Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Reverse (-)

20116033 .. 20123502

Gene Structure 7470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGAATCTCCGTCGTCATCGGCGACGCGCGTGACGGCGCGATCGTCGGTGATGGACTCGATCAGGGGGTGCAGCCTATCGGGGATTCGGATTGACAAGGAGGATTTGAAGAAGAAGCTGCTGATGCCGACCTACATACGCTTCGCCATGAGGGATTCGATCAGGTTGAAGGACCGGACCGCCGGAGAGAGCCGGCTTCCCGGAAGCAGAGACCTCGTCGCCGTTCCCTCCGACGGCAATGGCGAGGAGTCGTCGGCGCCGGAGATGCCTATGGTTGTGTTTATTAATCCGAAGAGCGGTGGCAGACACGGACCTATGCTTAAGGAGAGGCTTCAGCTGCTCATGGGCGAAGAGCAGGTTTTTGACCTCTCAGATGTGAAGCCTCATGAATTTGTTCAGTATGGATTGGGTTGTCTTGAGCGGTTTGCGGAACTTGGTGACAAGTGTGCAAAAGAGTGTCGTCAAAAGATCAGGGTTATGGTTGCAGGGGGTGATGGGACAGTTGGTTGGGTGCTAGGTTGTCTATATGAGCTTCAGAAGCAGGGCAGGGAACCAGTTCCTCCAGTAGGAATTATTCCACTTGGAACGGGAAATGATCTGTCTAGGAGTTTTGGTTGGGGTGGCTCATTCCCTTTCGCCTGGAAATCAGCCATAAAAAAAACTCTTTTCAGAGCTACTACAGGGCCTCTTTGTCGTTTGGATAGTTGGAATATTCTAATACAAATGCCAGATGGTGCAGTTTTGGAACCACCTCATTCTTTGAAGCTTGCCGACGAGTGCACTCTCGATGAGGGTTTGGAAATTCAAGGGCGGTTGCCTGAGAAACGGACTTGCTACGAAGGAGTGTTTTATAATTACTTTAGCATAGGGATGGATGCCAAAGTAGCTTATGGATTCCACCATCTAAGAAACGAGAAACCCTATCTTGCACAAGGTCCAATTTCGAATAAGTTGGTTTACTCTGGTTACAGTTGCACACAAGGCTGGTTCTTCACACCTTGCACAAGTAATCCAAGTTTAAGGGGACTAAAGAATATCCTAAGGATGCATGTTAAAAAGGTTAATTGCTCAGAATGGGAGCAGATTCCAGTGCCGTCAAGTGTAAGGGCAATCGTTGCTCTGAATCTTCATAGCTATGGGAGCGGAAGAAACCCATGGGGTAATCTGAAGCCTGATTACTTGGAAAAGAAAGGCTTTGTGGAGGCCCATGCTGATGATGGTCTTCTAGAAATTTTTGGCCTGAAACAAGGATGGCATGCATCATTTGTTATGGTTGAACTCATCTCTGCCAAACATATTGCCCAGGCTGCTGCAATTCGGTTGGAAGTTAGAGGTGGGGAATGGAGAAATGCATATATGCAAATGGATGGGGAGCCATGGAAGCAGCCAATGGATGAGGAATTTTCAACGCTTGTGGAAATTAAGAGGGTTCCTTATCAATCACCGATGATTAGTGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

487

Amino Acids

54.25

Weight (kDa)

8.19

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_cat	PF00781	91 - 224	5.3e-24	Diacylglycerol kinase catalytic domain
DAGK_acc	PF00609	282 - 459	5.8e-43	Diacylglycerol kinase accessory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
Acc36I	ACCTGC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	256
AccBSI	CCGCTC	3 cut(s)	297, 421, 1143
AccII	CGCG	3 cut(s)	28, 30, 40
AciI	CCGC	6 cut(s)	180, 297, 421, 428, 811, 1143
AcsI	RAATTY	4 cut(s)	389, 801, 1230, 1400
AcuI	CTGAAG	3 cut(s)	317, 518, 1187
AcyI	GRCGYC	1 cut(s)	257
AfiI	CCNNNNNNNGG	3 cut(s)	233, 296, 566
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	6 cut(s)	109, 169, 763, 806, 1277, 1407
AjnI	CCWGG	2 cut(s)	638, 1302
AluBI	AGCT	7 cut(s)	118, 337, 532, 674, 766, 887, 1134
AluI	AGCT	7 cut(s)	118, 337, 532, 674, 766, 887, 1134
Alw21I	GWGCWC	1 cut(s)	782
Alw26I	GTCTC	2 cut(s)	204, 1452
Alw44I	GTGCAC	1 cut(s)	778
AoxI	GGCC	3 cut(s)	683, 1203, 1237
ApaLI	GTGCAC	1 cut(s)	778
ApeKI	GCWGC	6 cut(s)	72, 118, 337, 1307, 1310, 1384
ApoI	RAATTY	4 cut(s)	389, 801, 1230, 1400
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	2 cut(s)	393, 555
