Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000358.1

Orthogroup ID

OG0003678

Physical Location & Seq

Genomic Coordinates Reverse (-)

139529 .. 143098

Gene Structure 3570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000358.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

atgttaaatgctctgttggttcagacctatttcaacccagatgagcactggcaagctcttgaagttgctcaccgcatcacttttgggtttggccatttgacgtgggagtggaagaaggggattcggagctacttgcatcctttgctctttgctttcctttacaaagtgcttgccttgttaggtcttgataccccatggttcatggtcaaggcacctcggctattccagtccctcttctctgcatttggtgatttatacctttacaaattctctgtcatcctctttggcgaccaggttgcaaaatgggctcttttttcccaattgacaaattggtttatgtttttctgtctcactcgtacattatcgaatagtctggagactgttcttaccattgtgagcttgtactactggccctgtatcaggccttcttccagcaaacttccgttggaatctagaaagtggggtttgcttattgctgcattagcttgtgctattcgaccaacaagtgccatcatatggctttatgttggggtccttgagctatttgtgtcacgcgataaactcagattcatatttttggaggtggctcctattggggtcctggtgcttgggcttacatttttaatagatcgattgatgtacggctcatgggtcttagtacctcttaatttcctaagattcaattttctttcctctggtggagattattatggaactcacaagtggcactggtacttcactcagggattttctgtcatggtattttcttttttaccattttctatagctggcatcatgcagtcgaaacaatggaagctttctggccttattgcatgggttctggtactttatagtgtactaggccacaaagaattcaggtttgttttgcctgtgcttcctatagctttgatattctctggatactcattaactgcattaaaaacatcagtttctggaaatggtcaaaggaagaaatcggcagattaccataataaattctctgcaaaaatgctgttggccatctttttcttgctcgctaccaatattccaatggccttgtatatgagtttggttcatcagagaggaactgaagatgttacttactatctgtccaatgaagtggtcgagggaaaagtaacagacatactttttctaatgccttgccacgccacaccttactactctactttgcaccgaaaccttccaatgcgatttctagactgcacaccgagtgaagagaaaggaatcccagatgaatcagatcaattcatgatggatcctgttggttttgcatcagaatttgcaaaaaattggtctttaccgagtcatattgtattatttgattcggaagaaaagaagttacgggattttctagtctcccattctttcaaagagatacaaagatttttccatgctcacttcaaagtggatcatgatcttcaagcatcagtcgttgtatatgctttgacaggctcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031984 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

492

Amino Acids

56.64

Weight (kDa)

