Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Reverse (-)

22957189 .. 22962207

Gene Structure 5019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG122600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGGGAGACCTCCAGCTCCCCATCCCCGGCCAACGCAACGTCCTCATCACCAGCGCGCTGCCGTACGTCAACAACGTCCCTCATCTCGGCAACATCATCGGCTGCGTTCTCAGCGCCGACGTCTTCGCTCGCTACTGCCGTCTCCGGGGATACAACACCCTCTATATCTGCGGCACTGATGAGTACGGCACCGCCACCGAGACCAAAGCCATGGAGGACAAGTGTAGCCCCAAGGAGATCTGCGATAAGTACCACGCGATTCATCGGCAGGTGTATGACTGGTTCAATATAAGTTTTGACCAATTCGGCCGAACTTCGACGCCGGAGCAGACGGAGGTGTGCCAAGCCATTTTCAATAGGCTGCTGGAGAATAATTGGCTCTCTGACAACACAATGCAGCAGCTCTACTGTGATACTTGCACACGGTTTTTAGCAGACAGGCTCGTGGAGGGGACGTGCCCAATGCAAGGCTGTGATTATACTTCTGCAAGAGGAGATCAGTGTGAGAACTGTGGAAAGCTTTTAAACCCTACCGAATTAAAGGATCCAAAGTGTAAGGTCTGTAAGTCGACTCCACGGATTCGTGATACAAATCATTTGTTTCTGGAATTGCCTTTGCTGAAGGATAGGTTGGAAGAGTATATCAATAAAATGTCAGTGGAGGGGTCTTGGAGCCAGAATGCCATTCAAGCGACAAATGCGTGGCTCAGAGAGGGGCTTAAACAACGGTGTATCACCAGGGATCTGAAGTGGGGGGTTCCAGTTCCACATGATAACTTCAGGGACAAGGTTTTCTATGTGTGGTTTGATGCGCCTATTGGATATGTTTCAATTACTAAATGCTACACTCCAGATTGGGAGAAATGGTGGAAGAATCCAGAGGATGTGGAGTTGTATCAGTTTATGGGCAAAGATAATGTGCCATTCCACACGGTGATGTTTCCTTCCACACTTCTTGGAACTGGTGAAAATTGGACTTTAATGAAGACAATTAGTGTTACTGAATACTTGAACTATGAAGCAGGAAAGTTTTCCAAGAGTAAAGGGATTGGAGTATTTGGAAACGATGCCAAAGATACAAACATTCCTGTTGAAGTATGGCGATATTACTTGCTAACCAATAGGCCCGAGGTGTCGGATACATTATTTACATGGGCGGATTTGCAAGCGAAGCTCAACAGTGAATTGCTGAATAATTTGGGCAACTTCATTAACCGAGTTTTGAGTTTTGTTGCCAAACCTTCAGGTCAAGGATATGACTCCATTATTCCAGATGCTCAAGATGCTATCTCTGATCCTTTGACAGAGAAAATAGCTGAGAAAGTGGGTAAATATGTGGAGCAATACGTAGAGGCCATGGAGAAGGTAAAACTAAAGCAAGGACTCAAACTAGCAATGAGCATTTCTAGTGAAGGGAATGCATATCTGCAAGAAAGTCGGTTCTGGAAGCTTTACAAGGAAGACCAACCTCGCTGCTCCATTGTTATGAGAACTGCAGTGGGGCTAGTGCATCTTCTTGCTTGCTTATTAGAACCCTTCATGCCATCGTTTTCTGTTAAGGTATTTAAGCAGCTTAATCTGCCTCCTGAGACGCACATATCACTCTGTGATGATAAAGGTGATACTGATAGGGCAAGACGGCCATGGGAGATTGTACCTAGAGGTCACAAGATTGGGAAACCAGAGCCGTTGTTCAAGGAATTGAATAATGATGAAGTAGATTCTCTAAGGAAGAAGTTTGCTGGAAGTCAGGCCGATAGAAAGGAAAGGGAAGAAGCTGAAGCAGTGAAGTTGGCTGAGCAGCTCAAGAAATCAAAAGTTTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

609

Amino Acids

69.64

Weight (kDa)

6.23

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	14 - 408	1.3e-154	tRNA synthetases class I (M)
tRNA-synt_1	PF00133	16 - 257	1.3e-08	tRNA synthetases class I (I, L, M and V)
Anticodon_3	PF19303	435 - 584	2.3e-19	Anticodon binding domain of methionyl tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
AatII	GACGTC	1 cut(s)	123
Acc36I	ACCTGC	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	569
