Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005196.1

Orthogroup ID

OG0009266

Physical Location & Seq

Genomic Coordinates Reverse (-)

31413 .. 34969

Gene Structure 3557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005196.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgctctgcccattgggccttgacgcttttgcatccaactccaacccgacccacatttgccctttctcgtctcttaaaccctctcagagtctcagaccagtcccaactgaaaaaacgacacacaaaacaatggcgtcctcccggtcttcactgtaccgcaccctccgctccttctccaccaccaccagaccctcccaccacaacagccaccaccacactcaccgctacaccgagccgagctccttcatcggaagctgggacgcgccgagcaaccccaaggaggcgcaggccaagctcgcgcatctccggcgagactacgcgaagcaggtcaaggagatccgcaaggagtacatcaaggaggtggagctgatgaggctcgagaagctccgaaaggacgaggcccgtaaagaagccctcaggctacagaacgaggagcgcaagaggctcaaggccgaggccgctaaggtccgggctcaacagcgccaggtcgccgaggaggagttccgccaaaccctattaaaagaaagagcagaaaagcttgagaattggaagatgaaggaaatgcttagggaagagaagaaaaaacagaagaatgaactgctacgacatcaaagttccctatggattgatgaaccagaactggaaaagaagatgcttgaagccattgttgataccagacccctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

26.87

Weight (kDa)

9.8

Isoelectric Point (pI)