AspLEI	GCGC	3 cut(s)	30, 40, 259
AspS9I	GGNCC	6 cut(s)	172, 177, 311, 683, 935, 1204
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	4 cut(s)	61, 449, 503, 1434
AsuII	TTCGAA	1 cut(s)	944
AvaII	GGWCC	4 cut(s)	172, 177, 311, 935
AxyI	CCTNAGG	1 cut(s)	1040
BaeGI	GKGCMC	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	256
BarI	GAAGNNNNNNTAC	2 cut(s)	1160, 1192
BbsI	GAAGAC	1 cut(s)	1214
Bbv12I	GWGCWC	1 cut(s)	782
BbvI	GCAGC	6 cut(s)	84, 105, 324, 1294, 1297, 1396
BccI	CCATC	8 cut(s)	46, 488, 725, 865, 909, 1211, 1245, 1361
BceAI	ACGGC	4 cut(s)	51, 206, 250, 1078
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	2 cut(s)	640, 1304
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	204, 1452
BfaI	CTAG	3 cut(s)	515, 603, 1226
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	6 cut(s)	73, 119, 338, 1308, 1311, 1385
BlsI	GCNGC	6 cut(s)	74, 120, 339, 1309, 1312, 1386
Bme1390I	CCNGG	3 cut(s)	201, 640, 1304
Bme18I	GGWCC	4 cut(s)	172, 177, 311, 935
BmgT120I	GGNCC	6 cut(s)	172, 177, 311, 683, 935, 1204
BmiI	GGNNCC	5 cut(s)	258, 552, 747, 1374, 1431
BmrFI	CCNGG	3 cut(s)	201, 640, 1304
BmsI	GCATC	5 cut(s)	114, 255, 865, 1035, 1268
BpiI	GAAGAC	1 cut(s)	1214
BpmI	CTGGAG	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	944
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	1154, 1302, 1376
BsaWI	WCCGGW	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 296, 566
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	3 cut(s)	554, 563, 1088
Bse21I	CCTNAGG	1 cut(s)	1040
Bse3DI	GCAATG	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	640, 1304
BseDI	CCNNGG	3 cut(s)	1154, 1302, 1376
BseGI	GGATG	6 cut(s)	876, 880, 1050, 1256, 1372, 1399
BseLI	CCNNNNNNNGG	3 cut(s)	233, 296, 566
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	3 cut(s)	384, 810, 1083
BseNI	ACTGG	3 cut(s)	554, 563, 1088
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	782
BseXI	GCAGC	6 cut(s)	84, 105, 324, 1294, 1297, 1396
BsgI	GTGCAG	2 cut(s)	91, 756
Bsh1236I	CGCG	3 cut(s)	28, 30, 40
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	685, 1205, 1239
BshNI	GGYRCC	1 cut(s)	256
BsiEI	CGRYCG	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	782
BsiSI	CCGG	5 cut(s)	175, 183, 193, 201, 260
BslFI	GGGAC	2 cut(s)	511, 1038
BslI	CCNNNNNNNGG	3 cut(s)	233, 296, 566
BsmAI	GTCTC	2 cut(s)	204, 1452
BsmFI	GGGAC	2 cut(s)	511, 1038
BsnI	GGCC	3 cut(s)	685, 1205, 1239
Bso31I	GGTCTC	1 cut(s)	204
Bsp119I	TTCGAA	1 cut(s)	944
Bsp1286I	GDGCHC	1 cut(s)	782
Bsp143I	GATC	5 cut(s)	41, 60, 159, 468, 595
Bsp19I	CCATGG	2 cut(s)	1154, 1376
BspACI	CCGC	6 cut(s)	180, 297, 421, 428, 811, 1143
BspANI	GGCC	3 cut(s)	685, 1205, 1239
BspCNI	CTCAG	3 cut(s)	383, 811, 1082
BspFNI	CGCG	3 cut(s)	28, 30, 40
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	5 cut(s)	258, 552, 747, 1374, 1431
