGCY	1 cut(s)	1969
BglII	AGATCT	2 cut(s)	1753, 2475
Bme1390I	CCNGG	8 cut(s)	393, 472, 681, 806, 1237, 1970, 2289, 2486
Bme18I	GGWCC	5 cut(s)	129, 683, 1205, 1495, 2456
BmgT120I	GGNCC	6 cut(s)	129, 683, 1205, 1495, 2119, 2456
BmiI	GGNNCC	5 cut(s)	775, 861, 1652, 1967, 2458
BmrFI	CCNGG	8 cut(s)	393, 472, 681, 806, 1237, 1970, 2289, 2486
BmsI	GCATC	4 cut(s)	878, 946, 1147, 1201
BpiI	GAAGAC	5 cut(s)	265, 1135, 1942, 2412, 2515
BpmI	CTGGAG	2 cut(s)	854, 1881
BpuEI	CTTGAG	3 cut(s)	209, 338, 1185
BpuMI	CCSGG	3 cut(s)	393, 472, 806
BsaBI	GATNNNNATC	1 cut(s)	2208
BsaHI	GRCGYC	2 cut(s)	525, 1966
BsaJI	CCNNGG	6 cut(s)	145, 391, 805, 1236, 1586, 1969
BsaWI	WCCGGW	2 cut(s)	770, 1681
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 2025, 2187
Bse118I	RCCGGY	3 cut(s)	167, 239, 1568
Bse1I	ACTGG	4 cut(s)	675, 893, 1844, 1960
Bse3DI	GCAATG	1 cut(s)	2359
Bse8I	GATNNNNATC	1 cut(s)	2208
BseAI	TCCGGA	2 cut(s)	770, 1681
BseBI	CCWGG	5 cut(s)	681, 1237, 1970, 2289, 2486
BseDI	CCNNGG	6 cut(s)	145, 391, 805, 1236, 1586, 1969
BseGI	GGATG	1 cut(s)	2284
BseJI	GATNNNNATC	1 cut(s)	2208
BseLI	CCNNNNNNNGG	3 cut(s)	355, 2025, 2187
BseMI	GCAATG	1 cut(s)	2359
BseMII	CTCAG	8 cut(s)	432, 999, 1088, 1218, 1275, 1464, 2254, 2506
BseNI	ACTGG	4 cut(s)	675, 893, 1844, 1960
BseRI	GAGGAG	6 cut(s)	4, 172, 323, 341, 458, 463
BseSI	GKGCMC	1 cut(s)	2165
BseYI	CCCAGC	2 cut(s)	458, 2357
BsgI	GTGCAG	4 cut(s)	617, 1335, 2130, 2446
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	7 cut(s)	171, 359, 718, 846, 1066, 2120, 2425
BshNI	GGYRCC	2 cut(s)	859, 1965
BsiHKAI	GWGCWC	2 cut(s)	400, 2165
BsiSI	CCGG	9 cut(s)	168, 240, 393, 471, 771, 805, 1569, 1682, 1915
BslFI	GGGAC	5 cut(s)	83, 364, 577, 1757, 2059
BslI	CCNNNNNNNGG	3 cut(s)	355, 2025, 2187
BsmAI	GTCTC	3 cut(s)	166, 650, 2097
BsmBI	CGTCTC	1 cut(s)	650
BsmFI	GGGAC	5 cut(s)	83, 364, 577, 1757, 2059
BsmI	GAATGC	5 cut(s)	1412, 1775, 1872, 1916, 2083
BsnI	GGCC	7 cut(s)	171, 359, 718, 846, 1066, 2120, 2425
Bsp1286I	GDGCHC	2 cut(s)	400, 2165
Bsp13I	TCCGGA	2 cut(s)	770, 1681
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	9 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879, 2475
Bsp19I	CCATGG	1 cut(s)	1586
BspANI	GGCC	7 cut(s)	171, 359, 718, 846, 1066, 2120, 2425
BspCNI	CTCAG	8 cut(s)	433, 1000, 1087, 1219, 1276, 1465, 2253, 2505
BspEI	TCCGGA	2 cut(s)	770, 1681
BspFNI	CGCG	1 cut(s)	824
BspHI	TCATGA	1 cut(s)	1429