AccII	CGCG	2 cut(s)	56, 257
AciI	CCGC	3 cut(s)	171, 192, 1157
AclWI	GGATC	4 cut(s)	539, 552, 750, 1289
AcoI	YGGCCR	3 cut(s)	28, 307, 1640
AcuI	CTGAAG	5 cut(s)	641, 763, 767, 1227, 1800
AcyI	GRCGYC	2 cut(s)	120, 320
AdeI	CACNNNGTG	2 cut(s)	934, 1607
AfaI	GTAC	4 cut(s)	65, 185, 251, 1656
AfiI	CCNNNNNNNGG	4 cut(s)	26, 86, 145, 467
AgsI	TTSAA	8 cut(s)	286, 355, 689, 831, 1012, 1094, 1696, 1705
AjiI	CACGTC	1 cut(s)	456
AjnI	CCWGG	1 cut(s)	737
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	9 cut(s)	16, 403, 520, 1174, 1316, 1450, 1573, 1778, 1804
AluI	AGCT	9 cut(s)	16, 403, 520, 1174, 1316, 1450, 1573, 1778, 1804
Alw26I	GTCTC	3 cut(s)	146, 194, 1583
AlwI	GGATC	4 cut(s)	539, 552, 750, 1289
Ama87I	CYCGRG	1 cut(s)	1127
AoxI	GGCC	6 cut(s)	28, 307, 1124, 1353, 1640, 1752
ApeKI	GCWGC	8 cut(s)	58, 102, 361, 397, 400, 1473, 1570, 1801
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspLEI	GCGC	4 cut(s)	56, 58, 116, 814
AspS9I	GGNCC	1 cut(s)	1125
AsuC2I	CCSGG	2 cut(s)	27, 146
AsuHPI	GGTGA	5 cut(s)	40, 727, 946, 977, 1631
AvaI	CYCGRG	1 cut(s)	1127
BaeGI	GKGCMC	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	544
BanI	GGYRCC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	443
BbsI	GAAGAC	3 cut(s)	115, 992, 1467
BbvI	GCAGC	8 cut(s)	45, 89, 348, 409, 412, 1460, 1582, 1813
BccI	CCATC	2 cut(s)	29, 1552
BceAI	ACGGC	5 cut(s)	46, 123, 202, 1655, 1672
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 1418, 1452
BciT130I	CCWGG	1 cut(s)	739
BciVI	GTATCC	2 cut(s)	143, 1132
BcnI	CCSGG	2 cut(s)	27, 146
BcoDI	GTCTC	3 cut(s)	146, 194, 1583
BfaI	CTAG	4 cut(s)	1391, 1407, 1505, 1659
BfmI	CTRYAG	1 cut(s)	1494
BfoI	RGCGCY	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	259
BfuI	GTATCC	2 cut(s)	143, 1132
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	9 cut(s)	59, 103, 172, 362, 398, 401, 1474, 1571, 1802
BlpI	GCTNAGC	1 cut(s)	1797
BlsI	GCNGC	9 cut(s)	60, 104, 173, 363, 399, 402, 1475, 1572, 1803
Bme1390I	CCNGG	3 cut(s)	27, 146, 739
BmeT110I	CYCGRG	1 cut(s)	1127
BmgBI	CACGTC	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	1125
BmiI	GGNNCC	4 cut(s)	190, 546, 674, 759
BmrFI	CCNGG	3 cut(s)	27, 146, 739
BmsI	GCATC	5 cut(s)	799, 1057, 1264, 1273, 1519
BpiI	GAAGAC	3 cut(s)	115, 992, 1467
BpmI	CTGGAG	2 cut(s)	386, 834
Bpu1102I	GCTNAGC	1 cut(s)	1797
BpuEI	CTTGAG	2 cut(s)	1263, 1790
BpuMI	CCSGG	2 cut(s)	27, 146
BsaAI	YACGTR	1 cut(s)	1348
BsaBI	GATNNNNATC	1 cut(s)	591
BsaHI	GRCGYC	2 cut(s)	120, 320
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	9 cut(s)	25, 145, 210, 231, 575, 738, 1128, 1356, 1643