BspMI	ACCTGC	1 cut(s)	346
BspQI	GCTCTTC	2 cut(s)	287, 345
BspT104I	TTCGAA	1 cut(s)	944
BspT107I	GGYRCC	1 cut(s)	256
BspTI	CTTAAG	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	204
BsrBI	CCGCTC	3 cut(s)	297, 421, 1143
BsrDI	GCAATG	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	554, 563, 1088
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	3 cut(s)	1154, 1302, 1376
BssMI	GATC	5 cut(s)	41, 60, 159, 468, 595
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	1154, 1376
Bst2UI	CCWGG	2 cut(s)	640, 1304
Bst4CI	ACNGT	2 cut(s)	502, 971
Bst6I	CTCTTC	2 cut(s)	287, 345
BstACI	GRCGYC	1 cut(s)	257
BstAFI	CTTAAG	1 cut(s)	320
BstAPI	GCANNNNNTGC	1 cut(s)	1115
BstBI	TTCGAA	1 cut(s)	944
BstC8I	GCNNGC	3 cut(s)	194, 768, 1257
BstDEI	CTNAG	5 cut(s)	370, 819, 905, 1040, 1069
BstDSI	CCRYGG	2 cut(s)	1154, 1376
BstENI	CCTNNNNNAGG	1 cut(s)	564
BstF5I	GGATG	6 cut(s)	876, 880, 1050, 1256, 1372, 1399
BstFNI	CGCG	3 cut(s)	28, 30, 40
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	3 cut(s)	30, 40, 259
BstKTI	GATC	5 cut(s)	44, 63, 162, 471, 598
BstMAI	GTCTC	2 cut(s)	204, 1452
BstMBI	GATC	5 cut(s)	41, 60, 159, 468, 595
BstMCI	CGRYCG	1 cut(s)	44
BstNI	CCWGG	2 cut(s)	640, 1304
BstNSI	RCATGY	2 cut(s)	1052, 1259
BstSCI	CCNGG	3 cut(s)	199, 638, 1302
BstSFI	CTRYAG	1 cut(s)	678
BstSLI	GKGCMC	1 cut(s)	782
BstUI	CGCG	3 cut(s)	28, 30, 40
BstV1I	GCAGC	6 cut(s)	84, 105, 324, 1294, 1297, 1396
BstV2I	GAAGAC	1 cut(s)	1214
Bsu36I	CCTNAGG	1 cut(s)	1040
BsuRI	GGCC	3 cut(s)	685, 1205, 1239
BtgI	CCRYGG	2 cut(s)	1154, 1376
BtsCI	GGATG	6 cut(s)	876, 880, 1050, 1256, 1372, 1399
BtsIMutI	CAGTG	1 cut(s)	1095
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	3 cut(s)	194, 768, 1257
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	3 cut(s)	30, 40, 259
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	6 cut(s)	172, 177, 311, 683, 935, 1204
CpoI	CGGWCCG	1 cut(s)	177
CseI	GACGC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	1395, 1430
CspI	CGGWCCG	1 cut(s)	177
CviAII	CATG	8 cut(s)	148, 343, 386, 1049, 1155, 1208, 1256, 1377
DdeI	CTNAG	5 cut(s)	370, 819, 905, 1040, 1069
DinI	GGCGCC	1 cut(s)	258
DpnI	GATC	5 cut(s)	43, 62, 161, 470, 597
DpnII	GATC	5 cut(s)	41, 60, 159, 468, 595
Eam1104I	CTCTTC	2 cut(s)	287, 345
EarI	CTCTTC	2 cut(s)	287, 345
Eco130I	CCWWGG	2 cut(s)	1154, 1376
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	4 cut(s)	172, 177, 311, 935
Eco57I	CTGAAG	3 cut(s)	317, 518, 1187
Eco81I	CCTNAGG	1 cut(s)	1040
EcoNI	CCTNNNNNAGG	1 cut(s)	564
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	638, 1302
EcoT14I	CCWWGG	2 cut(s)	1154, 1376
EcoT22I	ATGCAT	3 cut(s)	1050, 1261, 1354
EgeI	GGCGCC	1 cut(s)	258
EheI	GGCGCC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	1154, 1376
FaeI	CATG	8 cut(s)	151, 346, 389, 1052, 1158, 1211, 1259, 1380