8.94

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14850 AT5G14850 AT5G14850 AT5G14850 AT5G14850 AT5G14850
fragaria_vesca	FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660
malus_domestica	MD13G1260800.v1.1 MD16G1262500.v1.1
prunus_persica	Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1
pyrus_communis	pycom12494g00070 pycom16g23140
rosa_chinensis	RchiOBHm_Chr4g0404951
rosa_laevigata	RLG00000008894
rosa_multiflora	Rmu_sc0000358.1_g000019
rosa_roxburghii	Rroxscaffold_5G00349080
rosa_rugosa	Rorug01G0141900.1 Rorug04G0049800
rosa_samantha	Rh4AG126100 Rh4BG120300 Rh4CG134300 Rh4DG119800
rosa_wichuraiana	Rw4G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AccB7I	CCANNNNNTGG	1 cut(s)	516
AccII	CGCG	1 cut(s)	555
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	3 cut(s)	1271, 1284, 1437
AcoI	YGGCCR	2 cut(s)	91, 1017
AcsI	RAATTY	4 cut(s)	266, 872, 995, 1298
AcuI	CTGAAG	1 cut(s)	1110
AdeI	CACNNNGTG	1 cut(s)	1232
AfaI	GTAC	7 cut(s)	358, 404, 641, 660, 734, 846, 858
AfiI	CCNNNNNNNGG	2 cut(s)	420, 516
AgsI	TTSAA	6 cut(s)	34, 62, 682, 1390, 1423, 1442
AjiI	CACGTC	1 cut(s)	102
AjnI	CCWGG	2 cut(s)	291, 600
AluBI	AGCT	8 cut(s)	56, 129, 399, 485, 541, 788, 817, 905
AluI	AGCT	8 cut(s)	56, 129, 399, 485, 541, 788, 817, 905
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	3 cut(s)	353, 371, 1381
AlwI	GGATC	3 cut(s)	1271, 1284, 1437
AlwNI	CAGNNNCTG	1 cut(s)	953
AoxI	GGCC	7 cut(s)	91, 410, 422, 823, 862, 1017, 1053
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	4 cut(s)	266, 872, 995, 1298
ArsI	GACNNNNNNTTYG	4 cut(s)	258, 290, 1298, 1330
AspS9I	GGNCC	3 cut(s)	411, 532, 598
AsuHPI	GGTGA	2 cut(s)	62, 260
AvaII	GGWCC	2 cut(s)	532, 598
BalI	TGGCCA	2 cut(s)	93, 1019
BamHI	GGATCC	1 cut(s)	1276
BanI	GGYRCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	310
BarI	GAAGNNNNNNTAC	2 cut(s)	409, 441
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	518, 1028, 1267
BceAI	ACGGC	1 cut(s)	658
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	2 cut(s)	293, 602
BciVI	GTATCC	1 cut(s)	914
BcoDI	GTCTC	3 cut(s)	353, 371, 1381
BfaI	CTAG	4 cut(s)	453, 860, 1217, 1373
BfmI	CTRYAG	2 cut(s)	783, 900
BfuI	GTATCC	1 cut(s)	914
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	2 cut(s)	293, 602
Bme18I	GGWCC	2 cut(s)	532, 598
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	3 cut(s)	411, 532, 598
BmiI	GGNNCC	6 cut(s)	213, 533, 588, 599, 1278, 1474
BmrFI	CCNGG	2 cut(s)	293, 602
BmsI	GCATC	5 cut(s)	84, 145, 801, 1301, 1454
BpmI	CTGGAG	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	557
Bsa29I	ATCGAT	1 cut(s)	631
BsaBI	GATNNNNATC	1 cut(s)	1434
BsaJI	CCNNGG	2 cut(s)	194, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	420, 516
Bse1I	ACTGG	4 cut(s)	53, 226, 413, 734
Bse8I	GATNNNNATC	1 cut(s)	1434
BseBI	CCWGG	2 cut(s)	293, 602
BseCI	ATCGAT	1 cut(s)	631
BseDI	CCNNGG	2 cut(s)	194, 215
BseGI	GGATG	2 cut(s)	136, 276
BseJI	GATNNNNATC	1 cut(s)	1434
BseLI	CCNNNNNNNGG	2 cut(s)	420, 516
BseMII	CTCAG	2 cut(s)	577, 755
BseNI	ACTGG	4 cut(s)	53, 226, 413, 734
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	1207
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	7 cut(s)	93, 412, 424, 825, 864, 1019, 1055
BshNI	GGYRCC	1 cut(s)	211
BshVI	ATCGAT	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	420, 516
BsmAI	GTCTC	3 cut(s)	353, 371, 1381
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	7 cut(s)	93, 412, 424, 825, 864, 1019, 1055
Bsp1286I	GDGCHC	2 cut(s)	48, 310
