MD16G1262500.v1.1

GPI mannosyltransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
32822606 .. 32827333
4728 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1262500.v1.1.491

Sequence Viewer

Length: 1611 bp
ATGAGGCAAAGGCAGAGTGCTGCTGTCTCACCAGCAGCAGAATCAGTCAAAACCGAAAACCCAGTTCCTACGAAATTAGGTCCACAGCAAAAGGAATCCCGGCCAGGTGATTTTCTAGGCTCCTCCAGGAAGGTCTTTGCACTCTGTTTGGCCTTTCGAATAGCAAATGCTCTGTTGATTCAGACCTATTTTAACCCTGATGAACACTGGCAAGCCCTTGAAGTTGCACATCGCATCACTTTTGGGTATGGCCATTTGACGTGGGAGTGGAAGAAGGGGATTCGTAGCTATTTGCATCCTTTTCTCTTTGCCTTCCTTTACAAAGCTCTTGCAGTGTTGGGTCTTGATACCCCATGGCTCATGGTCAAGGCTCCGCGGCTATTTCAGTCTTGTTTTGCTGCCTTTGGTGATCTATACTTGTATAAACTCTCTGTCATCCTCTTTGATGACTGCGTTGCTAAATGGGCTCTGTTCTCACAATTGACAAATTGGTTTATGTTTTACTGCATCACTCGTACATTATCAAATAGTTTGGAGACTGTTCTTACCCTTGTGAGCCTGTACTACTGGCCCTGTATGAGGGCTTCTTCCAGCAAACTTCCCTTGGAATCAAGGAAGTGGGGTTTGATTATTGCCGCATTAGCTTGTGCTATCAGACCAACAAGTGCTATCATATGGCTGTATGTTGGCCTTCTTGAGCTATTTTTGACATGTGATAAACTGAGATTCATTTTTCTGGAAGTGGCTCCTATGGGGGTCCTGGTGCTTGGTATTACATTTTTATTGGATCGTTTGATGTACGGCTCATGGGTCTTTGTACCTCTTAATTTTATAAGATTCAATTTTCTCTCTGCTGGTGGAGACTATTATGGGACTCATAAGTGGCACTGGTACTTCACTCAGGGATTTACAGTCATGATATTCTCTTTCTTACCATTTTCTGTTGCTGGAATCATACAATCCAAAAATTGGAAACTTTCTGGCCTTATTGCATGGGTTTTAGGACTTTATAGTGTGCTAGGCCACAAAGAATTCAGGTTTGTTCTGCCTGTACTTCCTATAGCTTTGATATTCTCTGGACATTCCTTAGCTGCATTAAGAACATCGGTTTCTGCATATGGTAGCAAATTCCCTGCAAAAATGCAGTTGGCCATCTTTTTCTTGCTCGCTACCAATATTCCAGTGGCCCTATATATGAGTTTGGTTCATCAGAGAGGAACCGAGGATGTTACTTACTATCTATCCAAAGAAGTGCTTCATGGAAAAGTGACAAATATACTTTTTCTGATGCCTTGCCACGCTACACCTTACTACTCTACGGTGCACCGTGACCTTCCGATGAGATTCCTAGACTGCTCACCAAGTGAAGAAAAAGGAATCCCAGATGAATCTGACCAATTCATGATGGATCCTGTTAGTTTTACATCAGAACTTGCAAAGAATTGGTCTTTACCTAGTCACATTGTAGTATTTGATTCGGAAGAAAAACAGTTGAGGGCTTTTCTGATTTCACATTCTTTCAAAAAGATAAAAAGGTTTTTCCATGCGCACTTCAAAGTGGACCGTGATCTGCAAGCGTCAGTTGTTGTGTACGGTTTGACAGGCGACTGA

Protein Analysis

537

Amino Acids

61.18

Weight (kDa)

