Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003678

Physical Location & Seq

Genomic Coordinates Forward (+)

26511664 .. 26519076

Gene Structure 7413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAGGCAAAGACAGAGTTCTGCAGTTTCATCATCAGCAAACACACACAGAACCCAAAACCCAATTCCTACAAAATCACAACAACAAAAAAAGGAAGGTCCACAATTCGATCTGCTAGCCTCACCCAAGAACATTTATCTCTTCTGCTTGGCCTTTCGAATGTTAAATGCTCTGTTGGTTCAGACCTATTTCAACCCAGATGAGCACTGGCAAGCTCTTGAAGTTGCTCACCGCATCACTTTTGGGTTTGGCCATTTGACGTGGGAGTGGAAGAAGGGGATTCGGAGCTACTTGCATCCTTTGCTCTTTGCTTTCCTTTACAAAGTGCTTGCCTTGTTAGGTCTTGATACCCCATGGTTCATGGTCAAGGCACCTCGGCTATTCCAGTCCCTATTCTCTGCATTTGGTGATTTATACCTGTACAAATTCTCTGTCATCCTCTTTGGCGACCAGGTTGCAAAATGGGCTCTTTTTTCCCAATTGACAAATTGGTTTATGTTTTTCTGTCTCACTCGTACATTATCGAATAGTCTGGAGACTGTTCTTACCATTGTGAGCTTGTACTACTGGCCCTCTATCAGGCCTTCTTCCAGCAAACTTCCGTTGGAATCTAGAAAGTGGGGTTTGCTTATTGCTGCATTAGCTTGTGCTATTCGACCAACAAGTGCCATCGTATGGCTTTATGTTGGGGTCCTTGAGCTATTTGTATCACGCGATAAACTCAGATTCATATTTTTGGAGGTGGCTCCTATTGGGGTCCTGGTGCTTGGGCTTACATTTTTAATAGATCGATTGATTTACGGCTCATGGGTCTTAGTACCTCTTAATTTCCTAAGATTCAATTTTCTTTCCTCTGGTGGAGATTATTATGGAACTCACAAGTGGCACTGGTACTTCACTCAGGGATTTTCTGTCATGGTATTTTCTTTTTTACCATTTTCTATAGCTGGCATCATGCAGTCGAAACAATGGAAGCTTTCTGGCCTTATTGCATGGGTTCTGGTACTTTATAGTGTACTAGGCCACAAAGAATTCAGGTTTGTTTTGCCTGTGCTTCCTATAGCTTTGATATTCTCTGGATACTCTTTAACTGCATTAAAAACATCAGTTTCTGGAAATGGTCAAAGGAAGAAATCGGCAGATTACCATAATAAATTCTCTGCAAAAATGCTGTTGGCCATCTTTTTCTTGCTCGCTACCAATATTCCAATGGCCTTGTATATGAGTTTGGTTCATCAGGTAGTTTGTTTGCTCTTTGATAACCACAAAAGCTGGGTAGTATATGTTTGGTGTTTGGCTAGCCAACTTAAACACTATTCTACTTCTATCATCAATGTTTTAATTATCTATTCGATGGATCACCTTCTTTGTATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031984 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

459

Amino Acids

52.82

Weight (kDa)