Bsp143I	GATC	5 cut(s)	628, 1261, 1276, 1429, 1435
Bsp19I	CCATGG	1 cut(s)	194
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	7 cut(s)	93, 412, 424, 825, 864, 1019, 1055
BspCNI	CTCAG	2 cut(s)	576, 754
BspDI	ATCGAT	1 cut(s)	631
BspFNI	CGCG	1 cut(s)	555
BspHI	TCATGA	2 cut(s)	1269, 1432
BspLI	GGNNCC	6 cut(s)	213, 533, 588, 599, 1278, 1474
BspPI	GGATC	3 cut(s)	1271, 1284, 1437
BspT107I	GGYRCC	1 cut(s)	211
BsrI	ACTGG	4 cut(s)	53, 226, 413, 734
BssECI	CCNNGG	2 cut(s)	194, 215
BssMI	GATC	5 cut(s)	628, 1261, 1276, 1429, 1435
BssT1I	CCWWGG	1 cut(s)	194
Bst2UI	CCWGG	2 cut(s)	293, 602
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	2 cut(s)	239, 1230
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstC8I	GCNNGC	4 cut(s)	54, 171, 790, 1035
BstDEI	CTNAG	4 cut(s)	563, 655, 674, 741
BstDSI	CCRYGG	1 cut(s)	194
BstENI	CCTNNNNNAGG	1 cut(s)	418
BstF5I	GGATG	2 cut(s)	136, 276
BstFNI	CGCG	1 cut(s)	555
BstKTI	GATC	5 cut(s)	631, 1264, 1279, 1432, 1438
BstMAI	GTCTC	3 cut(s)	353, 371, 1381
BstMBI	GATC	5 cut(s)	628, 1261, 1276, 1429, 1435
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 305, 482
BstNI	CCWGG	2 cut(s)	293, 602
BstSCI	CCNGG	2 cut(s)	291, 600
BstSFI	CTRYAG	2 cut(s)	783, 900
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	1276
BstXI	CCANNNNNNTGG	1 cut(s)	1120
BstYI	RGATCY	1 cut(s)	1276
Bsu15I	ATCGAT	1 cut(s)	631
BsuI	GTATCC	1 cut(s)	914
BsuRI	GGCC	7 cut(s)	93, 412, 424, 825, 864, 1019, 1055
BsuTUI	ATCGAT	1 cut(s)	631
BtgI	CCRYGG	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	136, 276
BtsIMutI	CAGTG	2 cut(s)	46, 727
Cac8I	GCNNGC	4 cut(s)	54, 171, 790, 1035
CaiI	CAGNNNCTG	1 cut(s)	953
CciI	TCATGA	2 cut(s)	1269, 1432
Cfr13I	GGNCC	3 cut(s)	411, 532, 598
ClaI	ATCGAT	1 cut(s)	631
CsiI	ACCWGGT	1 cut(s)	291
Csp6I	GTAC	7 cut(s)	357, 403, 640, 659, 733, 845, 857
CviAII	CATG	9 cut(s)	195, 202, 648, 757, 796, 834, 1270, 1412, 1433
CviQI	GTAC	7 cut(s)	357, 403, 640, 659, 733, 845, 857
DdeI	CTNAG	4 cut(s)	563, 655, 674, 741
DpnI	GATC	5 cut(s)	630, 1263, 1278, 1431, 1437
DpnII	GATC	5 cut(s)	628, 1261, 1276, 1429, 1435
DraIII	CACNNNGTG	1 cut(s)	1232
EaeI	YGGCCR	2 cut(s)	91, 1017
Eam1104I	CTCTTC	2 cut(s)	239, 1230
EarI	CTCTTC	2 cut(s)	239, 1230
Eco130I	CCWWGG	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	532, 598
Eco57I	CTGAAG	1 cut(s)	1110
EcoNI	CCTNNNNNAGG	1 cut(s)	418
EcoO109I	RGGNCCY	2 cut(s)	532, 598
EcoRI	GAATTC	1 cut(s)	872
EcoRII	CCWGG	2 cut(s)	291, 600
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	9 cut(s)	198, 205, 651, 760, 799, 837, 1273, 1415, 1436
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	9 cut(s)	194, 201, 647, 756, 795, 833, 1269, 1411, 1432
FauNDI	CATATG	1 cut(s)	515
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	2 cut(s)	123, 263
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	4 cut(s)	453, 860, 1217, 1373
GluI	GCNGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	7 cut(s)	93, 412, 424, 825, 864, 1019, 1055
Hin1II	CATG	9 cut(s)	198, 205, 651, 760, 799, 837, 1273, 1415, 1436
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	8 cut(s)	121, 449, 567, 678, 1245, 1256, 1324, 1343
HphI	GGTGA	2 cut(s)	62, 260
Hpy166II	GTNNAC	1 cut(s)	857
Hpy188I	TCNGA	7 cut(s)	24, 126, 566, 1080, 1261, 1297, 1348
Hpy8I	GTNNAC	1 cut(s)	857
HpyAV	CCTTC	3 cut(s)	109, 435, 1211
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 305, 482
HpyF3I	CTNAG	4 cut(s)	563, 655, 674, 741