9.18

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_22 PF03901 45 - 442 9.9e-113 Alg9-like mannosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 833
Acc16I TGCGCA 1 cut(s) 1548
AccB7I CCANNNNNTGG 1 cut(s) 969
AccII CGCG 1 cut(s) 376
AciI CCGC 3 cut(s) 374, 376, 636
AclWI GGATC 3 cut(s) 795, 1403, 1416
AcoI YGGCCR 3 cut(s) 101, 250, 1149
AcsI RAATTY 2 cut(s) 1031, 1127
AdeI CACNNNGTG 1 cut(s) 1364
AfaI GTAC 7 cut(s) 517, 563, 800, 819, 893, 1053, 1592
AfiI CCNNNNNNNGG 2 cut(s) 579, 969
AflIII ACRYGT 1 cut(s) 710
AgsI TTSAA 4 cut(s) 221, 841, 1522, 1555
AjiI CACGTC 1 cut(s) 261
AjnI CCWGG 3 cut(s) 103, 125, 759
AluBI AGCT 6 cut(s) 288, 326, 644, 700, 1064, 1091
AluI AGCT 6 cut(s) 288, 326, 644, 700, 1064, 1091
Alw21I GWGCWC 1 cut(s) 1326
Alw26I GTCTC 3 cut(s) 31, 530, 855
Alw44I GTGCAC 1 cut(s) 1322
AlwI GGATC 3 cut(s) 795, 1403, 1416
AoxI GGCC 9 cut(s) 101, 150, 250, 569, 688, 982, 1021, 1149, 1185
ApaLI GTGCAC 1 cut(s) 1322
ApeKI GCWGC 4 cut(s) 20, 35, 398, 1091
ApoI RAATTY 2 cut(s) 1031, 1127
ArsI GACNNNNNNTTYG 2 cut(s) 1430, 1462
Asp700I GAANNNNTTC 1 cut(s) 1254
AspLEI GCGC 1 cut(s) 1549
AspS9I GGNCC 5 cut(s) 80, 570, 757, 1186, 1561
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 4 cut(s) 21, 119, 419, 1350
AsuII TTCGAA 1 cut(s) 157
AvaII GGWCC 3 cut(s) 80, 757, 1561
BaeGI GKGCMC 1 cut(s) 1326
BalI TGGCCA 2 cut(s) 252, 1151
BamHI GGATCC 1 cut(s) 1408
BanII GRGCYC 1 cut(s) 469
BarI GAAGNNNNNNTAC 2 cut(s) 568, 600
Bbv12I GWGCWC 1 cut(s) 1326
BbvI GCAGC 4 cut(s) 7, 47, 385, 1078
BccI CCATC 2 cut(s) 1160, 1399
BceAI ACGGC 1 cut(s) 817
BciT130I CCWGG 3 cut(s) 105, 127, 761
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 3 cut(s) 31, 530, 855
BfaI CTAG 4 cut(s) 116, 1019, 1349, 1455
BfmI CTRYAG 1 cut(s) 1059
BisI GCNGC 6 cut(s) 21, 36, 377, 399, 636, 1092
BlsI GCNGC 6 cut(s) 22, 37, 378, 400, 637, 1093
Bme1390I CCNGG 4 cut(s) 100, 105, 127, 761
Bme18I GGWCC 3 cut(s) 80, 757, 1561
BmgBI CACGTC 1 cut(s) 261
BmgT120I GGNCC 5 cut(s) 80, 570, 757, 1186, 1561
BmiI GGNNCC 6 cut(s) 121, 372, 747, 758, 1219, 1410
BmrFI CCNGG 4 cut(s) 100, 105, 127, 761
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 4 cut(s) 243, 304, 516, 1278
BmuI ACTGGG 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 1087
Bpu14I TTCGAA 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 716
BpuMI CCSGG 1 cut(s) 100
BsaJI CCNNGG 4 cut(s) 353, 374, 603, 1221
Bsc4I CCNNNNNNNGG 2 cut(s) 579, 969
Bse1I ACTGG 5 cut(s) 62, 212, 572, 893, 1181
BseBI CCWGG 3 cut(s) 105, 127, 761
BseDI CCNNGG 4 cut(s) 353, 374, 603, 1221
BseGI GGATG 3 cut(s) 295, 435, 1231
BseLI CCNNNNNNNGG 2 cut(s) 579, 969
BseMII CTCAG 2 cut(s) 713, 914
BseNI ACTGG 5 cut(s) 62, 212, 572, 893, 1181
