Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8251943.1

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 791

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8251943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 791 bp

gccttgccatatgttaacaacgtcccccacctcgggaacatcattggctgcgtcctgagcgccgatgtctttgctcggtactgccgtctccggggatacaataccgtctatatctccgggaccgatgagtatggcacagcgacggagaccaaagccatggaagagaagtgcagcccccaagagatatgtgacaagtatcacaaaatccatagggaggtttatgagtggttcaacataagcttcgacaaattcggccgaacttccacgccgcagcaaactgaggtctgccaacaaatcttcaagaaattgttggacagtgatcgccttgctgaaaacacaatccagcagctccattgtgactcatgcaaaagattcttggcggaccgattcgtggaggggacatgccctactcaaggatgttactatgattctgctcgaggagaccaatgtgacaagtgtggaaagcttttgaatcccacggaactgaaagatcctaaatgcaaggtatgcaaggaaactccacggattcgcaaaacaaatcacttgtttctggagctccctttgctcaaggataagttggaagactacatcaataaggcatcagtggaagggtgttggagtcagaatgcggttcaaatcacaaatgcctggctcaaagaggggcttaaacaacgttgcattacaagggatctcaagtggggtgttccggttccacacgatggcttcagggacaaggtattctacgtgtggttcgatgctcctattggatacatctccattactaagtgtta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

263

Amino Acids

30.31

Weight (kDa)

