Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003678

Physical Location & Seq

Genomic Coordinates Forward (+)

11535667 .. 11540516

Gene Structure 4850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09660.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGAGGCAAAGACAGAGCCCTACAGTTTCATCATCAGCAAATACACACGCAACCCAAAACCAAATTCCTACAAGATCACAACAACACAAGAAAGCCCCACAATTCGATCTGCTAGACTCACCCAAGAATCTCTATCTATTTTGCTTGGCCTTTCGAATAGTCAATGCTCTGTTGGTTCAGACATATTTCAACCCAGATGAGCACTGGCAAGCTCTTGAAGTTGCTCACCGCATCACTTTTGGGTTTGGCCATTTGACGTGGGAATGGAAGCAGGGGATTCGGAGCTACTTGCATCCTTTGCTCTTTGCTTTCCTTTACAAAGTGCTCGCCTTATTGGGTCTTGATACCCCATTGTTCATGATTAAGTCTCCTCGGCTATTCCAGTCCCTATTCTCTGCATTTGGTGATTTATACCTGTACAAACTCTCTGTCGTCCTCTTTGGTGATCAGGTTGCAAAATGGGCTCTTTTTTCCCAATTGACAAATTGGTTTATGTTTTTCTGCCTCAATCGTACGTTGTCAAATAGTCTGGAGACTATTCTAACCATTGTGAGCTTGTACTACTGGCCCTGTATCAGGCCTTCTTCTAGCAAACTTCCCTTGGGATCTAGAAAGTGGGGTTTGATTTTTGCTGCATTAGCTTGTGCTATTCGACCAACAAGTGCTATCATATGGCTTTATGTTGGGATCCTTGAGCTACTTGTGTCATGCGATAAACCCAGATTCATATTTTTAGAGGTGGCTCCTATTGGGGTCCTGGTGCTTGGTCTTACATTTTTAGTAGATCGATTGATGTACGGCTCATGGATCTTAGTACCTCTAAATTTTCTAAGATTCAATTTTCTTTCATCTGGTGGAGATTATTATGGAACACACAAGTGGCACTGGTACTTCACTCAGGGATTTACTGTCATGGTATTCACTTATTTGCCATTTTCTATAGCTGGCATCATGCAGTCGAAACAATGGAAGCTTTCTGGCCTTATTGCATGGGTTCTTGGACTTTATAGTGTACTAGGCCACAAAGAATTCAGGTTTGTATTGCCTGTGCTTCCCATAGCTTTGATCTTCTCTGGATACGCTTTAGCTGAATTGAAATCATCAATTTCTGGATGTGGTCAAAGGAAGGAATCGGCAGATTACCATAATAAATGCCCTGCAAAAATGCACTTGGCCATCTTTTTCTTGCTTGCTACCAATATTCCAATGGCCTTGTATATGAGTTTGGTTCATCAGAGAGGAACTGAAGATGTTACATACTACCTGTCCAAAGAAGTGGTTGAGGGAAAAGTAACAGATATACTTTTTCTAATGCCTTGCCACGCCACACCTTATTACTCTACTGTACACCGAAACCTTCCAATGCGATTCCTAGACTGCACACCAAGTGAAGAGAAGGGAACCCCAGATGAATCAGATCGATTCATGATGGATCCTGTAGGTTTCGCATCAGAATTTGCCAAAAATTGGTCATTACCGAGTCATATTGTAATATTTGATTCGGAAGAGAAGAAGTTACGGGATTTTCTAGTCTCCCATTCTTTCAAAGAGATAAAAAGATTTTTCCATGCTCACTTTAAAGTGGATCATGATCTTCAAGCATCGGTCGTTGTATATGCTTTGACAGGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031984 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

545

Amino Acids

62.4

Weight (kDa)