BsaXI	ACNNNNNCTCC	6 cut(s)	206, 236, 440, 470, 851, 881
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 86, 145, 467
Bse1I	ACTGG	3 cut(s)	284, 761, 967
Bse3DI	GCAATG	1 cut(s)	1401
Bse8I	GATNNNNATC	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	739
BseDI	CCNNGG	9 cut(s)	25, 145, 210, 231, 575, 738, 1128, 1356, 1643
BseGI	GGATG	2 cut(s)	21, 889
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	4 cut(s)	26, 86, 145, 467
BseMI	GCAATG	1 cut(s)	1401
BseMII	CTCAG	5 cut(s)	124, 721, 1308, 1578, 1788
BseNI	ACTGG	3 cut(s)	284, 761, 967
BsePI	GCGCGC	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	507
BseSI	GKGCMC	1 cut(s)	461
BseX3I	CGGCCG	1 cut(s)	307
BseXI	GCAGC	8 cut(s)	45, 89, 348, 409, 412, 1460, 1582, 1813
Bsh1236I	CGCG	2 cut(s)	56, 257
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	6 cut(s)	30, 309, 1126, 1355, 1642, 1754
BshNI	GGYRCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	1127
BsiSI	CCGG	3 cut(s)	27, 145, 323
BsiWI	CGTACG	1 cut(s)	63
BslFI	GGGAC	3 cut(s)	62, 466, 797
BslI	CCNNNNNNNGG	4 cut(s)	26, 86, 145, 467
BsmAI	GTCTC	3 cut(s)	146, 194, 1583
BsmBI	CGTCTC	2 cut(s)	146, 1583
BsmFI	GGGAC	3 cut(s)	62, 466, 797
BsmI	GAATGC	2 cut(s)	685, 1423
BsnI	GGCC	6 cut(s)	30, 309, 1126, 1355, 1642, 1754
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	1127
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	5 cut(s)	237, 496, 544, 742, 1294
Bsp1720I	GCTNAGC	1 cut(s)	1797
Bsp19I	CCATGG	3 cut(s)	210, 1356, 1643
BspACI	CCGC	3 cut(s)	171, 192, 1157
BspANI	GGCC	6 cut(s)	30, 309, 1126, 1355, 1642, 1754
BspCNI	CTCAG	5 cut(s)	123, 720, 1309, 1579, 1789
BspFNI	CGCG	2 cut(s)	56, 257
BspLI	GGNNCC	4 cut(s)	190, 546, 674, 759
BspMAI	CTGCAG	1 cut(s)	1498
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	4 cut(s)	539, 552, 750, 1289
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	1401
BsrI	ACTGG	3 cut(s)	284, 761, 967
BssECI	CCNNGG	9 cut(s)	25, 145, 210, 231, 575, 738, 1128, 1356, 1643
BssHII	GCGCGC	1 cut(s)	54
BssMI	GATC	5 cut(s)	237, 496, 544, 742, 1294
BssNI	GRCGYC	2 cut(s)	120, 320
BssSI	CACGAG	1 cut(s)	443
BssT1I	CCWWGG	4 cut(s)	210, 231, 1356, 1643
Bst2BI	CACGAG	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	739
Bst4CI	ACNGT	6 cut(s)	410, 426, 512, 729, 934, 1181
Bst6I	CTCTTC	1 cut(s)	630
BstACI	GRCGYC	2 cut(s)	120, 320
BstBAI	YACGTR	1 cut(s)	1348
BstC8I	GCNNGC	4 cut(s)	56, 130, 1167, 1522
BstDEI	CTNAG	6 cut(s)	110, 707, 1317, 1587, 1727, 1797
BstDSI	CCRYGG	4 cut(s)	210, 575, 1356, 1643