BspLI	GGNNCC	5 cut(s)	775, 861, 1652, 1967, 2458
BspMAI	CTGCAG	1 cut(s)	1990
BspPI	GGATC	6 cut(s)	645, 846, 1387, 1519, 1610, 1874
BspT107I	GGYRCC	2 cut(s)	859, 1965
BsrBI	CCGCTC	2 cut(s)	192, 210
BsrDI	GCAATG	1 cut(s)	2359
BsrFI	RCCGGY	3 cut(s)	167, 239, 1568
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	4 cut(s)	675, 893, 1844, 1960
BssAI	RCCGGY	3 cut(s)	167, 239, 1568
BssECI	CCNNGG	6 cut(s)	145, 391, 805, 1236, 1586, 1969
BssMI	GATC	9 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879, 2475
BssNI	GRCGYC	2 cut(s)	525, 1966
BssT1I	CCWWGG	1 cut(s)	1586
Bst2UI	CCWGG	5 cut(s)	681, 1237, 1970, 2289, 2486
Bst4CI	ACNGT	9 cut(s)	97, 595, 887, 1108, 1173, 1557, 1627, 2373, 2411
Bst6I	CTCTTC	2 cut(s)	90, 1594
BstACI	GRCGYC	2 cut(s)	525, 1966
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	7 cut(s)	664, 732, 1233, 1302, 1551, 2237, 2380
BstDSI	CCRYGG	1 cut(s)	1586
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	2284
BstFNI	CGCG	1 cut(s)	824
BstH2I	RGCGCY	1 cut(s)	1969
BstHHI	GCGC	2 cut(s)	1968, 2327
BstKTI	GATC	9 cut(s)	640, 841, 1382, 1435, 1514, 1618, 1756, 1882, 2478
BstMAI	GTCTC	3 cut(s)	166, 650, 2097
BstMBI	GATC	9 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879, 2475
BstNI	CCWGG	5 cut(s)	681, 1237, 1970, 2289, 2486
BstNSI	RCATGY	4 cut(s)	424, 1036, 1274, 2153
BstSCI	CCNGG	8 cut(s)	391, 470, 679, 804, 1235, 1968, 2287, 2484
BstSFI	CTRYAG	3 cut(s)	1383, 1986, 2328
BstSLI	GKGCMC	1 cut(s)	2165
BstUI	CGCG	1 cut(s)	824
BstV2I	GAAGAC	5 cut(s)	265, 1135, 1942, 2412, 2515
BstX2I	RGATCY	4 cut(s)	1379, 1511, 1753, 2475
BstYI	RGATCY	4 cut(s)	1379, 1511, 1753, 2475
BsuRI	GGCC	7 cut(s)	171, 359, 718, 846, 1066, 2120, 2425
BtgI	CCRYGG	1 cut(s)	1586
BtsCI	GGATG	1 cut(s)	2284
BtsIMutI	CAGTG	6 cut(s)	892, 900, 1113, 1400, 1953, 2369
Cac8I	GCNNGC	7 cut(s)	664, 732, 1233, 1302, 1551, 2237, 2380
CaiI	CAGNNNCTG	2 cut(s)	1982, 2171
CciI	TCATGA	1 cut(s)	1429
CfoI	GCGC	2 cut(s)	1968, 2327
Cfr10I	RCCGGY	3 cut(s)	167, 239, 1568
Cfr13I	GGNCC	6 cut(s)	129, 683, 1205, 1495, 2119, 2456
CseI	GACGC	3 cut(s)	366, 533, 1187
Csp6I	GTAC	6 cut(s)	511, 712, 949, 1088, 1363, 2269
CspCI	CAANNNNNGTGG	2 cut(s)	906, 941
CviQI	GTAC	6 cut(s)	511, 712, 949, 1088, 1363, 2269
DinI	GGCGCC	1 cut(s)	1967
DpnI	GATC	9 cut(s)	639, 840, 1381, 1434, 1513, 1617, 1755, 1881, 2477
DpnII	GATC	9 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879, 2475