BseRI GAGGAG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 1326
BseXI GCAGC 4 cut(s) 7, 47, 385, 1078
Bsh1236I CGCG 1 cut(s) 376
BshFI GGCC 9 cut(s) 103, 152, 252, 571, 690, 984, 1023, 1151, 1187
BsiHKAI GWGCWC 1 cut(s) 1326
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 886
BslI CCNNNNNNNGG 2 cut(s) 579, 969
BsmAI GTCTC 3 cut(s) 31, 530, 855
BsmFI GGGAC 1 cut(s) 886
BsnI GGCC 9 cut(s) 103, 152, 252, 571, 690, 984, 1023, 1151, 1187
Bsp119I TTCGAA 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 469, 1326
Bsp143I GATC 4 cut(s) 409, 787, 1408, 1567
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 3 cut(s) 374, 376, 636
BspANI GGCC 9 cut(s) 103, 152, 252, 571, 690, 984, 1023, 1151, 1187
BspCNI CTCAG 2 cut(s) 714, 913
BspFNI CGCG 1 cut(s) 376
BspHI TCATGA 2 cut(s) 915, 1401
BspLI GGNNCC 6 cut(s) 121, 372, 747, 758, 1219, 1410
BspPI GGATC 3 cut(s) 795, 1403, 1416
BspT104I TTCGAA 1 cut(s) 157
BsrI ACTGG 5 cut(s) 62, 212, 572, 893, 1181
BssECI CCNNGG 4 cut(s) 353, 374, 603, 1221
BssMI GATC 4 cut(s) 409, 787, 1408, 1567
BssT1I CCWWGG 2 cut(s) 353, 603
Bst2UI CCWGG 3 cut(s) 105, 127, 761
Bst4CI ACNGT 7 cut(s) 541, 913, 1321, 1328, 1491, 1565, 1595
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 3 cut(s) 213, 1167, 1575
BstDEI CTNAG 3 cut(s) 722, 900, 1087
BstDSI CCRYGG 2 cut(s) 353, 374
BstENI CCTNNNNNAGG 1 cut(s) 577
BstF5I GGATG 3 cut(s) 295, 435, 1231
BstFNI CGCG 1 cut(s) 376
BstHHI GCGC 1 cut(s) 1549
BstKTI GATC 4 cut(s) 412, 790, 1411, 1570
BstMAI GTCTC 3 cut(s) 31, 530, 855
BstMBI GATC 4 cut(s) 409, 787, 1408, 1567
BstMWI GCNNNNNNNGC 2 cut(s) 464, 641
BstNI CCWGG 3 cut(s) 105, 127, 761
BstNSI RCATGY 1 cut(s) 714
BstSCI CCNGG 4 cut(s) 98, 103, 125, 759
BstSFI CTRYAG 1 cut(s) 1059
BstSLI GKGCMC 1 cut(s) 1326
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 4 cut(s) 7, 47, 385, 1078
BstX2I RGATCY 1 cut(s) 1408
BstYI RGATCY 1 cut(s) 1408
BsuRI GGCC 9 cut(s) 103, 152, 252, 571, 690, 984, 1023, 1151, 1187
BtgI CCRYGG 2 cut(s) 353, 374
BtgZI GCGATG 1 cut(s) 215
BtrI CACGTC 1 cut(s) 261
BtsCI GGATG 3 cut(s) 295, 435, 1231
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 4 cut(s) 205, 339, 886, 1188
Cac8I GCNNGC 3 cut(s) 213, 1167, 1575
CciI TCATGA 2 cut(s) 915, 1401
CfoI GCGC 1 cut(s) 1549
Cfr13I GGNCC 5 cut(s) 80, 570, 757, 1186, 1561
Cfr42I CCGCGG 1 cut(s) 377
CseI GACGC 1 cut(s) 1566
Csp6I GTAC 7 cut(s) 516, 562, 799, 818, 892, 1052, 1591
CviAII CATG 9 cut(s) 354, 361, 711, 807, 916, 993, 1259, 1402, 1544
CviQI GTAC 7 cut(s) 516, 562, 799, 818, 892, 1052, 1591
DdeI CTNAG 3 cut(s) 722, 900, 1087
DpnI GATC 4 cut(s) 411, 789, 1410, 1569
DpnII GATC 4 cut(s) 409, 787, 1408, 1567
DraIII CACNNNGTG 1 cut(s) 1364
EaeI YGGCCR 3 cut(s) 101, 250, 1149
