Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009266

Physical Location & Seq

Genomic Coordinates Reverse (-)

17151062 .. 17154106

Gene Structure 3045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13570.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGTCCTCCGCCCGCTCATCTCCACTCTACCGCGCCCTCCTCCGCTCCTTCTCCACCACCACCAGACCCTCCCACCACAACAGCCACCACCACACCCACCGCTACACCGAGCCGAGCTCCTTCATCGGCAGCTGGGACGCGCCGAGCAACCCCCGGGAGGCGGAGGCCAAGCTCGCGCAGCTCCGGCGAGACTACGCCAAGCAGGTCAAGGAGATCCGCAAGGAGTACATCAAGGAAGTCGAGCTCATGAGGCTCGAGAAGCTTCGCAAGGACGAGGCTCGTAAAGAAGCCCTTAGAGTCCAGAACGAGGAGCGCAAGAGGCTTAAGGCTGAGGCCGCCAAGGTCCGAGCTCAACAGCGCCAAATCGAGGAGGAGGAGTTTCGCCAAACCCTATTAAAAGAAAGAGCAGAAAAGCTTGAGAATTGGAAGATGAAGGAAATGCTTAGGGAAGAGAAGAAAAAGGAGAAGAATGAACTGTTACGACGTCAGAGTTCCCTATGGATTGATGAACCAGAACTGGAAAAGAAGATGCTTGAAGCCATTGTTGATAGCAAACAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

22.58

Weight (kDa)

9.72

Isoelectric Point (pI)