9.71

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_22	PF03901	45 - 417	3.6e-109	Alg9-like mannosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14850 AT5G14850 AT5G14850 AT5G14850 AT5G14850 AT5G14850
fragaria_vesca	FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660
malus_domestica	MD13G1260800.v1.1 MD16G1262500.v1.1
prunus_persica	Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1
pyrus_communis	pycom12494g00070 pycom16g23140
rosa_chinensis	RchiOBHm_Chr4g0404951
rosa_laevigata	RLG00000008894
rosa_multiflora	Rmu_sc0000358.1_g000019
rosa_roxburghii	Rroxscaffold_5G00349080
rosa_rugosa	Rorug01G0141900.1 Rorug04G0049800
rosa_samantha	Rh4AG126100 Rh4BG120300 Rh4CG134300 Rh4DG119800
rosa_wichuraiana	Rw4G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	370
AccB7I	CCANNNNNTGG	1 cut(s)	675
AccII	CGCG	1 cut(s)	714
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	1365
AcoI	YGGCCR	2 cut(s)	250, 1176
AcsI	RAATTY	3 cut(s)	425, 1031, 1154
AfaI	GTAC	7 cut(s)	422, 517, 563, 819, 893, 1005, 1017
AfiI	CCNNNNNNNGG	2 cut(s)	579, 675
AgsI	TTSAA	3 cut(s)	193, 221, 841
AjiI	CACGTC	1 cut(s)	261
AjnI	CCWGG	2 cut(s)	450, 759
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	9 cut(s)	215, 288, 558, 644, 700, 947, 976, 1064, 1272
AluI	AGCT	9 cut(s)	215, 288, 558, 644, 700, 947, 976, 1064, 1272
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	512, 530
AlwI	GGATC	1 cut(s)	1365
AlwNI	CAGNNNCTG	1 cut(s)	1112
AoxI	GGCC	8 cut(s)	150, 250, 569, 581, 982, 1021, 1176, 1212
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	3 cut(s)	425, 1031, 1154
ArsI	GACNNNNNNTTYG	2 cut(s)	417, 449
AspS9I	GGNCC	4 cut(s)	98, 570, 691, 757
AsuHPI	GGTGA	4 cut(s)	114, 221, 419, 1352
AsuII	TTCGAA	1 cut(s)	157
AsuNHI	GCTAGC	2 cut(s)	115, 1298
AvaII	GGWCC	3 cut(s)	98, 691, 757
BalI	TGGCCA	2 cut(s)	252, 1178
BanI	GGYRCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	3 cut(s)	677, 1187, 1348
BceAI	ACGGC	1 cut(s)	817
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	2 cut(s)	452, 761
BciVI	GTATCC	1 cut(s)	1073
BcoDI	GTCTC	2 cut(s)	512, 530
BfaI	CTAG	4 cut(s)	116, 612, 1019, 1299
BfmI	CTRYAG	3 cut(s)	21, 942, 1059
BfuI	GTATCC	1 cut(s)	1073
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme1390I	CCNGG	2 cut(s)	452, 761
Bme18I	GGWCC	3 cut(s)	98, 691, 757
BmgBI	CACGTC	1 cut(s)	261
BmgT120I	GGNCC	4 cut(s)	98, 570, 691, 757
BmiI	GGNNCC	4 cut(s)	372, 692, 747, 758
BmrFI	CCNGG	2 cut(s)	452, 761
BmsI	GCATC	3 cut(s)	243, 304, 960
BmtI	GCTAGC	2 cut(s)	119, 1302
BpmI	CTGGAG	1 cut(s)	554
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	716
Bsa29I	ATCGAT	1 cut(s)	790
BsaJI	CCNNGG	2 cut(s)	353, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	579, 675
Bse1I	ACTGG	4 cut(s)	212, 385, 572, 893
BseBI	CCWGG	2 cut(s)	452, 761
BseCI	ATCGAT	1 cut(s)	790
BseDI	CCNNGG	2 cut(s)	353, 374
BseGI	GGATG	2 cut(s)	295, 435
BseLI	CCNNNNNNNGG	2 cut(s)	579, 675
BseMII	CTCAG	2 cut(s)	736, 914
BseNI	ACTGG	4 cut(s)	212, 385, 572, 893
BseXI	GCAGC	1 cut(s)	622
BseYI	CCCAGC	1 cut(s)	1272
Bsh1236I	CGCG	1 cut(s)	714
BshFI	GGCC	8 cut(s)	152, 252, 571, 583, 984, 1023, 1178, 1214
BshNI	GGYRCC	1 cut(s)	370
BshVI	ATCGAT	1 cut(s)	790
BsiHKAI	GWGCWC	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	579, 675
BsmAI	GTCTC	2 cut(s)	512, 530
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	8 cut(s)	152, 252, 571, 583, 984, 1023, 1178, 1214
