Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003678

Physical Location & Seq

Genomic Coordinates Reverse (-)

31964587 .. 31967262

Gene Structure 2676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1260800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGATTTCCTTCTGCTTAACTGCACCCTCAAATGGCACCACACTTCTGCTGCATAAAGCCAAGGCTCCTCGGCTGTTTCAGTCCTTTTTTGCTGCATTTGGTGATTTATACTTGTATAAGCTCTCTGTCATCCTCTTTGGTGACTGCGTTGCTAAATGGGCTGTATCCTTTTGTAGGAGGGGTTCTTTACTTCTGGTCCTGGTGCTTGGTCTTACATTTTTATTGGATTGTATGATGTACGGCTCATGGGTCTTTGTACCTCTTAATTTTCTAAGATTCAATTTTCTTTCTGCTGGTGGAGACTATTATGGGACTCACAAGTGGTACTGGTACTTCACTCAAGGATTTACAGTCATAATATTCTCTTTCTTACCATTTTCTGTTGCTGGAATCATGCAATCCAAACATTGGAAGCTTTCTGGCTTTATTGCATGGGTTTTAGGACTTTATAGTGTGCTAGGCCACAAAGAATTCAGGTTTGTTCTGCCCGTACTTCCTATAGCTTTGATGTTCTCTGGGCATTCCTTAGCTGCATTAAGAACATCGGTTTCTGCAAATGGTAAAGGAAAAGAATCATCGAATATCAATAGCAAATGCCCTGCAAAAATGCAGTTGGCCATCTTTTTCTTGCTCTCGACCAATCTTCCAATGGCCCTGTATATGAGTTTGGTTCATCAGAGAGGAACTGAGGATGTTACATACTATCTATCCAAAGAAGTGCTTCACGGAAAAGTGACAAAGGTACTTTTTCTGATGCCTTGCCACGCTACACCTTACTACTCTATGGTTCACCGCAACCTTCCGATGAGATTCCTAGACTGCTCACCAAGTGAAGAAAAAGGAAACCCAGATGAATCAGACCAATTCATGATGGATCCTGCTGGTTTTACGTCAGAACTTGCAAAGAATTGGTCTTTTCCTAGTCACATTGTATTATTTGATTCGGAAGAAAGACAGTTGAGGGATTTTCTGATCTCACATTCTTTCAGAGAGTTGCATGCTACAACTCATAATTTTACTGCTGCAATAAATAGGTTTTTCCATGCTCACTTCAAAGTGGACCGCGATCTTCAAGCATCAGTTATTGTGTATGGTTTGACAGGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031984 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

370

Amino Acids

41.88

Weight (kDa)