65.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49210 AT5G49210 AT5G49210
fragaria_vesca	FvH4_4g13570 FvH4_4g13570
malus_domestica	MD12G1086100.v1.1 MD14G1080700.v1.1
prunus_persica	Prupe.1G159300_v2.0.a1 Prupe.1G159300_v2.0.a1
pyrus_communis	pycom12g07310 pycom14g07000
rosa_chinensis	RchiOBHm_Chr4g0414321
rosa_laevigata	RLG00000008158
rosa_multiflora	Rmu_sc0005196.1_g000008 Rmu_sc0041188.1_g000002
rosa_roxburghii	Rroxscaffold_5G00358190
rosa_rugosa	Rorug04G0126800
rosa_samantha	Rh4AG184900 Rh4BG184500 Rh4CG197800 Rh4DG182100
rosa_wichuraiana	Rw4G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	196
AccBSI	CCGCTC	2 cut(s)	18, 48
AccII	CGCG	3 cut(s)	36, 143, 179
AciI	CCGC	8 cut(s)	12, 16, 34, 46, 103, 164, 220, 339
AclWI	GGATC	1 cut(s)	211
AcyI	GRCGYC	2 cut(s)	5, 487
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	4 cut(s)	160, 163, 310, 370
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	539
AluBI	AGCT	8 cut(s)	120, 135, 175, 184, 247, 265, 353, 418
AluI	AGCT	8 cut(s)	120, 135, 175, 184, 247, 265, 353, 418
Alw21I	GWGCWC	3 cut(s)	122, 249, 355
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	211
Ama87I	CYCGRG	2 cut(s)	156, 257
AoxI	GGCC	2 cut(s)	168, 336
ApeKI	GCWGC	2 cut(s)	132, 181
AspLEI	GCGC	5 cut(s)	38, 145, 181, 318, 363
AspS9I	GGNCC	1 cut(s)	346
AsuC2I	CCSGG	2 cut(s)	157, 158
AvaI	CYCGRG	2 cut(s)	156, 257
AvaII	GGWCC	1 cut(s)	346
BanII	GRGCYC	3 cut(s)	122, 249, 355
Bbv12I	GWGCWC	3 cut(s)	122, 249, 355
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	144, 193
BcnI	CCSGG	2 cut(s)	157, 158
BcoDI	GTCTC	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	364
BfrI	CTTAAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	3 cut(s)	133, 182, 339
BlsI	GCNGC	3 cut(s)	134, 183, 340
Bme1390I	CCNGG	2 cut(s)	157, 158
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	2 cut(s)	156, 257
BmgT120I	GGNCC	1 cut(s)	346
BmrFI	CCNGG	2 cut(s)	157, 158
BmsI	GCATC	1 cut(s)	522
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
Bpu10I	CCTNAGC	2 cut(s)	333, 446
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	157, 158
BsaHI	GRCGYC	2 cut(s)	5, 487
BsaJI	CCNNGG	3 cut(s)	155, 156, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 163, 310, 370
Bse1I	ACTGG	1 cut(s)	525
BseDI	CCNNGG	3 cut(s)	155, 156, 342
BseLI	CCNNNNNNNGG	4 cut(s)	160, 163, 310, 370
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	525
BseRI	GAGGAG	5 cut(s)	32, 326, 386, 389, 392
BseXI	GCAGC	2 cut(s)	144, 193
BseYI	CCCAGC	1 cut(s)	135
Bsh1236I	CGCG	3 cut(s)	36, 143, 179
BshFI	GGCC	2 cut(s)	170, 338
BsiHKAI	GWGCWC	3 cut(s)	122, 249, 355
BsiHKCI	CYCGRG	2 cut(s)	156, 257
BsiSI	CCGG	2 cut(s)	157, 187
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	4 cut(s)	160, 163, 310, 370
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	170, 338
BsoBI	CYCGRG	2 cut(s)	156, 257
Bsp1286I	GDGCHC	3 cut(s)	122, 249, 355
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	8 cut(s)	12, 16, 34, 46, 103, 164, 220, 339
BspANI	GGCC	2 cut(s)	170, 338
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	3 cut(s)	36, 143, 179
BspHI	TCATGA	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	326
BsrBI	CCGCTC	2 cut(s)	18, 48
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	3 cut(s)	155, 156, 342
BssMI	GATC	1 cut(s)	216
BssNI	GRCGYC	2 cut(s)	5, 487
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	447
BstACI	GRCGYC	2 cut(s)	5, 487
BstAFI	CTTAAG	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	16, 177
BstDEI	CTNAG	3 cut(s)	296, 333, 446
BstFNI	CGCG	3 cut(s)	36, 143, 179
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	5 cut(s)	38, 145, 181, 318, 363
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 176, 181, 187, 253, 262, 322, 338
BstSCI	CCNGG	2 cut(s)	155, 156
BstUI	CGCG	3 cut(s)	36, 143, 179
BstV1I	GCAGC	2 cut(s)	144, 193
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	170, 338
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	16, 177
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	5 cut(s)	38, 145, 181, 318, 363
Cfr13I	GGNCC	1 cut(s)	346
Cfr9I	CCCGGG	1 cut(s)	156
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	3 cut(s)	296, 333, 446
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	179
Ecl136II	GAGCTC	3 cut(s)	120, 247, 353
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	3 cut(s)	122, 249, 355
Eco47I	GGWCC	1 cut(s)	346
Eco53kI	GAGCTC	3 cut(s)	120, 247, 353
Eco88I	CYCGRG	2 cut(s)	156, 257
EcoICRI	GAGCTC	3 cut(s)	120, 247, 353
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	3 cut(s)	122, 249, 355
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	1 cut(s)	253
FaiI	YATR	2 cut(s)	251, 502
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	3 cut(s)	133, 182, 339
FriOI	GRGCYC	3 cut(s)	122, 249, 355
Fsp4HI	GCNGC	3 cut(s)	133, 182, 339
GlaI	GCGC	5 cut(s)	37, 144, 180, 317, 362
GluI	GCNGC	3 cut(s)	133, 182, 339
GsaI	CCCAGC	1 cut(s)	139
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	2 cut(s)	170, 338
HapII	CCGG	2 cut(s)	157, 187
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	5 cut(s)	38, 145, 181, 318, 363
Hin1I	GRCGYC	2 cut(s)	5, 487
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	5 cut(s)	36, 143, 179, 316, 361
HinP1I	GCGC	5 cut(s)	36, 143, 179, 316, 361
HindIII	AAGCTT	2 cut(s)	263, 416
HinfI	GANTC	1 cut(s)	300
HpaII	CCGG	2 cut(s)	157, 187
Hpy188I	TCNGA	2 cut(s)	350, 492
Hpy188III	TCNNGA	3 cut(s)	250, 259, 304
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	3 cut(s)	61, 133, 430
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	1 cut(s)	487
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 176, 181, 187, 253, 262, 322, 338
HpyF3I	CTNAG	3 cut(s)	296, 333, 446
HpySE526I	ACGT	1 cut(s)	487
Hsp92I	GRCGYC	2 cut(s)	5, 487
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	5 cut(s)	36, 143, 179, 316, 361
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	4 cut(s)	53, 125, 189, 313
LpnPI	CCDG	8 cut(s)	79, 121, 170, 191, 200, 317, 506, 528
Lsp1109I	GCAGC	2 cut(s)	144, 193
LweI	GCATC	1 cut(s)	522
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	1 cut(s)	218
MbiI	CCGCTC	2 cut(s)	18, 48
MboI	GATC	1 cut(s)	216
MboII	GAAGA	5 cut(s)	442, 464, 469, 481, 541
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	3 cut(s)	122, 249, 355
MluCI	AATT	1 cut(s)	424
MlyI	GAGTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	327, 398
MspA1I	CMGCKG	1 cut(s)	135
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	2 cut(s)	157, 187
MspR9I	CCNGG	2 cut(s)	157, 158
MvnI	CGCG	3 cut(s)	36, 143, 179
MwoI	GCNNNNNNNGC	8 cut(s)	11, 176, 181, 187, 253, 262, 322, 338
NciI	CCSGG	2 cut(s)	157, 158
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	1 cut(s)	253
NmeAIII	GCCGAG	2 cut(s)	141, 171
PaeR7I	CTCGAG	1 cut(s)	257
PagI	TCATGA	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	134, 183, 340
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Psp124BI	GAGCTC	3 cut(s)	122, 249, 355
PspFI	CCCAGC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	135
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SacI	GAGCTC	3 cut(s)	122, 249, 355
SaqAI	TTAA	2 cut(s)	327, 398
SatI	GCNGC	3 cut(s)	133, 182, 339
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	2 cut(s)	157, 158
SduI	GDGCHC	3 cut(s)	122, 249, 355
SfaNI	GCATC	1 cut(s)	522
Sfr274I	CTCGAG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	346
SlaI	CTCGAG	1 cut(s)	257
SmaI	CCCGGG	1 cut(s)	158
SmlI	CTYRAG	3 cut(s)	257, 326, 419
SmoI	CTYRAG	3 cut(s)	257, 326, 419
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	8 cut(s)	12, 16, 34, 46, 103, 164, 220, 339
SstI	GAGCTC	3 cut(s)	122, 249, 355
StyD4I	CCNGG	2 cut(s)	155, 156
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	3 cut(s)	243, 258, 369
TasI	AATT	1 cut(s)	424
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	327, 398
Tru9I	TTAA	2 cut(s)	327, 398
TseI	GCWGC	2 cut(s)	132, 181
TspDTI	ATGAA	4 cut(s)	115, 449, 489, 525
TspMI	CCCGGG	1 cut(s)	156
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	257
XmaI	CCCGGG	1 cut(s)	156
ZraI	GACGTC	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.