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	207, 469
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	109, 787, 1357
Bsp19I	CCATGG	1 cut(s)	353
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	8 cut(s)	152, 252, 571, 583, 984, 1023, 1178, 1214
BspCNI	CTCAG	2 cut(s)	735, 913
BspDI	ATCGAT	1 cut(s)	790
BspFNI	CGCG	1 cut(s)	714
BspLI	GGNNCC	4 cut(s)	372, 692, 747, 758
BspMAI	CTGCAG	1 cut(s)	25
BspOI	GCTAGC	2 cut(s)	119, 1302
BspPI	GGATC	1 cut(s)	1365
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	4 cut(s)	212, 385, 572, 893
BssECI	CCNNGG	2 cut(s)	353, 374
BssMI	GATC	3 cut(s)	109, 787, 1357
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	2 cut(s)	452, 761
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstAUI	TGTACA	1 cut(s)	420
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	6 cut(s)	117, 213, 330, 949, 1194, 1300
BstDEI	CTNAG	4 cut(s)	722, 814, 833, 900
BstDSI	CCRYGG	1 cut(s)	353
BstENI	CCTNNNNNAGG	1 cut(s)	577
BstF5I	GGATG	2 cut(s)	295, 435
BstFNI	CGCG	1 cut(s)	714
BstKTI	GATC	3 cut(s)	112, 790, 1360
BstMAI	GTCTC	2 cut(s)	512, 530
BstMBI	GATC	3 cut(s)	109, 787, 1357
BstMWI	GCNNNNNNNGC	3 cut(s)	301, 464, 641
BstNI	CCWGG	2 cut(s)	452, 761
BstSCI	CCNGG	2 cut(s)	450, 759
BstSFI	CTRYAG	3 cut(s)	21, 942, 1059
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	1 cut(s)	622
Bsu15I	ATCGAT	1 cut(s)	790
BsuI	GTATCC	1 cut(s)	1073
BsuRI	GGCC	8 cut(s)	152, 252, 571, 583, 984, 1023, 1178, 1214
BsuTUI	ATCGAT	1 cut(s)	790
BtgI	CCRYGG	1 cut(s)	353
BtrI	CACGTC	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	295, 435
BtsIMutI	CAGTG	2 cut(s)	205, 886
Cac8I	GCNNGC	6 cut(s)	117, 213, 330, 949, 1194, 1300
CaiI	CAGNNNCTG	1 cut(s)	1112
Cfr13I	GGNCC	4 cut(s)	98, 570, 691, 757
ClaI	ATCGAT	1 cut(s)	790
CsiI	ACCWGGT	1 cut(s)	450
Csp6I	GTAC	7 cut(s)	421, 516, 562, 818, 892, 1004, 1016
CviAII	CATG	6 cut(s)	354, 361, 807, 916, 955, 993
CviQI	GTAC	7 cut(s)	421, 516, 562, 818, 892, 1004, 1016
DdeI	CTNAG	4 cut(s)	722, 814, 833, 900
DpnI	GATC	3 cut(s)	111, 789, 1359
DpnII	GATC	3 cut(s)	109, 787, 1357
EaeI	YGGCCR	2 cut(s)	250, 1176
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	353
Eco147I	AGGCCT	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	469
Eco47I	GGWCC	3 cut(s)	98, 691, 757
EcoNI	CCTNNNNNAGG	1 cut(s)	577
EcoO109I	RGGNCCY	2 cut(s)	691, 757
EcoRI	GAATTC	1 cut(s)	1031
EcoRII	CCWGG	2 cut(s)	450, 759
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	6 cut(s)	357, 364, 810, 919, 958, 996
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	6 cut(s)	353, 360, 806, 915, 954, 992
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	2 cut(s)	282, 422
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	4 cut(s)	116, 612, 1019, 1299
GluI	GCNGC	1 cut(s)	636
GsaI	CCCAGC	1 cut(s)	1276
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	8 cut(s)	152, 252, 571, 583, 984, 1023, 1178, 1214
Hin1II	CATG	6 cut(s)	357, 364, 810, 919, 958, 996
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	4 cut(s)	280, 608, 726, 837
HphI	GGTGA	4 cut(s)	114, 221, 419, 1352
Hpy166II	GTNNAC	2 cut(s)	101, 1016
Hpy188I	TCNGA	3 cut(s)	183, 285, 725
Hpy188III	TCNNGA	6 cut(s)	218, 344, 533, 612, 1077, 1113
Hpy8I	GTNNAC	2 cut(s)	101, 1016
HpyAV	CCTTC	4 cut(s)	89, 268, 594, 1373