BstF5I	GGATG	2 cut(s)	21, 889
BstFNI	CGCG	2 cut(s)	56, 257
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	4 cut(s)	56, 58, 116, 814
BstKTI	GATC	5 cut(s)	240, 499, 547, 745, 1297
BstMAI	GTCTC	3 cut(s)	146, 194, 1583
BstMBI	GATC	5 cut(s)	237, 496, 544, 742, 1294
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 689, 698, 1171, 1283, 1579
BstNI	CCWGG	1 cut(s)	739
BstSCI	CCNGG	3 cut(s)	25, 144, 737
BstSFI	CTRYAG	1 cut(s)	1494
BstSLI	GKGCMC	1 cut(s)	461
BstSNI	TACGTA	1 cut(s)	1348
BstUI	CGCG	2 cut(s)	56, 257
BstV1I	GCAGC	8 cut(s)	45, 89, 348, 409, 412, 1460, 1582, 1813
BstV2I	GAAGAC	3 cut(s)	115, 992, 1467
BstX2I	RGATCY	3 cut(s)	237, 544, 742
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	3 cut(s)	237, 544, 742
BstZI	CGGCCG	1 cut(s)	307
BsuI	GTATCC	2 cut(s)	143, 1132
BsuRI	GGCC	6 cut(s)	30, 309, 1126, 1355, 1642, 1754
BtgI	CCRYGG	4 cut(s)	210, 575, 1356, 1643
BtrI	CACGTC	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	21, 889
BtsI	GCAGTG	2 cut(s)	1503, 1791
BtsIMutI	CAGTG	6 cut(s)	174, 506, 663, 1186, 1503, 1791
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	4 cut(s)	56, 130, 1167, 1522
CfoI	GCGC	4 cut(s)	56, 58, 116, 814
Cfr13I	GGNCC	1 cut(s)	1125
CseI	GACGC	2 cut(s)	328, 1600
Csp6I	GTAC	4 cut(s)	64, 184, 250, 1655
CspCI	CAANNNNNGTGG	2 cut(s)	937, 972
CviAII	CATG	6 cut(s)	211, 770, 1152, 1357, 1540, 1644
CviQI	GTAC	4 cut(s)	64, 184, 250, 1655
DdeI	CTNAG	6 cut(s)	110, 707, 1317, 1587, 1727, 1797
DpnI	GATC	5 cut(s)	239, 498, 546, 744, 1296
DpnII	GATC	5 cut(s)	237, 496, 544, 742, 1294
DraI	TTTAAA	1 cut(s)	525
DraIII	CACNNNGTG	2 cut(s)	934, 1607
EaeI	YGGCCR	3 cut(s)	28, 307, 1640
EagI	CGGCCG	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
EciI	GGCGGA	1 cut(s)	1172
EclXI	CGGCCG	1 cut(s)	307
Eco105I	TACGTA	1 cut(s)	1348
Eco130I	CCWWGG	4 cut(s)	210, 231, 1356, 1643
Eco31I	GGTCTC	1 cut(s)	194
Eco52I	CGGCCG	1 cut(s)	307
Eco57I	CTGAAG	5 cut(s)	641, 763, 767, 1227, 1800
Eco88I	CYCGRG	1 cut(s)	1127
EcoRII	CCWGG	1 cut(s)	737
EcoT14I	CCWWGG	4 cut(s)	210, 231, 1356, 1643
EcoT22I	ATGCAT	1 cut(s)	1423
ErhI	CCWWGG	4 cut(s)	210, 231, 1356, 1643
Esp3I	CGTCTC	2 cut(s)	146, 1583
FaeI	CATG	6 cut(s)	214, 773, 1155, 1360, 1543, 1647
FaqI	GGGAC	3 cut(s)	62, 466, 797
FatI	CATG	6 cut(s)	210, 769, 1151, 1356, 1539, 1643
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	9 cut(s)	59, 103, 172, 362, 398, 401, 1474, 1571, 1802
FokI	GGATG	2 cut(s)	8, 896
Fsp4HI	GCNGC	9 cut(s)	59, 103, 172, 362, 398, 401, 1474, 1571, 1802
FspBI	CTAG	4 cut(s)	1391, 1407, 1505, 1659
GlaI	GCGC	4 cut(s)	55, 57, 115, 813