FalI	AAGNNNNNCTT	2 cut(s)	1178, 1210
FaqI	GGGAC	2 cut(s)	511, 1038
FatI	CATG	8 cut(s)	147, 342, 385, 1048, 1154, 1207, 1255, 1376
Fnu4HI	GCNGC	6 cut(s)	73, 119, 338, 1308, 1311, 1385
FokI	GGATG	6 cut(s)	883, 887, 1057, 1263, 1379, 1406
Fsp4HI	GCNGC	6 cut(s)	73, 119, 338, 1308, 1311, 1385
FspBI	CTAG	3 cut(s)	515, 603, 1226
GlaI	GCGC	3 cut(s)	29, 39, 258
GluI	GCNGC	6 cut(s)	73, 119, 338, 1308, 1311, 1385
GsuI	CTGGAG	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	685, 1205, 1239
HapII	CCGG	5 cut(s)	175, 183, 193, 201, 260
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	3 cut(s)	30, 40, 259
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	8 cut(s)	151, 346, 389, 1052, 1158, 1211, 1259, 1380
Hin6I	GCGC	3 cut(s)	28, 38, 257
HinP1I	GCGC	3 cut(s)	28, 38, 257
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	8 cut(s)	5, 56, 85, 155, 248, 894, 1084, 1123
HpaII	CCGG	5 cut(s)	175, 183, 193, 201, 260
HphI	GGTGA	4 cut(s)	61, 449, 503, 1434
Hpy166II	GTNNAC	2 cut(s)	780, 958
Hpy188I	TCNGA	9 cut(s)	90, 232, 291, 373, 537, 671, 1072, 1122, 1167
Hpy188III	TCNNGA	4 cut(s)	386, 416, 785, 1226
Hpy8I	GTNNAC	2 cut(s)	780, 958
Hpy99I	CGWCG	7 cut(s)	16, 28, 49, 221, 236, 256, 776
HpyAV	CCTTC	2 cut(s)	163, 833
HpyCH4III	ACNGT	2 cut(s)	502, 971
HpyF3I	CTNAG	5 cut(s)	370, 819, 905, 1040, 1069
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	8 cut(s)	151, 346, 389, 1052, 1158, 1211, 1259, 1380
HspAI	GCGC	3 cut(s)	28, 38, 257
KasI	GGCGCC	1 cut(s)	256
KroI	GCCGGC	1 cut(s)	192
KroNI	GCCGGC	1 cut(s)	194
Kzo9I	GATC	5 cut(s)	41, 60, 159, 468, 595
LguI	GCTCTTC	2 cut(s)	287, 345
LmnI	GCTCC	3 cut(s)	1078, 1140, 1372
Lsp1109I	GCAGC	6 cut(s)	84, 105, 324, 1294, 1297, 1396
LweI	GCATC	5 cut(s)	114, 255, 865, 1035, 1268
MaeI	CTAG	3 cut(s)	515, 603, 1226
MaeIII	GTNAC	3 cut(s)	31, 437, 965
MalI	GATC	5 cut(s)	43, 62, 161, 470, 597
MbiI	CCGCTC	3 cut(s)	297, 421, 1143
MboI	GATC	5 cut(s)	41, 60, 159, 468, 595
MboII	GAAGA	8 cut(s)	121, 124, 304, 362, 982, 1118, 1158, 1214
MhlI	GDGCHC	1 cut(s)	782
Mly113I	GGCGCC	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	50, 257
MmeI	TCCRAC	3 cut(s)	255, 686, 1302
Mph1103I	ATGCAT	3 cut(s)	1050, 1261, 1354
MroNI	GCCGGC	1 cut(s)	192
MroXI	GAANNNNTTC	2 cut(s)	393, 555
MseI	TTAA	6 cut(s)	285, 321, 1019, 1053, 1062, 1422
MslI	CAYNNNNRTG	3 cut(s)	869, 1134, 1212
MspA1I	CMGCKG	1 cut(s)	337
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	5 cut(s)	175, 183, 193, 201, 260
MspR9I	CCNGG	3 cut(s)	201, 640, 1304
MvaI	CCWGG	2 cut(s)	640, 1304
MvnI	CGCG	3 cut(s)	28, 30, 40
NaeI	GCCGGC	1 cut(s)	194
NarI	GGCGCC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	201
NcoI	CCATGG	2 cut(s)	1154, 1376
NdeII	GATC	5 cut(s)	41, 60, 159, 468, 595
NgoMIV	GCCGGC	1 cut(s)	192
NlaIII	CATG	8 cut(s)	151, 346, 389, 1052, 1158, 1211, 1259, 1380