9.06

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_22	PF03901	44 - 450	1.4e-116	Alg9-like mannosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14850 AT5G14850 AT5G14850 AT5G14850 AT5G14850 AT5G14850
fragaria_vesca	FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660
malus_domestica	MD13G1260800.v1.1 MD16G1262500.v1.1
prunus_persica	Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1
pyrus_communis	pycom12494g00070 pycom16g23140
rosa_chinensis	RchiOBHm_Chr4g0404951
rosa_laevigata	RLG00000008894
rosa_multiflora	Rmu_sc0000358.1_g000019
rosa_roxburghii	Rroxscaffold_5G00349080
rosa_rugosa	Rorug01G0141900.1 Rorug04G0049800
rosa_samantha	Rh4AG126100 Rh4BG120300 Rh4CG134300 Rh4DG119800
rosa_wichuraiana	Rw4G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1467
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	7 cut(s)	613, 682, 695, 815, 1427, 1440, 1593
AcoI	YGGCCR	2 cut(s)	247, 1173
AcsI	RAATTY	4 cut(s)	63, 823, 1028, 1454
AcuI	CTGAAG	1 cut(s)	1266
AdeI	CACNNNGTG	1 cut(s)	1388
AfaI	GTAC	8 cut(s)	419, 514, 560, 797, 816, 890, 1014, 1347
AfiI	CCNNNNNNNGG	2 cut(s)	576, 1467
AgsI	TTSAA	6 cut(s)	190, 218, 838, 1096, 1546, 1598
AjiI	CACGTC	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	756
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AleI	CACNNNNGTG	1 cut(s)	877
AluBI	AGCT	9 cut(s)	212, 285, 555, 641, 697, 944, 973, 1061, 1088
AluI	AGCT	9 cut(s)	212, 285, 555, 641, 697, 944, 973, 1061, 1088
Alw21I	GWGCWC	2 cut(s)	204, 327
Alw26I	GTCTC	3 cut(s)	372, 527, 1537
AlwI	GGATC	7 cut(s)	613, 682, 695, 815, 1427, 1440, 1593
AoxI	GGCC	8 cut(s)	147, 247, 566, 578, 979, 1018, 1173, 1209
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	4 cut(s)	63, 823, 1028, 1454
ArsI	GACNNNNNNTTYG	2 cut(s)	414, 446
AspS9I	GGNCC	2 cut(s)	567, 754
AsuHPI	GGTGA	4 cut(s)	111, 218, 416, 455
AsuII	TTCGAA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	754
BalI	TGGCCA	2 cut(s)	249, 1175
BamHI	GGATCC	2 cut(s)	687, 1432
BanII	GRGCYC	2 cut(s)	20, 466
BarI	GAAGNNNNNNTAC	2 cut(s)	565, 597
Bbv12I	GWGCWC	2 cut(s)	204, 327
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	1184, 1423
BceAI	ACGGC	1 cut(s)	814
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	1 cut(s)	758
BciVI	GTATCC	1 cut(s)	1070
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	3 cut(s)	372, 527, 1537
BfaI	CTAG	6 cut(s)	113, 588, 609, 1016, 1373, 1529
BfmI	CTRYAG	3 cut(s)	21, 939, 1437
BfuI	GTATCC	1 cut(s)	1070
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	1 cut(s)	758
Bme18I	GGWCC	1 cut(s)	754
BmgBI	CACGTC	1 cut(s)	258