62.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49210 AT5G49210 AT5G49210
fragaria_vesca	FvH4_4g13570 FvH4_4g13570
malus_domestica	MD12G1086100.v1.1 MD14G1080700.v1.1
prunus_persica	Prupe.1G159300_v2.0.a1 Prupe.1G159300_v2.0.a1
pyrus_communis	pycom12g07310 pycom14g07000
rosa_chinensis	RchiOBHm_Chr4g0414321
rosa_laevigata	RLG00000008158
rosa_multiflora	Rmu_sc0005196.1_g000008 Rmu_sc0041188.1_g000002
rosa_roxburghii	Rroxscaffold_5G00358190
rosa_rugosa	Rorug04G0126800
rosa_samantha	Rh4AG184900 Rh4BG184500 Rh4CG197800 Rh4DG182100
rosa_wichuraiana	Rw4G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	168
AccII	CGCG	3 cut(s)	263, 299, 320
AciI	CCGC	6 cut(s)	157, 166, 223, 340, 459, 505
AclWI	GGATC	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	2 cut(s)	155, 350
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	6 cut(s)	240, 255, 295, 367, 385, 538
AluI	AGCT	6 cut(s)	240, 255, 295, 367, 385, 538
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	3 cut(s)	75, 95, 306
AlwI	GGATC	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	5 cut(s)	16, 288, 399, 450, 456
AspLEI	GCGC	5 cut(s)	265, 286, 301, 438, 483
AspS9I	GGNCC	3 cut(s)	16, 400, 466
AsuC2I	CCSGG	2 cut(s)	142, 470
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	466
AxyI	CCTNAGG	1 cut(s)	416
BanII	GRGCYC	2 cut(s)	242, 475
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	485
BcnI	CCSGG	2 cut(s)	142, 470
BcoDI	GTCTC	3 cut(s)	75, 95, 306
BfmI	CTRYAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	484
BfuAI	ACCTGC	1 cut(s)	316
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	3 cut(s)	142, 470, 485
Bme18I	GGWCC	1 cut(s)	466
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	3 cut(s)	16, 400, 466
BmrFI	CCNGG	3 cut(s)	142, 470, 485
BmsI	GCATC	3 cut(s)	41, 310, 642
BpiI	GAAGAC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
Bpu10I	CCTNAGC	2 cut(s)	462, 566
BpuEI	CTTGAG	2 cut(s)	431, 560
BpuMI	CCSGG	2 cut(s)	142, 470
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	276, 453, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	98, 645
Bse21I	CCTNAGG	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	3 cut(s)	276, 453, 492
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	3 cut(s)	98, 106, 430
BseNI	ACTGG	2 cut(s)	98, 645
BseRI	GAGGAG	3 cut(s)	446, 509, 512
BseYI	CCCAGC	1 cut(s)	255
Bsh1236I	CGCG	3 cut(s)	263, 299, 320
BshFI	GGCC	5 cut(s)	18, 290, 401, 452, 458
BsiHKAI	GWGCWC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	142, 307, 469
BslFI	GGGAC	2 cut(s)	86, 272
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	3 cut(s)	75, 95, 306
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	86, 272
BsnI	GGCC	5 cut(s)	18, 290, 401, 452, 458
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	242, 475
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	6 cut(s)	157, 166, 223, 340, 459, 505
BspANI	GGCC	5 cut(s)	18, 290, 401, 452, 458
BspCNI	CTCAG	3 cut(s)	97, 105, 429
BspFNI	CGCG	3 cut(s)	263, 299, 320
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	331
BsrBI	CCGCTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	98, 645
BssECI	CCNNGG	3 cut(s)	276, 453, 492
BssMI	GATC	1 cut(s)	336
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	567
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	288, 297
BstDEI	CTNAG	5 cut(s)	84, 92, 416, 462, 566
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	3 cut(s)	263, 299, 320
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	5 cut(s)	265, 286, 301, 438, 483
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	3 cut(s)	75, 95, 306
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	9 cut(s)	15, 165, 292, 296, 307, 373, 382, 442, 458
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	3 cut(s)	140, 468, 483
BstSFI	CTRYAG	1 cut(s)	422
BstUI	CGCG	3 cut(s)	263, 299, 320
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
Bsu36I	CCTNAGG	1 cut(s)	416
BsuRI	GGCC	5 cut(s)	18, 290, 401, 452, 458
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	288, 297
CfoI	GCGC	5 cut(s)	265, 286, 301, 438, 483
Cfr13I	GGNCC	3 cut(s)	16, 400, 466
CseI	GACGC	3 cut(s)	32, 123, 269
Csp6I	GTAC	2 cut(s)	154, 349
CviQI	GTAC	2 cut(s)	154, 349
DdeI	CTNAG	5 cut(s)	84, 92, 416, 462, 566
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
EciI	GGCGGA	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	242, 475
Eco47I	GGWCC	1 cut(s)	466
Eco53kI	GAGCTC	1 cut(s)	240
Eco81I	CCTNAGG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	242, 475
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	75
FaiI	YATR	1 cut(s)	622
FaqI	GGGAC	2 cut(s)	86, 272
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	2 cut(s)	242, 475
Fsp4HI	GCNGC	1 cut(s)	459
GlaI	GCGC	5 cut(s)	264, 285, 300, 437, 482
GluI	GCNGC	1 cut(s)	459
GsaI	CCCAGC	1 cut(s)	259
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	5 cut(s)	18, 290, 401, 452, 458
HapII	CCGG	3 cut(s)	142, 307, 469
HgaI	GACGC	3 cut(s)	32, 123, 269
HhaI	GCGC	5 cut(s)	265, 286, 301, 438, 483
Hin1I	GRCGYC	1 cut(s)	134
Hin6I	GCGC	5 cut(s)	263, 284, 299, 436, 481
HinP1I	GCGC	5 cut(s)	263, 284, 299, 436, 481
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	3 cut(s)	142, 307, 469
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	4 cut(s)	87, 95, 251, 389
Hpy188III	TCNNGA	1 cut(s)	379
HpyAV	CCTTC	3 cut(s)	181, 253, 550
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	9 cut(s)	15, 165, 292, 296, 307, 373, 382, 442, 458
HpyF3I	CTNAG	5 cut(s)	84, 92, 416, 462, 566
Hsp92I	GRCGYC	1 cut(s)	134
HspAI	GCGC	5 cut(s)	263, 284, 299, 436, 481
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	5 cut(s)	173, 245, 364, 390, 433
LweI	GCATC	3 cut(s)	41, 310, 642
MalI	GATC	1 cut(s)	338
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	1 cut(s)	336
MboII	GAAGA	6 cut(s)	138, 562, 584, 589, 601, 661
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	2 cut(s)	242, 475
MluCI	AATT	1 cut(s)	544
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	2 cut(s)	60, 66
MseI	TTAA	2 cut(s)	75, 518
MspI	CCGG	3 cut(s)	142, 307, 469
MspR9I	CCNGG	3 cut(s)	142, 470, 485
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	3 cut(s)	263, 299, 320
MwoI	GCNNNNNNNGC	9 cut(s)	15, 165, 292, 296, 307, 373, 382, 442, 458
NciI	CCSGG	2 cut(s)	142, 470
NdeII	GATC	1 cut(s)	336
NmeAIII	GCCGAG	4 cut(s)	261, 291, 478, 517
PaeR7I	CTCGAG	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	483
PspPI	GGNCC	3 cut(s)	16, 400, 466
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	2 cut(s)	155, 350
RsaNI	GTAC	2 cut(s)	154, 349
SacI	GAGCTC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	75, 518
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	3 cut(s)	16, 400, 466
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	3 cut(s)	142, 470, 485
SduI	GDGCHC	2 cut(s)	242, 475
SfaNI	GCATC	3 cut(s)	41, 310, 642
SfcI	CTRYAG	1 cut(s)	422
Sfr274I	CTCGAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	466
SlaI	CTCGAG	1 cut(s)	377
SmlI	CTYRAG	3 cut(s)	377, 446, 539
SmoI	CTYRAG	3 cut(s)	377, 446, 539
Sse9I	AATT	1 cut(s)	544
SsiI	CCGC	6 cut(s)	157, 166, 223, 340, 459, 505
SstI	GAGCTC	1 cut(s)	242
StyD4I	CCNGG	3 cut(s)	140, 468, 483
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	378
TasI	AATT	1 cut(s)	544
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	75, 518
Tru9I	TTAA	2 cut(s)	75, 518
TscAI	CASTG	1 cut(s)	156
TspDTI	ATGAA	4 cut(s)	235, 569, 609, 645
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	466
XhoI	CTCGAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.