RchiOBHm_Chr4g0442441

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
64014728 .. 64014919
192 bp
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UTR
Exon/CDS
Intron
PRQ41020

Sequence Viewer

Length: 192 bp
ATGCCCTCATTTTCTGCTAGAGTACTTGAGCAGTTAAAATTGTATCCTGCTTCACTTTGTGATGTCAGTAGAGCGAAACGGCCTTGGGAGCTTGTACCTGATGGTCACAAGATTGGCAAACCGGAACTATTGTTCAGGGAATGGAAAGATGAAGAAGTTGAATCCTTAAAGAAGAAGTTTGGTGGAGGCTAA

Protein Analysis

63

Amino Acids

7.23

Weight (kDa)

8.85

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 59
AfaI GTAC 2 cut(s) 24, 96
AgsI TTSAA 1 cut(s) 161
AloI GAACNNNNNNTCC 2 cut(s) 116, 148
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
AoxI GGCC 1 cut(s) 80
BccI CCATC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 95
BciVI GTATCC 1 cut(s) 54
BfaI CTAG 1 cut(s) 18
BfuI GTATCC 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 83
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 122
BsnI GGCC 1 cut(s) 82
BspANI GGCC 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 88
BsuI GTATCC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 23, 95
CviJI RGCY 3 cut(s) 82, 91, 189
CviKI_1 RGCY 3 cut(s) 82, 91, 189
CviQI GTAC 2 cut(s) 23, 95
DraIII CACNNNGTG 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FspBI CTAG 1 cut(s) 18
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 122
HinfI GANTC 1 cut(s) 161
HpaII CCGG 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 60, 111, 121, 135
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 104
MboII GAAGA 2 cut(s) 164, 184
MluCI AATT 1 cut(s) 38
MnlI CCTC 2 cut(s) 16, 179
MseI TTAA 2 cut(s) 35, 167
MspI CCGG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 161
RsaI GTAC 2 cut(s) 24, 96
RsaNI GTAC 2 cut(s) 23, 95
SaqAI TTAA 2 cut(s) 35, 167
ScaI AGTACT 1 cut(s) 24
SetI ASST 2 cut(s) 93, 100
SgeI CNNG 9 cut(s) 30, 38, 59, 96, 104, 110, 121, 134, 148
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 38
SspMI CTAG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 83
TasI AATT 1 cut(s) 38
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 35, 167
Tru9I TTAA 2 cut(s) 35, 167
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 165
XspI CTAG 1 cut(s) 18
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.