NlaIV	GGNNCC	5 cut(s)	258, 552, 747, 1374, 1431
NmuCI	GTSAC	2 cut(s)	31, 437
NsiI	ATGCAT	3 cut(s)	1050, 1261, 1354
NspI	RCATGY	2 cut(s)	1052, 1259
NspV	TTCGAA	1 cut(s)	944
PaeI	GCATGC	1 cut(s)	1259
PagI	TCATGA	1 cut(s)	385
PciSI	GCTCTTC	2 cut(s)	287, 345
PcsI	WCGNNNNNNNCGW	3 cut(s)	20, 41, 240
PdiI	GCCGGC	1 cut(s)	194
PdmI	GAANNNNTTC	2 cut(s)	393, 555
PfeI	GAWTC	6 cut(s)	5, 85, 155, 894, 1084, 1123
PflFI	GACNNNGTC	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	6 cut(s)	74, 120, 339, 1309, 1312, 1386
Ple19I	CGATCG	1 cut(s)	44
PleI	GAGTC	2 cut(s)	50, 256
PluTI	GGCGCC	1 cut(s)	260
PpsI	GAGTC	2 cut(s)	50, 256
PshBI	ATTAAT	1 cut(s)	285
PsiI	TTATAA	1 cut(s)	852
Psp6I	CCWGG	2 cut(s)	638, 1302
PspGI	CCWGG	2 cut(s)	638, 1302
PspN4I	GGNNCC	5 cut(s)	258, 552, 747, 1374, 1431
PspPI	GGNCC	6 cut(s)	172, 177, 311, 683, 935, 1204
PsyI	GACNNNGTC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	337
RseI	CAYNNNNRTG	3 cut(s)	869, 1134, 1212
Rsr2I	CGGWCCG	1 cut(s)	177
RsrII	CGGWCCG	1 cut(s)	177
SapI	GCTCTTC	2 cut(s)	287, 345
SaqAI	TTAA	6 cut(s)	285, 321, 1019, 1053, 1062, 1422
SatI	GCNGC	6 cut(s)	73, 119, 338, 1308, 1311, 1385
Sau3AI	GATC	5 cut(s)	41, 60, 159, 468, 595
Sau96I	GGNCC	6 cut(s)	172, 177, 311, 683, 935, 1204
SchI	GAGTC	2 cut(s)	50, 257
ScrFI	CCNGG	3 cut(s)	201, 640, 1304
SduI	GDGCHC	1 cut(s)	782
SfaNI	GCATC	5 cut(s)	114, 255, 865, 1035, 1268
SfcI	CTRYAG	1 cut(s)	678
SfoI	GGCGCC	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	944
SinI	GGWCC	4 cut(s)	172, 177, 311, 935
SmiMI	CAYNNNNRTG	3 cut(s)	869, 1134, 1212
SmlI	CTYRAG	2 cut(s)	320, 416
SmoI	CTYRAG	2 cut(s)	320, 416
SphI	GCATGC	1 cut(s)	1259
SsiI	CCGC	6 cut(s)	180, 297, 421, 428, 811, 1143
SspDI	GGCGCC	1 cut(s)	256
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	3 cut(s)	515, 603, 1226
StyD4I	CCNGG	3 cut(s)	199, 638, 1302
StyI	CCWWGG	2 cut(s)	1154, 1376
TaaI	ACNGT	2 cut(s)	502, 971
TaqI	TCGA	4 cut(s)	59, 158, 786, 944
TfiI	GAWTC	6 cut(s)	5, 85, 155, 894, 1084, 1123
Tru1I	TTAA	6 cut(s)	285, 321, 1019, 1053, 1062, 1422
Tru9I	TTAA	6 cut(s)	285, 321, 1019, 1053, 1062, 1422
TscAI	CASTG	1 cut(s)	1095
TseFI	GTSAC	2 cut(s)	31, 437
TseI	GCWGC	6 cut(s)	72, 118, 337, 1307, 1310, 1384
Tsp45I	GTSAC	2 cut(s)	31, 437
TspDTI	ATGAA	2 cut(s)	402, 1118
TspGWI	ACGGA	2 cut(s)	324, 841
TspRI	CASTG	1 cut(s)	1095
Tth111I	GACNNNGTC	1 cut(s)	215
Vha464I	CTTAAG	1 cut(s)	320
VneI	GTGCAC	1 cut(s)	778
VpaK11BI	GGWCC	4 cut(s)	172, 177, 311, 935
VspI	ATTAAT	1 cut(s)	285
XagI	CCTNNNNNAGG	1 cut(s)	564
XapI	RAATTY	4 cut(s)	389, 801, 1230, 1400
XbaI	TCTAGA	1 cut(s)	1225
XceI	RCATGY	2 cut(s)	1052, 1259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1214
XmnI	GAANNNNTTC	2 cut(s)	393, 555
XspI	CTAG	3 cut(s)	515, 603, 1226
Zsp2I	ATGCAT	3 cut(s)	1050, 1261, 1354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.