Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Reverse (-)

65627446 .. 65628100

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0526100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCATCCCCTCTACTACTACTGTTGGTTTTTTCCATGAGTGCTAGTGCACTTTTAGTCCAAGCCAGTTATGTGAAAGAAACCCGAATGGTCTTGTACTTCCAAGACATCTCGACAGGTCCAAATGCCACAAGCATACCAATTGCAGGCATTGCCGGAAAGCTTTGGACCTTCACTCAGTTTGGAACAGTTTATGTCACTGACGACACCATGACCGCAGGTCCAAGCCCAAAGTCAGCCGTAGTTGGCCGGGCACAAGGCGTGTCGGTGGCAGCAGCGCTAGACGGGAGTAATGCCCTTGTCTTGGTATCGCTTGTGTTCACAAATAGGGAGTACAATGGTAGCACTATAGAGATACAAGGAAACAGTAAGCAATTCGAGTCTGTCAGAGAGGTTGCAGTGGTATCAGGTACCGGGAAATTCAGGTTTGCTAGGGGATATGCTACCTTTGAATCGTACTTCGTGGATCTTCCGAGTGCCTACTCAATATTACGGTGCAATGTTACAGTGCAACATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

173

Amino Acids

18.56

Weight (kDa)

7.82

Isoelectric Point (pI)

25.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	28 - 170	6.4e-47	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	410
AciI	CCGC	1 cut(s)	216
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	419
AfaI	GTAC	4 cut(s)	98, 335, 412, 458
AfeI	AGCGCT	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	146, 304
AgsI	TTSAA	1 cut(s)	452
AhdI	GACNNNNNGTC	1 cut(s)	219
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw21I	GWGCWC	1 cut(s)	52
Alw44I	GTGCAC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	474
Aor51HI	AGCGCT	1 cut(s)	279
AoxI	GGCC	1 cut(s)	247
ApaLI	GTGCAC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	272, 275
ApoI	RAATTY	1 cut(s)	419
Asp718I	GGTACC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	3 cut(s)	119, 168, 221
AsuC2I	CCSGG	2 cut(s)	251, 415
AvaII	GGWCC	3 cut(s)	119, 168, 221
BaeGI	GKGCMC	2 cut(s)	52, 256
BanI	GGYRCC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	284, 287
BceAI	ACGGC	1 cut(s)	224
BcnI	CCSGG	2 cut(s)	251, 415
BfaI	CTAG	4 cut(s)	45, 281, 432, 520
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	273, 276
BlsI	GCNGC	2 cut(s)	274, 277
Bme1390I	CCNGG	2 cut(s)	251, 415
Bme18I	GGWCC	3 cut(s)	119, 168, 221
BmeRI	GACNNNNNGTC	1 cut(s)	219
BmgT120I	GGNCC	3 cut(s)	119, 168, 221
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	251, 415
BmsI	GCATC	1 cut(s)	14
BpuMI	CCSGG	2 cut(s)	251, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 304
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	150, 505
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	146, 304
BseMI	GCAATG	2 cut(s)	150, 505
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	66
BseSI	GKGCMC	2 cut(s)	52, 256
BseXI	GCAGC	2 cut(s)	284, 287
BshFI	GGCC	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	3 cut(s)	156, 250, 414
BslI	CCNNNNNNNGG	2 cut(s)	146, 304
BsnI	GGCC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	52, 256
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	410
BsrDI	GCAATG	2 cut(s)	150, 505
BsrI	ACTGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	466
Bst4CI	ACNGT	5 cut(s)	24, 190, 368, 495, 508
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	5
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	249, 413
BstSFI	CTRYAG	1 cut(s)	348
BstSLI	GKGCMC	2 cut(s)	52, 256
BstV1I	GCAGC	2 cut(s)	284, 287
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	198, 405, 513
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	148
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	119, 168, 221
Csp6I	GTAC	4 cut(s)	97, 334, 411, 457
CviAII	CATG	2 cut(s)	37, 211
CviJI	RGCY	5 cut(s)	65, 163, 228, 239, 249
CviKI_1	RGCY	5 cut(s)	65, 163, 228, 239, 249
CviQI	GTAC	4 cut(s)	97, 334, 411, 457
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DriI	GACNNNNNGTC	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	247
Eam1105I	GACNNNNNGTC	1 cut(s)	219
Eco47I	GGWCC	3 cut(s)	119, 168, 221
Eco47III	AGCGCT	1 cut(s)	279
FaeI	CATG	2 cut(s)	40, 214
FaiI	YATR	7 cut(s)	38, 72, 137, 195, 212, 350, 441
FatI	CATG	2 cut(s)	36, 210
Fnu4HI	GCNGC	2 cut(s)	273, 276
Fsp4HI	GCNGC	2 cut(s)	273, 276
FspBI	CTAG	4 cut(s)	45, 281, 432, 520
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	273, 276
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	3 cut(s)	156, 250, 414
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	40, 214
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	380, 452
HpaII	CCGG	3 cut(s)	156, 250, 414
Hpy166II	GTNNAC	2 cut(s)	50, 321
Hpy188I	TCNGA	2 cut(s)	389, 474
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	50, 321
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	5 cut(s)	24, 190, 368, 495, 508
HpyCH4V	TGCA	5 cut(s)	50, 146, 398, 498, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	40, 214
HspAI	GCGC	1 cut(s)	278
KpnI	GGTACC	1 cut(s)	414
Kzo9I	GATC	1 cut(s)	466
LpnPI	CCDG	9 cut(s)	79, 102, 132, 169, 204, 263, 393, 409, 427
Lsp1109I	GCAGC	2 cut(s)	284, 287
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	4 cut(s)	45, 281, 432, 520
MaeIII	GTNAC	2 cut(s)	196, 502
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	1 cut(s)	461
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	2 cut(s)	52, 256
MluCI	AATT	3 cut(s)	141, 374, 419
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	2 cut(s)	21, 385
MspI	CCGG	3 cut(s)	156, 250, 414
MspR9I	CCNGG	2 cut(s)	251, 415
MunI	CAATTG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	2 cut(s)	251, 415
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	2 cut(s)	40, 214
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	274, 277
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	3 cut(s)	119, 168, 221
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	4 cut(s)	98, 335, 412, 458
RsaNI	GTAC	4 cut(s)	97, 334, 411, 457
SatI	GCNGC	2 cut(s)	273, 276
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	3 cut(s)	119, 168, 221
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	251, 415
SduI	GDGCHC	2 cut(s)	52, 256
SetI	ASST	8 cut(s)	121, 165, 173, 223, 396, 412, 428, 449
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	3 cut(s)	119, 168, 221
Sse9I	AATT	3 cut(s)	141, 374, 419
SsiI	CCGC	1 cut(s)	216
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	4 cut(s)	45, 281, 432, 520
StyD4I	CCNGG	2 cut(s)	249, 413
TaaI	ACNGT	5 cut(s)	24, 190, 368, 495, 508
TaqI	TCGA	2 cut(s)	113, 378
TasI	AATT	3 cut(s)	141, 374, 419
TatI	WGTACW	2 cut(s)	96, 333
TfiI	GAWTC	1 cut(s)	452
TscAI	CASTG	3 cut(s)	205, 405, 513
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	272, 275
Tsp45I	GTSAC	1 cut(s)	196
TspRI	CASTG	3 cut(s)	205, 405, 513
VneI	GTGCAC	1 cut(s)	48
VpaK11BI	GGWCC	3 cut(s)	119, 168, 221
XapI	RAATTY	1 cut(s)	419
XspI	CTAG	4 cut(s)	45, 281, 432, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.