BmgT120I	GGNCC	2 cut(s)	567, 754
BmiI	GGNNCC	5 cut(s)	689, 744, 755, 1402, 1434
BmrFI	CCNGG	1 cut(s)	758
BmsI	GCATC	5 cut(s)	240, 301, 957, 1457, 1610
BpmI	CTGGAG	1 cut(s)	551
Bpu14I	TTCGAA	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	713
Bsa29I	ATCGAT	2 cut(s)	787, 1420
BsaBI	GATNNNNATC	1 cut(s)	1590
BsaJI	CCNNGG	2 cut(s)	371, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	576, 1467
Bse1I	ACTGG	4 cut(s)	209, 382, 569, 890
Bse8I	GATNNNNATC	1 cut(s)	1590
BseBI	CCWGG	1 cut(s)	758
BseCI	ATCGAT	2 cut(s)	787, 1420
BseDI	CCNNGG	2 cut(s)	371, 600
BseGI	GGATG	2 cut(s)	292, 1118
BseJI	GATNNNNATC	1 cut(s)	1590
BseLI	CCNNNNNNNGG	2 cut(s)	576, 1467
BseMII	CTCAG	1 cut(s)	911
BseNI	ACTGG	4 cut(s)	209, 382, 569, 890
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	619
BsgI	GTGCAG	1 cut(s)	1363
Bsh1285I	CGRYCG	1 cut(s)	1608
BshFI	GGCC	8 cut(s)	149, 249, 568, 580, 981, 1020, 1175, 1211
BshVI	ATCGAT	2 cut(s)	787, 1420
BsiEI	CGRYCG	1 cut(s)	1608
BsiHKAI	GWGCWC	2 cut(s)	204, 327
BsiWI	CGTACG	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	576, 1467
BsmAI	GTCTC	3 cut(s)	372, 527, 1537
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	8 cut(s)	149, 249, 568, 580, 981, 1020, 1175, 1211
Bsp119I	TTCGAA	1 cut(s)	154
Bsp1286I	GDGCHC	4 cut(s)	20, 204, 327, 466
Bsp1407I	TGTACA	2 cut(s)	417, 1345
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	8 cut(s)	149, 249, 568, 580, 981, 1020, 1175, 1211
BspCNI	CTCAG	1 cut(s)	910
BspDI	ATCGAT	2 cut(s)	787, 1420
BspHI	TCATGA	4 cut(s)	357, 1425, 1588, 1631
BspLI	GGNNCC	5 cut(s)	689, 744, 755, 1402, 1434
BspPI	GGATC	7 cut(s)	613, 682, 695, 815, 1427, 1440, 1593
BspT104I	TTCGAA	1 cut(s)	154
BsrGI	TGTACA	2 cut(s)	417, 1345
BsrI	ACTGG	4 cut(s)	209, 382, 569, 890
BssECI	CCNNGG	2 cut(s)	371, 600
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	3 cut(s)	25, 910, 1345
Bst6I	CTCTTC	2 cut(s)	1386, 1500
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstAUI	TGTACA	2 cut(s)	417, 1345
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	4 cut(s)	210, 327, 946, 1191
BstDEI	CTNAG	3 cut(s)	811, 830, 897
BstENI	CCTNNNNNAGG	1 cut(s)	574
BstF5I	GGATG	2 cut(s)	292, 1118
BstMAI	GTCTC	3 cut(s)	372, 527, 1537
BstMCI	CGRYCG	1 cut(s)	1608
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 461, 638
BstNI	CCWGG	1 cut(s)	758
BstSCI	CCNGG	1 cut(s)	756
BstSFI	CTRYAG	3 cut(s)	21, 939, 1437
BstV1I	GCAGC	1 cut(s)	619
BstX2I	RGATCY	4 cut(s)	605, 687, 807, 1432
BstXI	CCANNNNNNTGG	1 cut(s)	1276
BstYI	RGATCY	4 cut(s)	605, 687, 807, 1432
Bsu15I	ATCGAT	2 cut(s)	787, 1420