8.11

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	719
AciI	CCGC	3 cut(s)	269, 380, 629
AclI	AACGTT	1 cut(s)	673
AclWI	GGATC	2 cut(s)	485, 696
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	709
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	7 cut(s)	32, 33, 91, 214, 391, 413, 719
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	4 cut(s)	232, 301, 472, 635
AjnI	CCWGG	1 cut(s)	647
AluBI	AGCT	4 cut(s)	240, 349, 466, 556
AluI	AGCT	4 cut(s)	240, 349, 466, 556
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	3 cut(s)	92, 140, 435
AlwI	GGATC	2 cut(s)	485, 696
Ama87I	CYCGRG	2 cut(s)	32, 435
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	4 cut(s)	48, 171, 271, 346
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	120, 382
AsuC2I	CCSGG	2 cut(s)	92, 118
AvaI	CYCGRG	2 cut(s)	32, 435
AvaII	GGWCC	2 cut(s)	120, 382
BaeI	ACNNNNGTAYC	2 cut(s)	70, 103
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	4 cut(s)	35, 183, 283, 358
BccI	CCATC	1 cut(s)	713
BceAI	ACGGC	1 cut(s)	69
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	1 cut(s)	649
BciVI	GTATCC	2 cut(s)	89, 761
BcnI	CCSGG	2 cut(s)	92, 118
BcoDI	GTCTC	3 cut(s)	92, 140, 435
BfoI	RGCGCY	1 cut(s)	63
BfuI	GTATCC	2 cut(s)	89, 761
BisI	GCNGC	5 cut(s)	49, 172, 269, 272, 347
BlsI	GCNGC	5 cut(s)	50, 173, 270, 273, 348
Bme1390I	CCNGG	3 cut(s)	92, 118, 649
Bme18I	GGWCC	2 cut(s)	120, 382
BmeT110I	CYCGRG	2 cut(s)	32, 435
BmgT120I	GGNCC	2 cut(s)	120, 382
BmiI	GGNNCC	2 cut(s)	121, 711
BmrFI	CCNGG	3 cut(s)	92, 118, 649
BmsI	GCATC	2 cut(s)	608, 745
BpiI	GAAGAC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	3 cut(s)	396, 551, 677
BpuMI	CCSGG	2 cut(s)	92, 118
BsaAI	YACGTR	1 cut(s)	745
BsaI	GGTCTC	2 cut(s)	140, 435
BsaJI	CCNNGG	5 cut(s)	31, 91, 156, 477, 521
BsaWI	WCCGGW	1 cut(s)	706
Bsc4I	CCNNNNNNNGG	7 cut(s)	32, 33, 91, 214, 391, 413, 719
BseBI	CCWGG	1 cut(s)	649
BseDI	CCNNGG	5 cut(s)	31, 91, 156, 477, 521
BseGI	GGATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	7 cut(s)	32, 33, 91, 214, 391, 413, 719
BseMII	CTCAG	2 cut(s)	47, 270
BseRI	GAGGAG	1 cut(s)	453
BseX3I	CGGCCG	1 cut(s)	253
BseXI	GCAGC	4 cut(s)	35, 183, 283, 358
BsgI	GTGCAG	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	558
BsiHKCI	CYCGRG	2 cut(s)	32, 435
BsiSI	CCGG	3 cut(s)	91, 117, 707
BslFI	GGGAC	4 cut(s)	8, 133, 412, 743
BslI	CCNNNNNNNGG	7 cut(s)	32, 33, 91, 214, 391, 413, 719
BsmAI	GTCTC	3 cut(s)	92, 140, 435
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	4 cut(s)	8, 133, 412, 743
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	2 cut(s)	140, 435
BsoBI	CYCGRG	2 cut(s)	32, 435
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	319, 490, 688
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	3 cut(s)	269, 380, 629
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	48, 271
BspLI	GGNNCC	2 cut(s)	121, 711
BspPI	GGATC	2 cut(s)	485, 696
BspTNI	GGTCTC	2 cut(s)	140, 435
BssECI	CCNNGG	5 cut(s)	31, 91, 156, 477, 521
BssMI	GATC	3 cut(s)	319, 490, 688
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	649
Bst4CI	ACNGT	2 cut(s)	106, 317
Bst6I	CTCTTC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	507
BstBAI	YACGTR	1 cut(s)	745
BstDEI	CTNAG	3 cut(s)	56, 279, 783
BstDSI	CCRYGG	3 cut(s)	156, 477, 521
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	422
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	322, 493, 691
BstMAI	GTCTC	3 cut(s)	92, 140, 435
BstMBI	GATC	3 cut(s)	319, 490, 688
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 507, 562
BstNI	CCWGG	1 cut(s)	649
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	3 cut(s)	90, 116, 647
BstV1I	GCAGC	4 cut(s)	35, 183, 283, 358
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	2 cut(s)	490, 688
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	490, 688
BstZI	CGGCCG	1 cut(s)	253
BsuI	GTATCC	2 cut(s)	89, 761
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	3 cut(s)	156, 477, 521
BtsCI	GGATG	1 cut(s)	422
BtsIMutI	CAGTG	2 cut(s)	322, 609
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	120, 382
CpoI	CGGWCCG	1 cut(s)	382
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	79
CspI	CGGWCCG	1 cut(s)	382
CviAII	CATG	3 cut(s)	157, 363, 402
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	3 cut(s)	56, 279, 783
DpnI	GATC	3 cut(s)	321, 492, 690
DpnII	GATC	3 cut(s)	319, 490, 688
EaeI	YGGCCR	1 cut(s)	253
EagI	CGGCCG	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	556
EclXI	CGGCCG	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	558
Eco31I	GGTCTC	2 cut(s)	140, 435
Eco47I	GGWCC	2 cut(s)	120, 382