8.96

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_22	PF03901	61 - 264	4.8e-47	Alg9-like mannosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14850 AT5G14850 AT5G14850 AT5G14850 AT5G14850 AT5G14850
fragaria_vesca	FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660
malus_domestica	MD13G1260800.v1.1 MD16G1262500.v1.1
prunus_persica	Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1
pyrus_communis	pycom12494g00070 pycom16g23140
rosa_chinensis	RchiOBHm_Chr4g0404951
rosa_laevigata	RLG00000008894
rosa_multiflora	Rmu_sc0000358.1_g000019
rosa_roxburghii	Rroxscaffold_5G00349080
rosa_rugosa	Rorug01G0141900.1 Rorug04G0049800
rosa_samantha	Rh4AG126100 Rh4BG120300 Rh4CG134300 Rh4DG119800
rosa_wichuraiana	Rw4G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	408
AccII	CGCG	1 cut(s)	1065
AciI	CCGC	2 cut(s)	793, 1063
AclWI	GGATC	2 cut(s)	869, 882
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	470
AdeI	CACNNNGTG	1 cut(s)	830
AfaI	GTAC	6 cut(s)	239, 258, 326, 332, 492, 744
AfiI	CCNNNNNNNGG	3 cut(s)	32, 174, 408
AgsI	TTSAA	3 cut(s)	280, 1054, 1073
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	4 cut(s)	121, 415, 503, 530
AluI	AGCT	4 cut(s)	121, 415, 503, 530
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	869, 882
AoxI	GGCC	3 cut(s)	460, 615, 651
ApeKI	GCWGC	4 cut(s)	49, 92, 530, 1022
ApoI	RAATTY	1 cut(s)	470
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
Asp700I	GAANNNNTTC	1 cut(s)	720
AspS9I	GGNCC	3 cut(s)	196, 652, 1060
AsuHPI	GGTGA	4 cut(s)	113, 152, 782, 816
AvaII	GGWCC	2 cut(s)	196, 1060
BalI	TGGCCA	1 cut(s)	617
BamHI	GGATCC	1 cut(s)	874
BanI	GGYRCC	1 cut(s)	35
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbvI	GCAGC	4 cut(s)	36, 79, 517, 1009
BccI	CCATC	2 cut(s)	626, 865
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	3 cut(s)	458, 815, 921
BfmI	CTRYAG	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	4 cut(s)	50, 93, 531, 1023
BlsI	GCNGC	4 cut(s)	51, 94, 532, 1024
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	2 cut(s)	196, 1060
BmgT120I	GGNCC	3 cut(s)	196, 652, 1060
BmiI	GGNNCC	3 cut(s)	37, 66, 876
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	744, 1085
Bpu10I	CCTNAGC	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	60, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 174, 408
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	60, 68
BseGI	GGATG	2 cut(s)	129, 697
BseLI	CCNNNNNNNGG	3 cut(s)	32, 174, 408
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	4 cut(s)	36, 79, 517, 1009
BsgI	GTGCAG	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	1065
BshFI	GGCC	3 cut(s)	462, 617, 653
BshNI	GGYRCC	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	3 cut(s)	32, 174, 408
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	3 cut(s)	462, 617, 653
Bsp143I	GATC	3 cut(s)	874, 972, 1066
BspACI	CCGC	2 cut(s)	793, 1063
BspANI	GGCC	3 cut(s)	462, 617, 653
BspCNI	CTCAG	1 cut(s)	679
BspFNI	CGCG	1 cut(s)	1065
BspHI	TCATGA	1 cut(s)	867
BspLI	GGNNCC	3 cut(s)	37, 66, 876
BspPI	GGATC	2 cut(s)	869, 882
BspT107I	GGYRCC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	60, 68
BssMI	GATC	3 cut(s)	874, 972, 1066
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	352, 957
BstC8I	GCNNGC	1 cut(s)	999
BstDEI	CTNAG	3 cut(s)	272, 526, 687
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	129, 697
BstFNI	CGCG	1 cut(s)	1065
BstKTI	GATC	3 cut(s)	877, 975, 1069
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	3 cut(s)	874, 972, 1066
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	1001
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	1065
BstV1I	GCAGC	4 cut(s)	36, 79, 517, 1009
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	462, 617, 653
BtsCI	GGATG	2 cut(s)	129, 697
Cac8I	GCNNGC	1 cut(s)	999
CciI	TCATGA	1 cut(s)	867
Cfr13I	GGNCC	3 cut(s)	196, 652, 1060
Csp6I	GTAC	6 cut(s)	238, 257, 325, 331, 491, 743
CviAII	CATG	6 cut(s)	246, 394, 432, 868, 998, 1043
CviQI	GTAC	6 cut(s)	238, 257, 325, 331, 491, 743