DraI	TTTAAA	2 cut(s)	1689, 2194
DraIII	CACNNNGTG	1 cut(s)	1124
EaeI	YGGCCR	1 cut(s)	1064
Eam1104I	CTCTTC	2 cut(s)	90, 1594
EarI	CTCTTC	2 cut(s)	90, 1594
EciI	GGCGGA	3 cut(s)	17, 352, 358
Ecl136II	GAGCTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	1586
Eco147I	AGGCCT	3 cut(s)	359, 718, 2425
Eco24I	GRGCYC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	1243
Eco47I	GGWCC	5 cut(s)	129, 683, 1205, 1495, 2456
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	4 cut(s)	1424, 1478, 1686, 2135
EcoICRI	GAGCTC	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	3 cut(s)	683, 1205, 2119
EcoRI	GAATTC	2 cut(s)	466, 1465
EcoRII	CCWGG	5 cut(s)	679, 1235, 1968, 2287, 2484
EcoRV	GATATC	1 cut(s)	1243
EcoT14I	CCWWGG	1 cut(s)	1586
EcoT22I	ATGCAT	1 cut(s)	1872
EcoT38I	GRGCYC	1 cut(s)	400
EgeI	GGCGCC	1 cut(s)	1967
EheI	GGCGCC	1 cut(s)	1967
ErhI	CCWWGG	1 cut(s)	1586
Esp3I	CGTCTC	1 cut(s)	650
FaqI	GGGAC	5 cut(s)	83, 364, 577, 1757, 2059
FauI	CCCGC	3 cut(s)	256, 272, 659
FauNDI	CATATG	2 cut(s)	125, 1872
FbaI	TGATCA	1 cut(s)	1432
FokI	GGATG	1 cut(s)	2271
FriOI	GRGCYC	1 cut(s)	400
FspBI	CTAG	5 cut(s)	158, 587, 1499, 2264, 2312
GlaI	GCGC	2 cut(s)	1967, 2326
GsaI	CCCAGC	2 cut(s)	462, 2361
GsuI	CTGGAG	2 cut(s)	854, 1881
HaeII	RGCGCY	1 cut(s)	1969
HaeIII	GGCC	7 cut(s)	171, 359, 718, 846, 1066, 2120, 2425
HapII	CCGG	9 cut(s)	168, 240, 393, 471, 771, 805, 1569, 1682, 1915
HgaI	GACGC	3 cut(s)	366, 533, 1187
HhaI	GCGC	2 cut(s)	1968, 2327
Hin1I	GRCGYC	2 cut(s)	525, 1966
Hin6I	GCGC	2 cut(s)	1966, 2325
HinP1I	GCGC	2 cut(s)	1966, 2325
HindIII	AAGCTT	2 cut(s)	491, 2233
HpaII	CCGG	9 cut(s)	168, 240, 393, 471, 771, 805, 1569, 1682, 1915
HphI	GGTGA	7 cut(s)	46, 85, 101, 277, 338, 1139, 1535
Hpy166II	GTNNAC	6 cut(s)	695, 1197, 2163, 2269, 2416, 2503
Hpy8I	GTNNAC	6 cut(s)	695, 1197, 2163, 2269, 2416, 2503
Hpy99I	CGWCG	1 cut(s)	527
HpyCH4III	ACNGT	9 cut(s)	97, 595, 887, 1108, 1173, 1557, 1627, 2373, 2411
HpyCH4IV	ACGT	1 cut(s)	1361
HpySE526I	ACGT	1 cut(s)	1361
Hsp92I	GRCGYC	2 cut(s)	525, 1966
HspAI	GCGC	2 cut(s)	1966, 2325
KasI	GGCGCC	1 cut(s)	1965
Kpn2I	TCCGGA	2 cut(s)	770, 1681
Ksp22I	TGATCA	1 cut(s)	1432
Kzo9I	GATC	9 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879, 2475
LmnI	GCTCC	7 cut(s)	9, 197, 215, 395, 403, 1826, 2403
LweI	GCATC	4 cut(s)	878, 946, 1147, 1201
MaeI	CTAG	5 cut(s)	158, 587, 1499, 2264, 2312
MaeII	ACGT	1 cut(s)	1361