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	9 cut(s)	198, 205, 651, 760, 799, 837, 1273, 1415, 1436
Kzo9I	GATC	5 cut(s)	628, 1261, 1276, 1429, 1435
LmnI	GCTCC	3 cut(s)	126, 592, 1478
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	5 cut(s)	84, 145, 801, 1301, 1454
MabI	ACCWGGT	1 cut(s)	291
MaeI	CTAG	4 cut(s)	453, 860, 1217, 1373
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	4 cut(s)	549, 1096, 1135, 1359
MalI	GATC	5 cut(s)	630, 1263, 1278, 1431, 1437
MboI	GATC	5 cut(s)	628, 1261, 1276, 1429, 1435
MboII	GAAGA	8 cut(s)	124, 226, 420, 982, 1103, 1247, 1361, 1430
MfeI	CAATTG	1 cut(s)	320
MflI	RGATCY	1 cut(s)	1276
MhlI	GDGCHC	2 cut(s)	48, 310
MlsI	TGGCCA	2 cut(s)	93, 1019
MluNI	TGGCCA	2 cut(s)	93, 1019
MlyI	GAGTC	1 cut(s)	1333
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	8 cut(s)	225, 242, 290, 574, 672, 703, 1076, 1120
Mox20I	TGGCCA	2 cut(s)	93, 1019
MscI	TGGCCA	2 cut(s)	93, 1019
MseI	TTAA	5 cut(s)	5, 623, 666, 929, 938
Msp20I	TGGCCA	2 cut(s)	93, 1019
MspR9I	CCNGG	2 cut(s)	293, 602
MunI	CAATTG	1 cut(s)	320
MvaI	CCWGG	2 cut(s)	293, 602
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	3 cut(s)	142, 305, 482
NcoI	CCATGG	1 cut(s)	194
NdeI	CATATG	1 cut(s)	515
NdeII	GATC	5 cut(s)	628, 1261, 1276, 1429, 1435
NlaIII	CATG	9 cut(s)	198, 205, 651, 760, 799, 837, 1273, 1415, 1436
NlaIV	GGNNCC	6 cut(s)	213, 533, 588, 599, 1278, 1474
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	549
PagI	TCATGA	2 cut(s)	1269, 1432
PceI	AGGCCT	1 cut(s)	424
PfeI	GAWTC	7 cut(s)	121, 449, 567, 678, 1245, 1256, 1343
PflMI	CCANNNNNTGG	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	1 cut(s)	1332
PpsI	GAGTC	1 cut(s)	1332
PpuMI	RGGWCCY	2 cut(s)	532, 598
Psp5II	RGGWCCY	2 cut(s)	532, 598
Psp6I	CCWGG	2 cut(s)	291, 600
PspGI	CCWGG	2 cut(s)	291, 600
PspN4I	GGNNCC	6 cut(s)	213, 533, 588, 599, 1278, 1474
PspPI	GGNCC	3 cut(s)	411, 532, 598
PspPPI	RGGWCCY	2 cut(s)	532, 598
PstNI	CAGNNNCTG	1 cut(s)	953
PsuI	RGATCY	1 cut(s)	1276
RsaI	GTAC	7 cut(s)	358, 404, 641, 660, 734, 846, 858
RsaNI	GTAC	7 cut(s)	357, 403, 640, 659, 733, 845, 857
SaqAI	TTAA	5 cut(s)	5, 623, 666, 929, 938
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	5 cut(s)	628, 1261, 1276, 1429, 1435
Sau96I	GGNCC	3 cut(s)	411, 532, 598
SchI	GAGTC	1 cut(s)	1333
ScrFI	CCNGG	2 cut(s)	293, 602
SduI	GDGCHC	2 cut(s)	48, 310
SexAI	ACCWGGT	1 cut(s)	291
SfaNI	GCATC	5 cut(s)	84, 145, 801, 1301, 1454
SfcI	CTRYAG	2 cut(s)	783, 900
SinI	GGWCC	2 cut(s)	532, 598
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SseBI	AGGCCT	1 cut(s)	424
SsiI	CCGC	1 cut(s)	73
SspI	AATATT	1 cut(s)	1045
SspMI	CTAG	4 cut(s)	453, 860, 1217, 1373
StuI	AGGCCT	1 cut(s)	424
StyD4I	CCNGG	2 cut(s)	291, 600
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	5 cut(s)	365, 496, 631, 803, 1125
TatI	WGTACW	2 cut(s)	402, 856
TfiI	GAWTC	7 cut(s)	121, 449, 567, 678, 1245, 1256, 1343
Tru1I	TTAA	5 cut(s)	5, 623, 666, 929, 938
Tru9I	TTAA	5 cut(s)	5, 623, 666, 929, 938
TscAI	CASTG	2 cut(s)	53, 734
TseFI	GTSAC	1 cut(s)	549
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	6 cut(s)	190, 559, 1064, 1131, 1258, 1269
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	2 cut(s)	53, 734
Van91I	CCANNNNNTGG	1 cut(s)	516
VpaK11BI	GGWCC	2 cut(s)	532, 598
XagI	CCTNNNNNAGG	1 cut(s)	418
XapI	RAATTY	4 cut(s)	266, 872, 995, 1298
XbaI	TCTAGA	2 cut(s)	452, 1216
XcmI	CCANNNNNNNNNTGG	2 cut(s)	45, 1048
XspI	CTAG	4 cut(s)	453, 860, 1217, 1373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.