Eco130I CCWWGG 2 cut(s) 353, 603
Eco24I GRGCYC 1 cut(s) 469
Eco47I GGWCC 3 cut(s) 80, 757, 1561
EcoNI CCTNNNNNAGG 1 cut(s) 577
EcoO109I RGGNCCY 1 cut(s) 757
EcoRI GAATTC 1 cut(s) 1031
EcoRII CCWGG 3 cut(s) 103, 125, 759
EcoT14I CCWWGG 2 cut(s) 353, 603
EcoT38I GRGCYC 1 cut(s) 469
ErhI CCWWGG 2 cut(s) 353, 603
FaeI CATG 9 cut(s) 357, 364, 714, 810, 919, 996, 1262, 1405, 1547
FalI AAGNNNNNCTT 2 cut(s) 1239, 1271
FaqI GGGAC 1 cut(s) 886
FatI CATG 9 cut(s) 353, 360, 710, 806, 915, 992, 1258, 1401, 1543
FauNDI CATATG 2 cut(s) 674, 1117
Fnu4HI GCNGC 6 cut(s) 21, 36, 377, 399, 636, 1092
FokI GGATG 3 cut(s) 282, 422, 1238
FriOI GRGCYC 1 cut(s) 469
Fsp4HI GCNGC 6 cut(s) 21, 36, 377, 399, 636, 1092
FspAI RTGCGCAY 1 cut(s) 1548
FspBI CTAG 4 cut(s) 116, 1019, 1349, 1455
FspI TGCGCA 1 cut(s) 1548
GlaI GCGC 1 cut(s) 1548
GluI GCNGC 6 cut(s) 21, 36, 377, 399, 636, 1092
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 9 cut(s) 103, 152, 252, 571, 690, 984, 1023, 1151, 1187
HapII CCGG 1 cut(s) 100
HgaI GACGC 1 cut(s) 1566
HhaI GCGC 1 cut(s) 1549
Hin1II CATG 9 cut(s) 357, 364, 714, 810, 919, 996, 1262, 1405, 1547
Hin6I GCGC 1 cut(s) 1547
HinP1I GCGC 1 cut(s) 1547
HpaII CCGG 1 cut(s) 100
HphI GGTGA 4 cut(s) 21, 119, 419, 1350
Hpy166II GTNNAC 4 cut(s) 83, 1324, 1561, 1591
Hpy188I TCNGA 9 cut(s) 183, 656, 1212, 1287, 1338, 1393, 1429, 1480, 1506
Hpy188III TCNNGA 6 cut(s) 344, 695, 737, 916, 1077, 1402
Hpy8I GTNNAC 4 cut(s) 83, 1324, 1561, 1591
HpyAV CCTTC 5 cut(s) 124, 268, 322, 701, 1343
HpyCH4III ACNGT 7 cut(s) 541, 913, 1321, 1328, 1491, 1565, 1595
HpyCH4IV ACGT 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 641
HpyF3I CTNAG 3 cut(s) 722, 900, 1087
HpySE526I ACGT 1 cut(s) 260
Hsp92II CATG 9 cut(s) 357, 364, 714, 810, 919, 996, 1262, 1405, 1547
HspAI GCGC 1 cut(s) 1547
KspI CCGCGG 1 cut(s) 377
Kzo9I GATC 4 cut(s) 409, 787, 1408, 1567
LmnI GCTCC 3 cut(s) 125, 376, 751
Lsp1109I GCAGC 4 cut(s) 7, 47, 385, 1078
LweI GCATC 4 cut(s) 243, 304, 516, 1278
MaeI CTAG 4 cut(s) 116, 1019, 1349, 1455
MaeII ACGT 1 cut(s) 260
MaeIII GTNAC 4 cut(s) 1228, 1267, 1328, 1457
MalI GATC 4 cut(s) 411, 789, 1410, 1569
MboI GATC 4 cut(s) 409, 787, 1408, 1567
MboII GAAGA 4 cut(s) 283, 579, 1379, 1493
MfeI CAATTG 1 cut(s) 479
MflI RGATCY 1 cut(s) 1408
MhlI GDGCHC 2 cut(s) 469, 1326
MlsI TGGCCA 2 cut(s) 252, 1151
MluNI TGGCCA 2 cut(s) 252, 1151
MlyI GAGTC 1 cut(s) 868
MnlI CCTC 7 cut(s) 133, 449, 573, 831, 1208, 1216, 1488
Mox20I TGGCCA 2 cut(s) 252, 1151
MroXI GAANNNNTTC 1 cut(s) 1254
MscI TGGCCA 2 cut(s) 252, 1151
MseI TTAA 3 cut(s) 192, 825, 1097
Msp20I TGGCCA 2 cut(s) 252, 1151
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 4 cut(s) 100, 105, 127, 761
MunI CAATTG 1 cut(s) 479
MvaI CCWGG 3 cut(s) 105, 127, 761