MaeIII	GTNAC	5 cut(s)	91, 704, 1028, 1102, 2367
MalI	GATC	9 cut(s)	639, 840, 1381, 1434, 1513, 1617, 1755, 1881, 2477
MbiI	CCGCTC	2 cut(s)	192, 210
MboI	GATC	9 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879, 2475
MboII	GAAGA	9 cut(s)	77, 265, 1135, 1417, 1611, 1942, 2417, 2520, 2528
MfeI	CAATTG	1 cut(s)	1389
MflI	RGATCY	4 cut(s)	1379, 1511, 1753, 2475
MhlI	GDGCHC	2 cut(s)	400, 2165
MlsI	TGGCCA	1 cut(s)	1066
MluNI	TGGCCA	1 cut(s)	1066
Mly113I	GGCGCC	1 cut(s)	1966
MlyI	GAGTC	7 cut(s)	248, 254, 1023, 1192, 1988, 2084, 2099
MmeI	TCCRAC	6 cut(s)	159, 282, 601, 724, 1318, 1915
Mox20I	TGGCCA	1 cut(s)	1066
Mph1103I	ATGCAT	1 cut(s)	1872
MroI	TCCGGA	2 cut(s)	770, 1681
MroXI	GAANNNNTTC	1 cut(s)	778
MscI	TGGCCA	1 cut(s)	1066
MseI	TTAA	6 cut(s)	1506, 1688, 1695, 2193, 2295, 2542
MslI	CAYNNNNRTG	3 cut(s)	645, 700, 1558
Msp20I	TGGCCA	1 cut(s)	1066
MspA1I	CMGCKG	3 cut(s)	45, 1256, 2168
MspI	CCGG	9 cut(s)	168, 240, 393, 471, 771, 805, 1569, 1682, 1915
MspR9I	CCNGG	8 cut(s)	393, 472, 681, 806, 1237, 1970, 2289, 2486
MunI	CAATTG	1 cut(s)	1389
Mva1269I	GAATGC	5 cut(s)	1412, 1775, 1872, 1916, 2083
MvaI	CCWGG	5 cut(s)	681, 1237, 1970, 2289, 2486
MvnI	CGCG	1 cut(s)	824
NarI	GGCGCC	1 cut(s)	1966
NciI	CCSGG	3 cut(s)	393, 472, 806
NcoI	CCATGG	1 cut(s)	1586
NdeI	CATATG	2 cut(s)	125, 1872
NdeII	GATC	9 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879, 2475
NlaIV	GGNNCC	5 cut(s)	775, 861, 1652, 1967, 2458
NmeAIII	GCCGAG	2 cut(s)	126, 574
NmuCI	GTSAC	4 cut(s)	91, 704, 1028, 2367
NsiI	ATGCAT	1 cut(s)	1872
NspI	RCATGY	4 cut(s)	424, 1036, 1274, 2153
PagI	TCATGA	1 cut(s)	1429
PceI	AGGCCT	3 cut(s)	359, 718, 2425
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PctI	GAATGC	5 cut(s)	1412, 1775, 1872, 1916, 2083
PdmI	GAANNNNTTC	1 cut(s)	778
PfeI	GAWTC	6 cut(s)	575, 974, 1115, 1451, 1808, 2198
PflMI	CCANNNNNTGG	1 cut(s)	2187
PfoI	TCCNGGA	3 cut(s)	470, 679, 2287
PleI	GAGTC	7 cut(s)	248, 254, 1022, 1192, 1987, 2084, 2099
PluTI	GGCGCC	1 cut(s)	1969
PpsI	GAGTC	7 cut(s)	248, 254, 1022, 1192, 1987, 2084, 2099
PpuMI	RGGWCCY	2 cut(s)	683, 1205
Psp124BI	GAGCTC	1 cut(s)	400
Psp5II	RGGWCCY	2 cut(s)	683, 1205
Psp6I	CCWGG	5 cut(s)	679, 1235, 1968, 2287, 2484
PspFI	CCCAGC	2 cut(s)	458, 2357
PspGI	CCWGG	5 cut(s)	679, 1235, 1968, 2287, 2484
PspN4I	GGNNCC	5 cut(s)	775, 861, 1652, 1967, 2458
PspPI	GGNCC	6 cut(s)	129, 683, 1205, 1495, 2119, 2456
