Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012494

Orthogroup ID

OG0003678

Physical Location & Seq

Genomic Coordinates Forward (+)

233954 .. 235339

Gene Structure 1386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12494g00070.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCATTCATGTCAGTTATGTGTAGCTTTGCATAATTGTATTGACATTATAATCGTTCTCTTTACTTTCTTTGTACCTCTTAATTTTCTAAGATTCAATTTTCTTTCTGCTGGTGGAGACTATTATGGGACTCACAAGTGGTACTGGTACTTCACTGAAGGATTTACAGTCATGATTCTCTTTCTTACCATTTTCTGTTGCTGGAATCATGCAATCCAAACATTGGAAGCTTTCTGGTTTGTTCTGCCCGTACTTCCTATAGCTTTGATGTTCTCTGGGCATTCCTTAGCTGCATTAAGAACATCGGTTTCTGCAAATGGTAAAGGAAATGAACCATTGAATATCAATAACAAATGCCCTGCAAAAATGCAGTTGGCCATCTTTTTCTTGCTCGCTACCAATATTCCAATGGCCCTGTATATGAGTTTGGTTCATCAGAGAGGAACCGAGGATGTTACATACTATCTATCCAAAGAAAGGCTTCACGGAAAAGTGACAAATGTACTTTTTCTGATGCCTTGCCACGCTACACCTTATTACTCTACAGTTCACCGCAACCTTCCGATGAGATTCCTAGACTGCTCACCAAGTAAAGAAAAAGGAATCCTAGATGAATCAGACCAATTCATGATGGATCCTGTTGGTTTTACGTCAGAACTTGCAAAGAATTGGTCTTTCCCTAGTCACATTGTATTATTTGATTCGGAAGAAAAACAGTTGAGGGATTTTCTGATCTCACATTCTTTCAGAGAGGTGCATGCTACAACTCATAATTTTACTGCTGCAGTGTTTTTCCATGCTCACTTCAAAGTGGACCGTGATCTTCAAGTGTCAGTTATTGTGTATGGTTTGACAGGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031984 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glyco_transf_22

Protein Analysis

288

Amino Acids

32.93

Weight (kDa)