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 2 cut(s) 464, 641
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 1 cut(s) 353
NdeI CATATG 2 cut(s) 674, 1117
NdeII GATC 4 cut(s) 409, 787, 1408, 1567
NlaIII CATG 9 cut(s) 357, 364, 714, 810, 919, 996, 1262, 1405, 1547
NlaIV GGNNCC 6 cut(s) 121, 372, 747, 758, 1219, 1410
NmuCI GTSAC 3 cut(s) 1267, 1328, 1457
NsbI TGCGCA 1 cut(s) 1548
NspI RCATGY 1 cut(s) 714
NspV TTCGAA 1 cut(s) 157
PagI TCATGA 2 cut(s) 915, 1401
PciI ACATGT 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 1254
PflMI CCANNNNNTGG 1 cut(s) 969
PfoI TCCNGGA 1 cut(s) 125
PkrI GCNGC 6 cut(s) 22, 37, 378, 400, 637, 1093
PleI GAGTC 1 cut(s) 868
PpsI GAGTC 1 cut(s) 868
PpuMI RGGWCCY 1 cut(s) 757
PscI ACATGT 1 cut(s) 710
PsiI TTATAA 1 cut(s) 833
Psp5II RGGWCCY 1 cut(s) 757
Psp6I CCWGG 3 cut(s) 103, 125, 759
PspGI CCWGG 3 cut(s) 103, 125, 759
PspN4I GGNNCC 6 cut(s) 121, 372, 747, 758, 1219, 1410
PspPI GGNCC 5 cut(s) 80, 570, 757, 1186, 1561
PspPPI RGGWCCY 1 cut(s) 757
PsuI RGATCY 1 cut(s) 1408
RsaI GTAC 7 cut(s) 517, 563, 800, 819, 893, 1053, 1592
RsaNI GTAC 7 cut(s) 516, 562, 799, 818, 892, 1052, 1591
SacII CCGCGG 1 cut(s) 377
SaqAI TTAA 3 cut(s) 192, 825, 1097
SatI GCNGC 6 cut(s) 21, 36, 377, 399, 636, 1092
Sau3AI GATC 4 cut(s) 409, 787, 1408, 1567
Sau96I GGNCC 5 cut(s) 80, 570, 757, 1186, 1561
SchI GAGTC 1 cut(s) 868
ScrFI CCNGG 4 cut(s) 100, 105, 127, 761
SduI GDGCHC 2 cut(s) 469, 1326
SfaNI GCATC 4 cut(s) 243, 304, 516, 1278
SfcI CTRYAG 1 cut(s) 1059
Sfr303I CCGCGG 1 cut(s) 377
SfuI TTCGAA 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 377
SinI GGWCC 3 cut(s) 80, 757, 1561
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SsiI CCGC 3 cut(s) 374, 376, 636
SspI AATATT 1 cut(s) 1177
SspMI CTAG 4 cut(s) 116, 1019, 1349, 1455
StyD4I CCNGG 4 cut(s) 98, 103, 125, 759
StyI CCWWGG 2 cut(s) 353, 603
TaaI ACNGT 7 cut(s) 541, 913, 1321, 1328, 1491, 1565, 1595
TaiI ACGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 157
TatI WGTACW 2 cut(s) 561, 1051
TauI GCSGC 2 cut(s) 379, 638
Tru1I TTAA 3 cut(s) 192, 825, 1097
Tru9I TTAA 3 cut(s) 192, 825, 1097
TscAI CASTG 4 cut(s) 212, 339, 893, 1188
TseFI GTSAC 3 cut(s) 1267, 1328, 1457
TseI GCWGC 4 cut(s) 20, 35, 398, 1091
Tsp45I GTSAC 3 cut(s) 1267, 1328, 1457
TspDTI ATGAA 6 cut(s) 216, 718, 1196, 1247, 1390, 1401
TspRI CASTG 4 cut(s) 212, 339, 893, 1188
Van91I CCANNNNNTGG 1 cut(s) 969
VneI GTGCAC 1 cut(s) 1322
VpaK11BI GGWCC 3 cut(s) 80, 757, 1561
XagI CCTNNNNNAGG 1 cut(s) 577
XapI RAATTY 2 cut(s) 1031, 1127
XceI RCATGY 1 cut(s) 714
XcmI CCANNNNNNNNNTGG 1 cut(s) 1180
XmnI GAANNNNTTC 1 cut(s) 1254
XspI CTAG 4 cut(s) 116, 1019, 1349, 1455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.