BsuI	GTATCC	1 cut(s)	1070
BsuRI	GGCC	8 cut(s)	149, 249, 568, 580, 981, 1020, 1175, 1211
BsuTUI	ATCGAT	2 cut(s)	787, 1420
BtrI	CACGTC	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	292, 1118
BtsIMutI	CAGTG	2 cut(s)	202, 883
Cac8I	GCNNGC	4 cut(s)	210, 327, 946, 1191
CciI	TCATGA	4 cut(s)	357, 1425, 1588, 1631
Cfr13I	GGNCC	2 cut(s)	567, 754
ClaI	ATCGAT	2 cut(s)	787, 1420
Csp6I	GTAC	8 cut(s)	418, 513, 559, 796, 815, 889, 1013, 1346
CviQI	GTAC	8 cut(s)	418, 513, 559, 796, 815, 889, 1013, 1346
DdeI	CTNAG	3 cut(s)	811, 830, 897
DraI	TTTAAA	1 cut(s)	1579
DraIII	CACNNNGTG	1 cut(s)	1388
EaeI	YGGCCR	2 cut(s)	247, 1173
Eam1104I	CTCTTC	2 cut(s)	1386, 1500
EarI	CTCTTC	2 cut(s)	1386, 1500
Eco130I	CCWWGG	1 cut(s)	600
Eco147I	AGGCCT	1 cut(s)	580
Eco24I	GRGCYC	2 cut(s)	20, 466
Eco47I	GGWCC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	1266
EcoNI	CCTNNNNNAGG	1 cut(s)	574
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRI	GAATTC	1 cut(s)	1028
EcoRII	CCWGG	1 cut(s)	756
EcoT14I	CCWWGG	1 cut(s)	600
EcoT38I	GRGCYC	2 cut(s)	20, 466
ErhI	CCWWGG	1 cut(s)	600
FaqI	GGGAC	1 cut(s)	370
FauNDI	CATATG	1 cut(s)	671
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	2 cut(s)	279, 1125
FriOI	GRGCYC	2 cut(s)	20, 466
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	6 cut(s)	113, 588, 609, 1016, 1373, 1529
GluI	GCNGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	551
HaeIII	GGCC	8 cut(s)	149, 249, 568, 580, 981, 1020, 1175, 1211
HindIII	AAGCTT	1 cut(s)	971
HphI	GGTGA	4 cut(s)	111, 218, 416, 455
Hpy166II	GTNNAC	2 cut(s)	1013, 1348
Hpy188I	TCNGA	6 cut(s)	180, 282, 1236, 1417, 1453, 1504
Hpy8I	GTNNAC	2 cut(s)	1013, 1348
HpyAV	CCTTC	4 cut(s)	591, 1120, 1367, 1390
HpyCH4III	ACNGT	3 cut(s)	25, 910, 1345
HpyCH4IV	ACGT	2 cut(s)	257, 515
HpyCH4V	TGCA	9 cut(s)	292, 398, 455, 635, 955, 989, 1160, 1168, 1380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 461, 638
HpyF3I	CTNAG	3 cut(s)	811, 830, 897
HpySE526I	ACGT	2 cut(s)	257, 515
Ksp22I	TGATCA	1 cut(s)	445
LmnI	GCTCC	2 cut(s)	282, 748
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	5 cut(s)	240, 301, 957, 1457, 1610
MaeI	CTAG	6 cut(s)	113, 588, 609, 1016, 1373, 1529
MaeII	ACGT	2 cut(s)	257, 515
MaeIII	GTNAC	3 cut(s)	1252, 1291, 1515
MboII	GAAGA	7 cut(s)	576, 1060, 1259, 1403, 1517, 1522, 1586
MfeI	CAATTG	1 cut(s)	476
MflI	RGATCY	4 cut(s)	605, 687, 807, 1432
MhlI	GDGCHC	4 cut(s)	20, 204, 327, 466
MlsI	TGGCCA	2 cut(s)	249, 1175
MluNI	TGGCCA	2 cut(s)	249, 1175
MlyI	GAGTC	2 cut(s)	110, 1489
MnlI	CCTC	7 cut(s)	381, 446, 515, 730, 828, 1232, 1276