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	9 cut(s)	23, 295, 401, 458, 638, 958, 992, 1094, 1163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	301, 464, 641
HpyF3I	CTNAG	4 cut(s)	722, 814, 833, 900
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	6 cut(s)	357, 364, 810, 919, 958, 996
Kzo9I	GATC	3 cut(s)	109, 787, 1357
LmnI	GCTCC	2 cut(s)	285, 751
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	3 cut(s)	243, 304, 960
MabI	ACCWGGT	1 cut(s)	450
MaeI	CTAG	4 cut(s)	116, 612, 1019, 1299
MaeII	ACGT	1 cut(s)	260
MalI	GATC	3 cut(s)	111, 789, 1359
MboI	GATC	3 cut(s)	109, 787, 1357
MboII	GAAGA	4 cut(s)	133, 283, 579, 1141
MfeI	CAATTG	1 cut(s)	479
MhlI	GDGCHC	2 cut(s)	207, 469
MlsI	TGGCCA	2 cut(s)	252, 1178
MluNI	TGGCCA	2 cut(s)	252, 1178
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	7 cut(s)	130, 384, 449, 583, 733, 831, 862
Mox20I	TGGCCA	2 cut(s)	252, 1178
MscI	TGGCCA	2 cut(s)	252, 1178
MseI	TTAA	8 cut(s)	164, 782, 825, 1088, 1097, 1308, 1340, 1378
Msp20I	TGGCCA	2 cut(s)	252, 1178
MspR9I	CCNGG	2 cut(s)	452, 761
MunI	CAATTG	1 cut(s)	479
MvaI	CCWGG	2 cut(s)	452, 761
MvnI	CGCG	1 cut(s)	714
MwoI	GCNNNNNNNGC	3 cut(s)	301, 464, 641
NcoI	CCATGG	1 cut(s)	353
NdeII	GATC	3 cut(s)	109, 787, 1357
NheI	GCTAGC	2 cut(s)	115, 1298
NlaIII	CATG	6 cut(s)	357, 364, 810, 919, 958, 996
NlaIV	GGNNCC	4 cut(s)	372, 692, 747, 758
NmeAIII	GCCGAG	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	583
PfeI	GAWTC	4 cut(s)	280, 608, 726, 837
PflMI	CCANNNNNTGG	1 cut(s)	675
PkrI	GCNGC	1 cut(s)	637
PpuMI	RGGWCCY	2 cut(s)	691, 757
Psp5II	RGGWCCY	2 cut(s)	691, 757
Psp6I	CCWGG	2 cut(s)	450, 759
PspFI	CCCAGC	1 cut(s)	1272
PspGI	CCWGG	2 cut(s)	450, 759
PspN4I	GGNNCC	4 cut(s)	372, 692, 747, 758
PspPI	GGNCC	4 cut(s)	98, 570, 691, 757
PspPPI	RGGWCCY	2 cut(s)	691, 757
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	1112
RsaI	GTAC	7 cut(s)	422, 517, 563, 819, 893, 1005, 1017
RsaNI	GTAC	7 cut(s)	421, 516, 562, 818, 892, 1004, 1016
SaqAI	TTAA	8 cut(s)	164, 782, 825, 1088, 1097, 1308, 1340, 1378
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	3 cut(s)	109, 787, 1357
Sau96I	GGNCC	4 cut(s)	98, 570, 691, 757
ScrFI	CCNGG	2 cut(s)	452, 761
SduI	GDGCHC	2 cut(s)	207, 469
SexAI	ACCWGGT	1 cut(s)	450
SfaNI	GCATC	3 cut(s)	243, 304, 960
SfcI	CTRYAG	3 cut(s)	21, 942, 1059
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	3 cut(s)	98, 691, 757
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SseBI	AGGCCT	1 cut(s)	583
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	1204
SspMI	CTAG	4 cut(s)	116, 612, 1019, 1299
StuI	AGGCCT	1 cut(s)	583
StyD4I	CCNGG	2 cut(s)	450, 759
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	7 cut(s)	108, 157, 524, 655, 790, 962, 1352
TatI	WGTACW	3 cut(s)	420, 561, 1015
TfiI	GAWTC	4 cut(s)	280, 608, 726, 837
Tru1I	TTAA	8 cut(s)	164, 782, 825, 1088, 1097, 1308, 1340, 1378
Tru9I	TTAA	8 cut(s)	164, 782, 825, 1088, 1097, 1308, 1340, 1378
TscAI	CASTG	2 cut(s)	212, 893
TseI	GCWGC	1 cut(s)	635
TspDTI	ATGAA	4 cut(s)	18, 349, 718, 1223
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	2 cut(s)	212, 893
Van91I	CCANNNNNTGG	1 cut(s)	675
VpaK11BI	GGWCC	3 cut(s)	98, 691, 757
XagI	CCTNNNNNAGG	1 cut(s)	577
XapI	RAATTY	3 cut(s)	425, 1031, 1154
XbaI	TCTAGA	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	2 cut(s)	204, 1207
XspI	CTAG	4 cut(s)	116, 612, 1019, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.