DdeI	CTNAG	3 cut(s)	272, 526, 687
DpnI	GATC	3 cut(s)	876, 974, 1068
DpnII	GATC	3 cut(s)	874, 972, 1066
DraIII	CACNNNGTG	1 cut(s)	830
EaeI	YGGCCR	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	196, 1060
EcoNI	CCTNNNNNAGG	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	6 cut(s)	249, 397, 435, 871, 1001, 1046
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	6 cut(s)	245, 393, 431, 867, 997, 1042
Fnu4HI	GCNGC	4 cut(s)	50, 93, 531, 1023
FokI	GGATG	2 cut(s)	116, 704
Fsp4HI	GCNGC	4 cut(s)	50, 93, 531, 1023
FspBI	CTAG	3 cut(s)	458, 815, 921
GluI	GCNGC	4 cut(s)	50, 93, 531, 1023
HaeIII	GGCC	3 cut(s)	462, 617, 653
Hin1II	CATG	6 cut(s)	249, 397, 435, 871, 1001, 1046
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	7 cut(s)	276, 313, 390, 572, 810, 854, 941
HphI	GGTGA	4 cut(s)	113, 152, 782, 816
Hpy166II	GTNNAC	2 cut(s)	790, 1060
Hpy188I	TCNGA	8 cut(s)	678, 753, 804, 859, 895, 946, 972, 989
Hpy188III	TCNNGA	2 cut(s)	634, 868
Hpy8I	GTNNAC	2 cut(s)	790, 1060
HpyAV	CCTTC	2 cut(s)	19, 809
HpyCH4III	ACNGT	2 cut(s)	352, 957
HpyCH4IV	ACGT	1 cut(s)	890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	272, 526, 687
HpySE526I	ACGT	1 cut(s)	890
Hsp92II	CATG	6 cut(s)	249, 397, 435, 871, 1001, 1046
Kzo9I	GATC	3 cut(s)	874, 972, 1066
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	4 cut(s)	36, 79, 517, 1009
LweI	GCATC	2 cut(s)	744, 1085
MaeI	CTAG	3 cut(s)	458, 815, 921
MaeII	ACGT	1 cut(s)	890
MaeIII	GTNAC	4 cut(s)	140, 694, 733, 923
MalI	GATC	3 cut(s)	876, 974, 1068
MboI	GATC	3 cut(s)	874, 972, 1066
MboII	GAAGA	4 cut(s)	635, 845, 959, 1061
MflI	RGATCY	1 cut(s)	874
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	6 cut(s)	265, 280, 470, 863, 907, 1012
MluNI	TGGCCA	1 cut(s)	617
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	8 cut(s)	37, 78, 143, 171, 270, 674, 682, 954
Mox20I	TGGCCA	1 cut(s)	617
MroXI	GAANNNNTTC	1 cut(s)	720
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	3 cut(s)	17, 264, 536
Msp20I	TGGCCA	1 cut(s)	617
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	3 cut(s)	874, 972, 1066
NlaIII	CATG	6 cut(s)	249, 397, 435, 871, 1001, 1046
NlaIV	GGNNCC	3 cut(s)	37, 66, 876
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	3 cut(s)	140, 733, 923
NspI	RCATGY	1 cut(s)	1001
PaeI	GCATGC	1 cut(s)	1001
PagI	TCATGA	1 cut(s)	867
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	6 cut(s)	276, 390, 572, 810, 854, 941
PflMI	CCANNNNNTGG	1 cut(s)	408
PkrI	GCNGC	4 cut(s)	51, 94, 532, 1024
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	3 cut(s)	37, 66, 876
PspPI	GGNCC	3 cut(s)	196, 652, 1060
PsrI	GAACNNNNNNTAC	2 cut(s)	166, 198
PsuI	RGATCY	1 cut(s)	874
RsaI	GTAC	6 cut(s)	239, 258, 326, 332, 492, 744
RsaNI	GTAC	6 cut(s)	238, 257, 325, 331, 491, 743
SaqAI	TTAA	3 cut(s)	17, 264, 536
SatI	GCNGC	4 cut(s)	50, 93, 531, 1023
Sau3AI	GATC	3 cut(s)	874, 972, 1066
Sau96I	GGNCC	3 cut(s)	196, 652, 1060
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	200
SfaNI	GCATC	2 cut(s)	744, 1085
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	2 cut(s)	196, 1060
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
SphI	GCATGC	1 cut(s)	1001
Sse9I	AATT	6 cut(s)	265, 280, 470, 863, 907, 1012
SsiI	CCGC	2 cut(s)	793, 1063
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	3 cut(s)	458, 815, 921
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	352, 957
TaiI	ACGT	1 cut(s)	893
TaqI	TCGA	2 cut(s)	578, 635
TasI	AATT	6 cut(s)	265, 280, 470, 863, 907, 1012
TfiI	GAWTC	6 cut(s)	276, 390, 572, 810, 854, 941
Tru1I	TTAA	3 cut(s)	17, 264, 536
Tru9I	TTAA	3 cut(s)	17, 264, 536
TseFI	GTSAC	3 cut(s)	140, 733, 923
TseI	GCWGC	4 cut(s)	49, 92, 530, 1022
Tsp45I	GTSAC	3 cut(s)	140, 733, 923
TspDTI	ATGAA	3 cut(s)	662, 856, 867
TspGWI	ACGGA	1 cut(s)	741
Van91I	CCANNNNNTGG	1 cut(s)	408
VpaK11BI	GGWCC	2 cut(s)	196, 1060
XagI	CCTNNNNNAGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	1001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	3 cut(s)	458, 815, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.