Mox20I	TGGCCA	2 cut(s)	249, 1175
MscI	TGGCCA	2 cut(s)	249, 1175
MseI	TTAA	2 cut(s)	363, 1578
MslI	CAYNNNNRTG	1 cut(s)	877
Msp20I	TGGCCA	2 cut(s)	249, 1175
MspR9I	CCNGG	1 cut(s)	758
MunI	CAATTG	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	758
MwoI	GCNNNNNNNGC	3 cut(s)	298, 461, 638
NdeI	CATATG	1 cut(s)	671
NlaIV	GGNNCC	5 cut(s)	689, 744, 755, 1402, 1434
NmeAIII	GCCGAG	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	154
OliI	CACNNNNGTG	1 cut(s)	877
PagI	TCATGA	4 cut(s)	357, 1425, 1588, 1631
PceI	AGGCCT	1 cut(s)	580
PfeI	GAWTC	9 cut(s)	127, 277, 723, 834, 1130, 1368, 1412, 1422, 1499
Pfl23II	CGTACG	1 cut(s)	512
PflMI	CCANNNNNTGG	1 cut(s)	1467
PkrI	GCNGC	1 cut(s)	634
PleI	GAGTC	2 cut(s)	110, 1488
PpsI	GAGTC	2 cut(s)	110, 1488
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	756
PspGI	CCWGG	1 cut(s)	756
PspLI	CGTACG	1 cut(s)	512
PspN4I	GGNNCC	5 cut(s)	689, 744, 755, 1402, 1434
PspPI	GGNCC	2 cut(s)	567, 754
PspPPI	RGGWCCY	1 cut(s)	754
PsuI	RGATCY	4 cut(s)	605, 687, 807, 1432
RsaI	GTAC	8 cut(s)	419, 514, 560, 797, 816, 890, 1014, 1347
RsaNI	GTAC	8 cut(s)	418, 513, 559, 796, 815, 889, 1013, 1346
RseI	CAYNNNNRTG	1 cut(s)	877
SaqAI	TTAA	2 cut(s)	363, 1578
SatI	GCNGC	1 cut(s)	633
Sau96I	GGNCC	2 cut(s)	567, 754
SchI	GAGTC	2 cut(s)	110, 1489
ScrFI	CCNGG	1 cut(s)	758
SduI	GDGCHC	4 cut(s)	20, 204, 327, 466
SfaNI	GCATC	5 cut(s)	240, 301, 957, 1457, 1610
SfcI	CTRYAG	3 cut(s)	21, 939, 1437
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	1 cut(s)	754
SmiMI	CAYNNNNRTG	1 cut(s)	877
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
SseBI	AGGCCT	1 cut(s)	580
SsiI	CCGC	1 cut(s)	229
SspI	AATATT	2 cut(s)	1201, 1494
SspMI	CTAG	6 cut(s)	113, 588, 609, 1016, 1373, 1529
StuI	AGGCCT	1 cut(s)	580
StyD4I	CCNGG	1 cut(s)	756
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	3 cut(s)	25, 910, 1345
TaiI	ACGT	2 cut(s)	260, 518
TaqI	TCGA	6 cut(s)	105, 154, 652, 787, 959, 1420
TaqII	GACCGA	1 cut(s)	1594
TatI	WGTACW	4 cut(s)	417, 558, 1012, 1345
TfiI	GAWTC	9 cut(s)	127, 277, 723, 834, 1130, 1368, 1412, 1422, 1499
Tru1I	TTAA	2 cut(s)	363, 1578
Tru9I	TTAA	2 cut(s)	363, 1578
TscAI	CASTG	2 cut(s)	209, 890
TseI	GCWGC	1 cut(s)	632
TspDTI	ATGAA	7 cut(s)	18, 346, 715, 837, 1220, 1414, 1425
TspRI	CASTG	2 cut(s)	209, 890
Van91I	CCANNNNNTGG	1 cut(s)	1467
VpaK11BI	GGWCC	1 cut(s)	754
XagI	CCTNNNNNAGG	1 cut(s)	574
XapI	RAATTY	4 cut(s)	63, 823, 1028, 1454
XbaI	TCTAGA	1 cut(s)	608
XcmI	CCANNNNNNNNNTGG	2 cut(s)	201, 1204
XspI	CTAG	6 cut(s)	113, 588, 609, 1016, 1373, 1529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.