GluI	GCNGC	9 cut(s)	59, 103, 172, 362, 398, 401, 1474, 1571, 1802
GsuI	CTGGAG	2 cut(s)	386, 834
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	6 cut(s)	30, 309, 1126, 1355, 1642, 1754
HapII	CCGG	3 cut(s)	27, 145, 323
HgaI	GACGC	2 cut(s)	328, 1600
HhaI	GCGC	4 cut(s)	56, 58, 116, 814
Hin1I	GRCGYC	2 cut(s)	120, 320
Hin1II	CATG	6 cut(s)	214, 773, 1155, 1360, 1543, 1647
Hin6I	GCGC	4 cut(s)	54, 56, 114, 812
HinP1I	GCGC	4 cut(s)	54, 56, 114, 812
HincII	GTYRAC	2 cut(s)	70, 570
HindII	GTYRAC	2 cut(s)	70, 570
HindIII	AAGCTT	2 cut(s)	518, 1448
HinfI	GANTC	7 cut(s)	259, 571, 580, 874, 1259, 1383, 1721
HpaII	CCGG	3 cut(s)	27, 145, 323
HphI	GGTGA	5 cut(s)	40, 727, 946, 977, 1631
Hpy166II	GTNNAC	2 cut(s)	70, 570
Hpy188I	TCNGA	5 cut(s)	385, 710, 747, 1138, 1294
Hpy188III	TCNNGA	9 cut(s)	584, 605, 851, 878, 1271, 1280, 1444, 1586, 1807
Hpy8I	GTNNAC	2 cut(s)	70, 570
Hpy99I	CGWCG	2 cut(s)	122, 322
HpyAV	CCTTC	6 cut(s)	616, 954, 1251, 1357, 1406, 1546
HpyCH4III	ACNGT	6 cut(s)	410, 426, 512, 729, 934, 1181
HpyCH4IV	ACGT	6 cut(s)	39, 66, 75, 120, 455, 1347
HpyCH4V	TGCA	9 cut(s)	397, 420, 466, 488, 1165, 1421, 1429, 1496, 1510
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 689, 698, 1171, 1283, 1579
HpyF3I	CTNAG	6 cut(s)	110, 707, 1317, 1587, 1727, 1797
HpySE526I	ACGT	6 cut(s)	39, 66, 75, 120, 455, 1347
Hsp92I	GRCGYC	2 cut(s)	120, 320
Hsp92II	CATG	6 cut(s)	214, 773, 1155, 1360, 1543, 1647
HspAI	GCGC	4 cut(s)	54, 56, 114, 812
Kzo9I	GATC	5 cut(s)	237, 496, 544, 742, 1294
LmnI	GCTCC	5 cut(s)	21, 325, 672, 1339, 1481
Lsp1109I	GCAGC	8 cut(s)	45, 89, 348, 409, 412, 1460, 1582, 1813
LweI	GCATC	5 cut(s)	799, 1057, 1264, 1273, 1519
MaeI	CTAG	4 cut(s)	1391, 1407, 1505, 1659
MaeII	ACGT	6 cut(s)	39, 66, 75, 120, 455, 1347
MaeIII	GTNAC	2 cut(s)	997, 1664
MalI	GATC	5 cut(s)	239, 498, 546, 744, 1296
MboI	GATC	5 cut(s)	237, 496, 544, 742, 1294
MboII	GAAGA	8 cut(s)	115, 647, 883, 997, 1472, 1505, 1744, 1784
MflI	RGATCY	3 cut(s)	237, 544, 742
MhlI	GDGCHC	1 cut(s)	461
MlyI	GAGTC	3 cut(s)	565, 1253, 1377
MmeI	TCCRAC	2 cut(s)	612, 1116
Mph1103I	ATGCAT	1 cut(s)	1423
MroXI	GAANNNNTTC	1 cut(s)	1030
MseI	TTAA	8 cut(s)	524, 539, 720, 980, 1212, 1557, 1566, 1575
MslI	CAYNNNNRTG	2 cut(s)	935, 1484
MspI	CCGG	3 cut(s)	27, 145, 323
MspR9I	CCNGG	3 cut(s)	27, 146, 739
Mva1269I	GAATGC	2 cut(s)	685, 1423
MvaI	CCWGG	1 cut(s)	739
MvnI	CGCG	2 cut(s)	56, 257
MwoI	GCNNNNNNNGC	6 cut(s)	111, 689, 698, 1171, 1283, 1579
NciI	CCSGG	2 cut(s)	27, 146
NcoI	CCATGG	3 cut(s)	210, 1356, 1643
NdeII	GATC	5 cut(s)	237, 496, 544, 742, 1294