PspPPI	RGGWCCY	2 cut(s)	683, 1205
PsrI	GAACNNNNNNTAC	2 cut(s)	1833, 1865
PstI	CTGCAG	1 cut(s)	1990
PstNI	CAGNNNCTG	2 cut(s)	1982, 2171
PsuI	RGATCY	4 cut(s)	1379, 1511, 1753, 2475
PvuII	CAGCTG	2 cut(s)	1256, 2168
RsaI	GTAC	6 cut(s)	512, 713, 950, 1089, 1364, 2270
RsaNI	GTAC	6 cut(s)	511, 712, 949, 1088, 1363, 2269
RseI	CAYNNNNRTG	3 cut(s)	645, 700, 1558
SacI	GAGCTC	1 cut(s)	400
SaqAI	TTAA	6 cut(s)	1506, 1688, 1695, 2193, 2295, 2542
Sau3AI	GATC	9 cut(s)	637, 838, 1379, 1432, 1511, 1615, 1753, 1879, 2475
Sau96I	GGNCC	6 cut(s)	129, 683, 1205, 1495, 2119, 2456
SchI	GAGTC	7 cut(s)	248, 254, 1023, 1192, 1988, 2084, 2099
ScrFI	CCNGG	8 cut(s)	393, 472, 681, 806, 1237, 1970, 2289, 2486
SduI	GDGCHC	2 cut(s)	400, 2165
SfaNI	GCATC	4 cut(s)	878, 946, 1147, 1201
SfcI	CTRYAG	3 cut(s)	1383, 1986, 2328
SfoI	GGCGCC	1 cut(s)	1967
SinI	GGWCC	5 cut(s)	129, 683, 1205, 1495, 2456
SmiI	ATTTAAAT	1 cut(s)	1689
SmiMI	CAYNNNNRTG	3 cut(s)	645, 700, 1558
SmlI	CTYRAG	3 cut(s)	224, 353, 1200
SmoI	CTYRAG	3 cut(s)	224, 353, 1200
SpeI	ACTAGT	1 cut(s)	2263
SseBI	AGGCCT	3 cut(s)	359, 718, 2425
SspDI	GGCGCC	1 cut(s)	1965
SspMI	CTAG	5 cut(s)	158, 587, 1499, 2264, 2312
SstI	GAGCTC	1 cut(s)	400
StuI	AGGCCT	3 cut(s)	359, 718, 2425
StyD4I	CCNGG	8 cut(s)	391, 470, 679, 804, 1235, 1968, 2287, 2484
StyI	CCWWGG	1 cut(s)	1586
SwaI	ATTTAAAT	1 cut(s)	1689
TaaI	ACNGT	9 cut(s)	97, 595, 887, 1108, 1173, 1557, 1627, 2373, 2411
TaiI	ACGT	1 cut(s)	1364
TaqI	TCGA	2 cut(s)	1357, 1811
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	6 cut(s)	179, 204, 207, 210, 312, 374
TfiI	GAWTC	6 cut(s)	575, 974, 1115, 1451, 1808, 2198
Tru1I	TTAA	6 cut(s)	1506, 1688, 1695, 2193, 2295, 2542
Tru9I	TTAA	6 cut(s)	1506, 1688, 1695, 2193, 2295, 2542
TscAI	CASTG	6 cut(s)	892, 900, 1113, 1407, 1960, 2376
TseFI	GTSAC	4 cut(s)	91, 704, 1028, 2367
Tsp45I	GTSAC	4 cut(s)	91, 704, 1028, 2367
TspDTI	ATGAA	3 cut(s)	804, 1768, 1923
TspGWI	ACGGA	2 cut(s)	1406, 1452
TspRI	CASTG	6 cut(s)	892, 900, 1113, 1407, 1960, 2376
Van91I	CCANNNNNTGG	1 cut(s)	2187
VneI	GTGCAC	1 cut(s)	2161
VpaK11BI	GGWCC	5 cut(s)	129, 683, 1205, 1495, 2456
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	5 cut(s)	405, 466, 1421, 1465, 2519
XceI	RCATGY	4 cut(s)	424, 1036, 1274, 2153
XmnI	GAANNNNTTC	1 cut(s)	778
XspI	CTAG	5 cut(s)	158, 587, 1499, 2264, 2312
Zsp2I	ATGCAT	1 cut(s)	1872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.