6.55

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14850 AT5G14850 AT5G14850 AT5G14850 AT5G14850 AT5G14850
fragaria_vesca	FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660 FvH4_4g09660
malus_domestica	MD13G1260800.v1.1 MD16G1262500.v1.1
prunus_persica	Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1 Prupe.1G097400_v2.0.a1
pyrus_communis	pycom12494g00070 pycom16g23140
rosa_chinensis	RchiOBHm_Chr4g0404951
rosa_laevigata	RLG00000008894
rosa_multiflora	Rmu_sc0000358.1_g000019
rosa_roxburghii	Rroxscaffold_5G00349080
rosa_rugosa	Rorug01G0141900.1 Rorug04G0049800
rosa_samantha	Rh4AG126100 Rh4BG120300 Rh4CG134300 Rh4DG119800
rosa_wichuraiana	Rw4G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	223
AciI	CCGC	1 cut(s)	553
AclWI	GGATC	2 cut(s)	629, 642
AcoI	YGGCCR	1 cut(s)	375
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	5 cut(s)	75, 143, 149, 252, 504
AfiI	CCNNNNNNNGG	2 cut(s)	223, 477
AgsI	TTSAA	4 cut(s)	97, 340, 808, 827
AluBI	AGCT	4 cut(s)	26, 230, 263, 290
AluI	AGCT	4 cut(s)	26, 230, 263, 290
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	629, 642
AoxI	GGCC	2 cut(s)	375, 411
ApeKI	GCWGC	2 cut(s)	290, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
Asp700I	GAANNNNTTC	1 cut(s)	480
AspS9I	GGNCC	2 cut(s)	412, 814
AsuHPI	GGTGA	2 cut(s)	542, 576
AvaII	GGWCC	1 cut(s)	814
BalI	TGGCCA	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	634
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbvI	GCAGC	2 cut(s)	277, 769
BccI	CCATC	2 cut(s)	386, 625
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	3 cut(s)	575, 608, 681
BfmI	CTRYAG	3 cut(s)	258, 543, 783
BisI	GCNGC	2 cut(s)	291, 783
BlsI	GCNGC	2 cut(s)	292, 784
Bme18I	GGWCC	1 cut(s)	814
BmgT120I	GGNCC	2 cut(s)	412, 814
BmiI	GGNNCC	2 cut(s)	445, 636
BmsI	GCATC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 477
Bse1I	ACTGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	2 cut(s)	223, 477
BseNI	ACTGG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	277, 769
BshFI	GGCC	2 cut(s)	377, 413
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	223, 477
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	142
BsmI	GAATGC	2 cut(s)	4, 280
BsnI	GGCC	2 cut(s)	377, 413
Bsp143I	GATC	3 cut(s)	634, 732, 820
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	2 cut(s)	377, 413
BspHI	TCATGA	2 cut(s)	171, 627
BspLI	GGNNCC	2 cut(s)	445, 636
BspMAI	CTGCAG	1 cut(s)	787
BspPI	GGATC	2 cut(s)	629, 642
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	3 cut(s)	634, 732, 820
Bst4CI	ACNGT	4 cut(s)	169, 547, 717, 818
BstC8I	GCNNGC	2 cut(s)	393, 759
BstDEI	CTNAG	2 cut(s)	89, 286
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	3 cut(s)	637, 735, 823
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	3 cut(s)	634, 732, 820
BstNSI	RCATGY	1 cut(s)	761
BstSFI	CTRYAG	3 cut(s)	258, 543, 783
BstV1I	GCAGC	2 cut(s)	277, 769
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BsuRI	GGCC	2 cut(s)	377, 413
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	2 cut(s)	153, 792
Cac8I	GCNNGC	2 cut(s)	393, 759
CciI	TCATGA	2 cut(s)	171, 627
Cfr13I	GGNCC	2 cut(s)	412, 814
Csp6I	GTAC	5 cut(s)	74, 142, 148, 251, 503
CviAII	CATG	6 cut(s)	9, 172, 209, 628, 758, 797
CviJI	RGCY	7 cut(s)	26, 230, 263, 290, 377, 413, 481
CviKI_1	RGCY	7 cut(s)	26, 230, 263, 290, 377, 413, 481
CviQI	GTAC	5 cut(s)	74, 142, 148, 251, 503
DdeI	CTNAG	2 cut(s)	89, 286
DpnI	GATC	3 cut(s)	636, 734, 822
DpnII	GATC	3 cut(s)	634, 732, 820
EaeI	YGGCCR	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	6 cut(s)	12, 175, 212, 631, 761, 800
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	6 cut(s)	8, 171, 208, 627, 757, 796
Fnu4HI	GCNGC	2 cut(s)	291, 783
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	2 cut(s)	291, 783
FspBI	CTAG	3 cut(s)	575, 608, 681
GluI	GCNGC	2 cut(s)	291, 783
HaeIII	GGCC	2 cut(s)	377, 413
Hin1II	CATG	6 cut(s)	12, 175, 212, 631, 761, 800
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	8 cut(s)	93, 130, 175, 205, 570, 603, 614, 701
HphI	GGTGA	2 cut(s)	542, 576
Hpy166II	GTNNAC	2 cut(s)	550, 814
Hpy188I	TCNGA	8 cut(s)	438, 513, 564, 619, 655, 706, 732, 749
Hpy188III	TCNNGA	2 cut(s)	172, 628
Hpy8I	GTNNAC	2 cut(s)	550, 814
HpyAV	CCTTC	2 cut(s)	152, 569
HpyCH4III	ACNGT	4 cut(s)	169, 547, 717, 818
HpyCH4IV	ACGT	1 cut(s)	650
HpyF3I	CTNAG	2 cut(s)	89, 286
HpySE526I	ACGT	1 cut(s)	650
Hsp92II	CATG	6 cut(s)	12, 175, 212, 631, 761, 800
Kzo9I	GATC	3 cut(s)	634, 732, 820
LpnPI	CCDG	9 cut(s)	96, 130, 187, 220, 261, 372, 428, 651, 840
Lsp1109I	GCAGC	2 cut(s)	277, 769
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	3 cut(s)	575, 608, 681
MaeII	ACGT	1 cut(s)	650
MaeIII	GTNAC	3 cut(s)	454, 493, 683
MalI	GATC	3 cut(s)	636, 734, 822
MboI	GATC	3 cut(s)	634, 732, 820
MboII	GAAGA	2 cut(s)	719, 815
MflI	RGATCY	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	6 cut(s)	34, 82, 97, 623, 667, 772
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	5 cut(s)	87, 434, 442, 714, 745
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	2 cut(s)	81, 296
Msp20I	TGGCCA	1 cut(s)	377
Mva1269I	GAATGC	2 cut(s)	4, 280
NdeII	GATC	3 cut(s)	634, 732, 820
NlaIII	CATG	6 cut(s)	12, 175, 212, 631, 761, 800
NlaIV	GGNNCC	2 cut(s)	445, 636
NmuCI	GTSAC	2 cut(s)	493, 683
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	761
PaeI	GCATGC	1 cut(s)	761
PagI	TCATGA	2 cut(s)	171, 627
PctI	GAATGC	2 cut(s)	4, 280
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	7 cut(s)	93, 175, 205, 570, 603, 614, 701
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	292, 784
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	445, 636
PspPI	GGNCC	2 cut(s)	412, 814
PstI	CTGCAG	1 cut(s)	787
PsuI	RGATCY	1 cut(s)	634
RsaI	GTAC	5 cut(s)	75, 143, 149, 252, 504
RsaNI	GTAC	5 cut(s)	74, 142, 148, 251, 503
SaqAI	TTAA	2 cut(s)	81, 296
SatI	GCNGC	2 cut(s)	291, 783
Sau3AI	GATC	3 cut(s)	634, 732, 820
Sau96I	GGNCC	2 cut(s)	412, 814
SchI	GAGTC	1 cut(s)	124
SetI	ASST	9 cut(s)	28, 79, 232, 265, 292, 535, 561, 653, 756
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	3 cut(s)	258, 543, 783
SinI	GGWCC	1 cut(s)	814
SphI	GCATGC	1 cut(s)	761
Sse9I	AATT	6 cut(s)	34, 82, 97, 623, 667, 772
SsiI	CCGC	1 cut(s)	553
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	3 cut(s)	575, 608, 681
TaaI	ACNGT	4 cut(s)	169, 547, 717, 818
TaiI	ACGT	1 cut(s)	653
TasI	AATT	6 cut(s)	34, 82, 97, 623, 667, 772
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	7 cut(s)	93, 175, 205, 570, 603, 614, 701
Tru1I	TTAA	2 cut(s)	81, 296
Tru9I	TTAA	2 cut(s)	81, 296
TscAI	CASTG	2 cut(s)	160, 792
TseFI	GTSAC	2 cut(s)	493, 683
TseI	GCWGC	2 cut(s)	290, 782
Tsp45I	GTSAC	2 cut(s)	493, 683
TspDTI	ATGAA	4 cut(s)	345, 422, 616, 627
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	2 cut(s)	160, 792
Van91I	CCANNNNNTGG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	814
XceI	RCATGY	1 cut(s)	761
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	3 cut(s)	575, 608, 681
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.