NlaIII	CATG	6 cut(s)	214, 773, 1155, 1360, 1543, 1647
NlaIV	GGNNCC	4 cut(s)	190, 546, 674, 759
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	1664
NsiI	ATGCAT	1 cut(s)	1423
PaqCI	CACCTGC	1 cut(s)	259
PauI	GCGCGC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 136
PctI	GAATGC	2 cut(s)	685, 1423
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	4 cut(s)	259, 580, 874, 1721
Pfl23II	CGTACG	1 cut(s)	63
PkrI	GCNGC	9 cut(s)	60, 104, 173, 363, 399, 402, 1475, 1572, 1803
PleI	GAGTC	3 cut(s)	565, 1253, 1377
PpsI	GAGTC	3 cut(s)	565, 1253, 1377
Ppu21I	YACGTR	1 cut(s)	1348
Psp6I	CCWGG	1 cut(s)	737
PspGI	CCWGG	1 cut(s)	737
PspLI	CGTACG	1 cut(s)	63
PspN4I	GGNNCC	4 cut(s)	190, 546, 674, 759
PspPI	GGNCC	1 cut(s)	1125
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
PstI	CTGCAG	1 cut(s)	1498
PsuI	RGATCY	3 cut(s)	237, 544, 742
PteI	GCGCGC	1 cut(s)	54
RsaI	GTAC	4 cut(s)	65, 185, 251, 1656
RsaNI	GTAC	4 cut(s)	64, 184, 250, 1655
RseI	CAYNNNNRTG	2 cut(s)	935, 1484
SalI	GTCGAC	1 cut(s)	568
SaqAI	TTAA	8 cut(s)	524, 539, 720, 980, 1212, 1557, 1566, 1575
SatI	GCNGC	9 cut(s)	59, 103, 172, 362, 398, 401, 1474, 1571, 1802
Sau3AI	GATC	5 cut(s)	237, 496, 544, 742, 1294
Sau96I	GGNCC	1 cut(s)	1125
SchI	GAGTC	3 cut(s)	565, 1253, 1377
ScrFI	CCNGG	3 cut(s)	27, 146, 739
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	5 cut(s)	799, 1057, 1264, 1273, 1519
SfcI	CTRYAG	1 cut(s)	1494
SmiMI	CAYNNNNRTG	2 cut(s)	935, 1484
SmlI	CTYRAG	2 cut(s)	1278, 1805
SmoI	CTYRAG	2 cut(s)	1278, 1805
SnaBI	TACGTA	1 cut(s)	1348
SsiI	CCGC	3 cut(s)	171, 192, 1157
SspMI	CTAG	4 cut(s)	1391, 1407, 1505, 1659
StyD4I	CCNGG	3 cut(s)	25, 144, 737
StyI	CCWWGG	4 cut(s)	210, 231, 1356, 1643
TaaI	ACNGT	6 cut(s)	410, 426, 512, 729, 934, 1181
TaiI	ACGT	6 cut(s)	42, 69, 78, 123, 458, 1350
TaqI	TCGA	2 cut(s)	317, 569
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	4 cut(s)	259, 580, 874, 1721
Tru1I	TTAA	8 cut(s)	524, 539, 720, 980, 1212, 1557, 1566, 1575
Tru9I	TTAA	8 cut(s)	524, 539, 720, 980, 1212, 1557, 1566, 1575
TscAI	CASTG	6 cut(s)	181, 506, 663, 1186, 1503, 1791
TseFI	GTSAC	1 cut(s)	1664
TseI	GCWGC	8 cut(s)	58, 102, 361, 397, 400, 1473, 1570, 1801
Tsp45I	GTSAC	1 cut(s)	1664
TspDTI	ATGAA	6 cut(s)	251, 998, 1032, 1198, 1528, 1728
TspGWI	ACGGA	2 cut(s)	347, 592
TspRI	CASTG	6 cut(s)	181, 506, 663, 1186, 1503, 1791
XmiI	GTMKAC	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	4 cut(s)	1391, 1407, 1505, 1659
ZraI	GACGTC	1 cut(s)	121
Zsp2I	ATGCAT	1 cut(s)	1423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.