Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Forward (+)

33199452 .. 33202079

Gene Structure 2628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36101.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCTTTATAGCTCTTGTTTGGTTGTGGAATCAAGAGGCAAGTTTTCTAAGAGTAGAGGCATTGGAGTTTTCGGAAACGATGCAAAACTCACAGGCATTCCAGTTGAAGTGTGGCGCTATTACTTGCTGACTAATAGGCCTGAGGGATCCGACACTGAGTTTACTTGGTCCGATTTACAGACAAAACTCAAAAGTGAGTTGGTTGGTAATTTAGGCAACTTCATCAACAGAGTTTTGAGTTTCATTGCTAAACCTCCGGGAGGATATGGTGCCATCATTCCTGAGGTTGCAGGTGCAGACTCTGATGCTTTGACACTTGAATTAGCAGAAAATGTCGGCAGACATGTAGAGCAATACATAGAAGCAATGGAGAAGCTCAAACTAAAGCAAGGGCTTAAATTAGCAATGAGTATTTCTAGCGAGGGGAATGCATATCTCCAAGGATCCCAGTTCTGGAAGCTCTACAAGGAGGACCGGCCTCGGTGCTCTATTGTCATCAAAACTTCGGTAGGGTTAGTGCATCTTCTTGCTTGCTTATTGGAACCGTACATGCCTTCATTTTCTGCTAGGGTACTTGAGCAGCTGAACTTGCCTCATGAGTCGATCAAATCCCTTTGTGATGTCAATAAAGCAAAACGGCCTTGGGAGATTGTAGCTGATGGTCACAAGATTGGGGAACCCAAAACATTATTTACGACGTTAAAAGATGAAGAAGTAGAATATCTAAGGAAGAAGTTTGGGGGAACCCAAGCTGATAGGGGAAAATGTACCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

259

Amino Acids

28.76

Weight (kDa)