Eco52I	CGGCCG	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	709
Eco88I	CYCGRG	2 cut(s)	32, 435
EcoICRI	GAGCTC	1 cut(s)	556
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	647
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	3 cut(s)	160, 366, 405
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FaqI	GGGAC	4 cut(s)	8, 133, 412, 743
FatI	CATG	3 cut(s)	156, 362, 401
FauNDI	CATATG	1 cut(s)	10
Fnu4HI	GCNGC	5 cut(s)	49, 172, 269, 272, 347
FokI	GGATG	1 cut(s)	429
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	5 cut(s)	49, 172, 269, 272, 347
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	5 cut(s)	49, 172, 269, 272, 347
GsuI	CTGGAG	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	3 cut(s)	91, 117, 707
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	160, 366, 405
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	2 cut(s)	238, 464
HinfI	GANTC	7 cut(s)	359, 372, 387, 428, 472, 526, 619
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	3 cut(s)	91, 117, 707
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	624
Hpy188III	TCNNGA	4 cut(s)	34, 55, 301, 551
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	602
HpyCH4III	ACNGT	2 cut(s)	106, 317
HpyCH4IV	ACGT	3 cut(s)	21, 673, 744
HpyCH4V	TGCA	5 cut(s)	171, 366, 501, 510, 678
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 507, 562
HpyF3I	CTNAG	3 cut(s)	56, 279, 783
HpySE526I	ACGT	3 cut(s)	21, 673, 744
Hsp92II	CATG	3 cut(s)	160, 366, 405
HspAI	GCGC	1 cut(s)	60
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	319, 490, 688
LmnI	GCTCC	4 cut(s)	354, 553, 561, 763
LpnPI	CCDG	9 cut(s)	68, 104, 130, 356, 536, 634, 661, 712, 720
Lsp1109I	GCAGC	4 cut(s)	35, 183, 283, 358
LweI	GCATC	2 cut(s)	608, 745
MaeII	ACGT	3 cut(s)	21, 673, 744
MaeIII	GTNAC	4 cut(s)	188, 356, 419, 449
MalI	GATC	3 cut(s)	321, 492, 690
MboI	GATC	3 cut(s)	319, 490, 688
MboII	GAAGA	3 cut(s)	173, 289, 593
MflI	RGATCY	2 cut(s)	490, 688
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	2 cut(s)	248, 305
MlyI	GAGTC	2 cut(s)	353, 628
MmeI	TCCRAC	3 cut(s)	291, 558, 596
MnlI	CCTC	6 cut(s)	41, 208, 274, 388, 431, 652
MseI	TTAA	2 cut(s)	15, 666
MspI	CCGG	3 cut(s)	91, 117, 707
MspR9I	CCNGG	3 cut(s)	92, 118, 649
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	649
MwoI	GCNNNNNNNGC	3 cut(s)	57, 507, 562
NciI	CCSGG	2 cut(s)	92, 118
NcoI	CCATGG	1 cut(s)	156
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	3 cut(s)	319, 490, 688
NlaIII	CATG	3 cut(s)	160, 366, 405
NlaIV	GGNNCC	2 cut(s)	121, 711
NmuCI	GTSAC	3 cut(s)	188, 356, 449
NspI	RCATGY	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	82, 750
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	5 cut(s)	372, 387, 428, 472, 526
PflMI	CCANNNNNTGG	1 cut(s)	719
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	50, 173, 270, 273, 348
PleI	GAGTC	2 cut(s)	353, 627
PpsI	GAGTC	2 cut(s)	353, 627
Ppu21I	YACGTR	1 cut(s)	745
Psp124BI	GAGCTC	1 cut(s)	558
Psp1406I	AACGTT	1 cut(s)	673
Psp6I	CCWGG	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	121, 711
PspPI	GGNCC	2 cut(s)	120, 382
PspXI	VCTCGAGB	1 cut(s)	435
PsuI	RGATCY	2 cut(s)	490, 688
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
Rsr2I	CGGWCCG	1 cut(s)	382
RsrII	CGGWCCG	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	15, 666
SatI	GCNGC	5 cut(s)	49, 172, 269, 272, 347
Sau3AI	GATC	3 cut(s)	319, 490, 688
Sau96I	GGNCC	2 cut(s)	120, 382
SchI	GAGTC	2 cut(s)	353, 628
ScrFI	CCNGG	3 cut(s)	92, 118, 649
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	2 cut(s)	608, 745
Sfr274I	CTCGAG	1 cut(s)	435
SinI	GGWCC	2 cut(s)	120, 382
SlaI	CTCGAG	1 cut(s)	435
SmlI	CTYRAG	4 cut(s)	411, 435, 566, 692
SmoI	CTYRAG	4 cut(s)	411, 435, 566, 692
Sse9I	AATT	2 cut(s)	248, 305
SsiI	CCGC	3 cut(s)	269, 380, 629
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	3 cut(s)	90, 116, 647
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	106, 317
TaiI	ACGT	3 cut(s)	24, 676, 747
TaqI	TCGA	3 cut(s)	243, 436, 753
TaqII	GACCGA	2 cut(s)	137, 399
TasI	AATT	2 cut(s)	248, 305
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	5 cut(s)	372, 387, 428, 472, 526
Tru1I	TTAA	2 cut(s)	15, 666
Tru9I	TTAA	2 cut(s)	15, 666
TscAI	CASTG	2 cut(s)	322, 609
TseFI	GTSAC	3 cut(s)	188, 356, 449
TseI	GCWGC	4 cut(s)	48, 171, 271, 346
Tsp45I	GTSAC	3 cut(s)	188, 356, 449
TspGWI	ACGGA	3 cut(s)	158, 494, 538
TspRI	CASTG	2 cut(s)	322, 609
Van91I	CCANNNNNTGG	1 cut(s)	719
VpaK11BI	GGWCC	2 cut(s)	120, 382
XagI	CCTNNNNNAGG	1 cut(s)	411
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	405
XhoI	CTCGAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.