pycom10g13910

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
17380237 .. 17381500
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g13910.2

Sequence Viewer

Length: 669 bp
ATGTGGGCAGACTTACAAGTAAAACTAAAAGCTGAGTTGCTGAATAATTTGGGAAATTTCATTAACCGAGTATTGAGCTTCATTGCAAAACCTCAAGGACAAGGATATGGATCTATTATTCCTAACGGTTCTGGGGCGGAATCACATTCCTTGACGAAAATATTGGCGGAGAGAATCGGTATATATGTTGATCAATACATAGAAGCAATGGAGAAGGTCAAGCTAAAGCAAGCACTGAAAATTGCAATGAGCGTATCCAGTGAAGGCAATGCATATTTGCAAGAGAGCAAGTTCTGGCGACTTTACAAACAGGATCAAGCTTCCTGCTCTCTTGTCATCAAAACTTCTGCAGGACTCATTTACCTTCTCGCGTGCTTGCTGGAACCTTTCATGCCTTCATTTTCTCTCAAGGTGCTAAAGCAGCTCAATTTGCCAACCGAAAATCAGTTTTCGCTTTGCGATAAGGATGTTGAAAGGGCAAGAAAGCCTTGGGAAATATTACCTGCTGGTCACAAGATTGGGACACCAGAGCCTTCGTTCAAAGAATTGAAAGATGAAGATGTGGAGTTCTTTAGGAAGAAGTTTTTTGGAAGTCAAGCTGAAAGGGTTGCTAAGGGAGAAGCTGAAGCAAAGAAAATGGCTGAGATATTGGATGAAACAAAAAATTGA

Protein Analysis

223

Amino Acids

24.99

Weight (kDa)

8.61

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 511
AccII CGCG 1 cut(s) 371
AciI CCGC 2 cut(s) 137, 167
AclWI GGATC 2 cut(s) 118, 321
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 645
AgsI TTSAA 3 cut(s) 473, 541, 550
AluBI AGCT 7 cut(s) 32, 78, 223, 320, 424, 599, 623
AluI AGCT 7 cut(s) 32, 78, 223, 320, 424, 599, 623
AlwI GGATC 2 cut(s) 118, 321
ApeKI GCWGC 1 cut(s) 421
ApoI RAATTY 1 cut(s) 55
BbvI GCAGC 1 cut(s) 433
BciVI GTATCC 1 cut(s) 265
BclI TGATCA 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 511
BfuI GTATCC 1 cut(s) 265
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
BmiI GGNNCC 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 612
BpuEI CTTGAG 2 cut(s) 78, 392
BsaBI GATNNNNATC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 258
Bse3DI GCAATG 4 cut(s) 81, 213, 252, 274
Bse8I GATNNNNATC 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 2 cut(s) 472, 658
BseJI GATNNNNATC 1 cut(s) 109
BseMI GCAATG 4 cut(s) 81, 213, 252, 274
BseMII CTCAG 2 cut(s) 24, 633
BseNI ACTGG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 433
Bsh1236I CGCG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 535
Bsp143I GATC 3 cut(s) 110, 190, 313
BspACI CCGC 2 cut(s) 137, 167
BspCNI CTCAG 2 cut(s) 25, 634
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 1 cut(s) 384
BspMAI CTGCAG 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 2 cut(s) 118, 321
BsrDI GCAATG 4 cut(s) 81, 213, 252, 274
BsrI ACTGG 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 3 cut(s) 110, 190, 313
BssT1I CCWWGG 1 cut(s) 488
Bst4CI ACNGT 1 cut(s) 128
BstC8I GCNNGC 3 cut(s) 231, 373, 377
BstDEI CTNAG 3 cut(s) 33, 612, 642
BstF5I GGATG 2 cut(s) 472, 658
BstFNI CGCG 1 cut(s) 371
BstKTI GATC 3 cut(s) 113, 193, 316
BstMBI GATC 3 cut(s) 110, 190, 313
BstMWI GCNNNNNNNGC 2 cut(s) 421, 430
BstSFI CTRYAG 1 cut(s) 348
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuI GTATCC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 472, 658
BtsIMutI CAGTG 2 cut(s) 233, 265
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 3 cut(s) 231, 373, 377
CviAII CATG 1 cut(s) 391
DdeI CTNAG 3 cut(s) 33, 612, 642
DpnI GATC 3 cut(s) 112, 192, 315
DpnII GATC 3 cut(s) 110, 190, 313
EciI GGCGGA 2 cut(s) 152, 182
Eco130I CCWWGG 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 645
EcoT14I CCWWGG 1 cut(s) 488
EcoT22I ATGCAT 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 1 cut(s) 394
FaiI YATR 7 cut(s) 108, 182, 184, 186, 200, 274, 392
FalI AAGNNNNNCTT 2 cut(s) 472, 504
FaqI GGGAC 1 cut(s) 535
FatI CATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 422
FokI GGATG 2 cut(s) 479, 665
Fsp4HI GCNGC 1 cut(s) 422
GluI GCNGC 1 cut(s) 422
Hin1II CATG 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 3 cut(s) 140, 174, 354
HpyAV CCTTC 5 cut(s) 208, 257, 374, 405, 543
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 5 cut(s) 86, 245, 272, 280, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 421, 430
HpyF3I CTNAG 3 cut(s) 33, 612, 642
Hsp92II CATG 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 3 cut(s) 110, 190, 313
Lsp1109I GCAGC 1 cut(s) 433
MaeIII GTNAC 1 cut(s) 509
MalI GATC 3 cut(s) 112, 192, 315
MboI GATC 3 cut(s) 110, 190, 313
MboII GAAGA 2 cut(s) 569, 589
MflI RGATCY 1 cut(s) 110
MluCI AATT 6 cut(s) 46, 55, 240, 427, 545, 664
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 274
MseI TTAA 1 cut(s) 63
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 421, 430
NdeII GATC 3 cut(s) 110, 190, 313
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 509
NsiI ATGCAT 1 cut(s) 274
PfeI GAWTC 2 cut(s) 140, 174
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 384
PstI CTGCAG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 110
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 3 cut(s) 110, 190, 313
SchI GAGTC 1 cut(s) 348
SfcI CTRYAG 1 cut(s) 348
SmlI CTYRAG 2 cut(s) 93, 407
SmoI CTYRAG 2 cut(s) 93, 407
Sse9I AATT 6 cut(s) 46, 55, 240, 427, 545, 664
SsiI CCGC 2 cut(s) 137, 167
SspI AATATT 2 cut(s) 162, 498
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 1 cut(s) 128
TasI AATT 6 cut(s) 46, 55, 240, 427, 545, 664
TfiI GAWTC 2 cut(s) 140, 174
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 240, 265
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 1 cut(s) 421
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 6 cut(s) 49, 70, 379, 387, 570, 669
TspRI CASTG 2 cut(s) 240, 265
XapI RAATTY 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.