8.67

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	12 - 79	1.2e-17	tRNA synthetases class I (M)
Anticodon_3	PF19303	103 - 250	1.4e-20	Anticodon binding domain of methionyl tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	269
AclWI	GGATC	4 cut(s)	141, 154, 438, 451
AfaI	GTAC	3 cut(s)	548, 573, 769
AfiI	CCNNNNNNNGG	2 cut(s)	260, 453
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	107, 320
AluBI	AGCT	6 cut(s)	12, 376, 460, 583, 656, 752
AluI	AGCT	6 cut(s)	12, 376, 460, 583, 656, 752
Alw21I	GWGCWC	1 cut(s)	488
AlwI	GGATC	4 cut(s)	141, 154, 438, 451
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	3 cut(s)	137, 476, 638
ApeKI	GCWGC	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	168, 472
AsuC2I	CCSGG	1 cut(s)	258
AvaII	GGWCC	2 cut(s)	168, 472
AxyI	CCTNAGG	2 cut(s)	141, 282
BamHI	GGATCC	2 cut(s)	146, 443
BanI	GGYRCC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	2 cut(s)	281, 653
BceAI	ACGGC	1 cut(s)	653
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BcnI	CCSGG	1 cut(s)	258
BfaI	CTAG	2 cut(s)	417, 567
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	581
BlsI	GCNGC	1 cut(s)	582
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	2 cut(s)	168, 472
BmgT120I	GGNCC	2 cut(s)	168, 472
BmiI	GGNNCC	6 cut(s)	148, 271, 445, 543, 678, 745
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	3 cut(s)	70, 295, 529
BmuI	ACTGGG	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	3 cut(s)	439, 479, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 453
Bse118I	RCCGGY	1 cut(s)	474
Bse1I	ACTGG	2 cut(s)	101, 448
Bse21I	CCTNAGG	2 cut(s)	141, 282
Bse3DI	GCAATG	3 cut(s)	243, 372, 411
BseDI	CCNNGG	3 cut(s)	439, 479, 641
BseLI	CCNNNNNNNGG	2 cut(s)	260, 453
BseMI	GCAATG	3 cut(s)	243, 372, 411
BseMII	CTCAG	3 cut(s)	132, 147, 273
BseNI	ACTGG	2 cut(s)	101, 448
BseXI	GCAGC	1 cut(s)	592
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	139, 478, 640
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	257, 475
BslI	CCNNNNNNNGG	2 cut(s)	260, 453
BsmI	GAATGC	2 cut(s)	96, 433
BsnI	GGCC	3 cut(s)	139, 478, 640
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	146, 443, 603
BspANI	GGCC	3 cut(s)	139, 478, 640
BspCNI	CTCAG	3 cut(s)	133, 148, 274
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	6 cut(s)	148, 271, 445, 543, 678, 745
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	4 cut(s)	141, 154, 438, 451
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	3 cut(s)	243, 372, 411
BsrFI	RCCGGY	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	101, 448
BssAI	RCCGGY	1 cut(s)	474
BssECI	CCNNGG	3 cut(s)	439, 479, 641
BssMI	GATC	3 cut(s)	146, 443, 603
BssT1I	CCWWGG	2 cut(s)	439, 641
Bst4CI	ACNGT	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	5 cut(s)	48, 141, 156, 282, 725
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	3 cut(s)	149, 446, 606
BstMBI	GATC	3 cut(s)	146, 443, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	589
BstNSI	RCATGY	2 cut(s)	347, 553
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	592
BstX2I	RGATCY	2 cut(s)	146, 443
BstYI	RGATCY	2 cut(s)	146, 443
Bsu36I	CCTNAGG	2 cut(s)	141, 282
BsuRI	GGCC	3 cut(s)	139, 478, 640
BtsIMutI	CAGTG	1 cut(s)	153
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	532
CaiI	CAGNNNCTG	1 cut(s)	302
CciI	TCATGA	1 cut(s)	595
CfoI	GCGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	474
Cfr13I	GGNCC	2 cut(s)	168, 472
Csp6I	GTAC	3 cut(s)	547, 572, 768
CviAII	CATG	3 cut(s)	344, 550, 596
CviQI	GTAC	3 cut(s)	547, 572, 768
DdeI	CTNAG	5 cut(s)	48, 141, 156, 282, 725
DpnI	GATC	3 cut(s)	148, 445, 605
DpnII	GATC	3 cut(s)	146, 443, 603
Eco130I	CCWWGG	2 cut(s)	439, 641
Eco147I	AGGCCT	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	168, 472
Eco81I	CCTNAGG	2 cut(s)	141, 282
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	439, 641
EcoT22I	ATGCAT	1 cut(s)	433
ErhI	CCWWGG	2 cut(s)	439, 641
FaeI	CATG	3 cut(s)	347, 553, 599
FaiI	YATR	7 cut(s)	9, 267, 345, 359, 433, 551, 597
FatI	CATG	3 cut(s)	343, 549, 595
Fnu4HI	GCNGC	1 cut(s)	581
Fsp4HI	GCNGC	1 cut(s)	581
FspBI	CTAG	2 cut(s)	417, 567
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	581
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	3 cut(s)	139, 478, 640
HapII	CCGG	2 cut(s)	257, 475
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	347, 553, 599
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	29, 299, 599
HpaII	CCGG	2 cut(s)	257, 475
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	74, 151, 172, 304
Hpy188III	TCNNGA	4 cut(s)	33, 281, 454, 596
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	700
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4IV	ACGT	1 cut(s)	698
HpyCH4V	TGCA	5 cut(s)	83, 290, 296, 431, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	589
HpyF3I	CTNAG	5 cut(s)	48, 141, 156, 282, 725
HpySE526I	ACGT	1 cut(s)	698
Hsp92II	CATG	3 cut(s)	347, 553, 599
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	146, 443, 603
LpnPI	CCDG	9 cut(s)	78, 114, 153, 270, 276, 294, 439, 461, 488
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	3 cut(s)	70, 295, 529
MaeI	CTAG	2 cut(s)	417, 567
MaeII	ACGT	1 cut(s)	698
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	3 cut(s)	148, 445, 605
MboI	GATC	3 cut(s)	146, 443, 603
MboII	GAAGA	3 cut(s)	515, 722, 742
MflI	RGATCY	2 cut(s)	146, 443
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	3 cut(s)	208, 320, 398
MlyI	GAGTC	2 cut(s)	293, 608
MmeI	TCCRAC	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	2 cut(s)	396, 701
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	2 cut(s)	257, 475
MspR9I	CCNGG	1 cut(s)	258
Mva1269I	GAATGC	2 cut(s)	96, 433
MwoI	GCNNNNNNNGC	1 cut(s)	589
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	146, 443, 603
NlaIII	CATG	3 cut(s)	347, 553, 599
NlaIV	GGNNCC	6 cut(s)	148, 271, 445, 543, 678, 745
NmuCI	GTSAC	1 cut(s)	662
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	2 cut(s)	347, 553
PagI	TCATGA	1 cut(s)	595
PaqCI	CACCTGC	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	139
PciI	ACATGT	1 cut(s)	343
PctI	GAATGC	2 cut(s)	96, 433
PfeI	GAWTC	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	582
PleI	GAGTC	2 cut(s)	293, 607
PpsI	GAGTC	2 cut(s)	293, 607
PscI	ACATGT	1 cut(s)	343
PspN4I	GGNNCC	6 cut(s)	148, 271, 445, 543, 678, 745
PspPI	GGNCC	2 cut(s)	168, 472
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	146, 443
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	3 cut(s)	548, 573, 769
RsaNI	GTAC	3 cut(s)	547, 572, 768
SaqAI	TTAA	2 cut(s)	396, 701
SatI	GCNGC	1 cut(s)	581
Sau3AI	GATC	3 cut(s)	146, 443, 603
Sau96I	GGNCC	2 cut(s)	168, 472
SchI	GAGTC	2 cut(s)	293, 608
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	488
SfaNI	GCATC	3 cut(s)	70, 295, 529
SinI	GGWCC	2 cut(s)	168, 472
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	3 cut(s)	208, 320, 398
SseBI	AGGCCT	1 cut(s)	139
SspMI	CTAG	2 cut(s)	417, 567
StuI	AGGCCT	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	439, 641
TaaI	ACNGT	1 cut(s)	546
TaiI	ACGT	1 cut(s)	701
TaqI	TCGA	1 cut(s)	602
TasI	AATT	3 cut(s)	208, 320, 398
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	396, 701
Tru9I	TTAA	2 cut(s)	396, 701
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	1 cut(s)	580
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	4 cut(s)	211, 232, 546, 723
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	168, 472
XagI	CCTNNNNNAGG	1 cut(s)	258
XceI	RCATGY	2 cut(s)	347, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XspI	CTAG	2 cut(s)	417, 567
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.