Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Reverse (-)

16345055 .. 16346687

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0098600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATGCATATATGGAAATTGATGCTGAAGATGATGGCAATGCCATAGAGATGGGTCTCTCATATGAGGAAACTCAACAAACTACCATCAACGATGTGCATCATGATATGGAGTATTTTGTGACTGAAGCTATACAGGACATAGATTCTGAAGATGAGGATGTGGATCCAGAACTAACAGTTGCAAGGTGGCAACGTCATTTGGGTTTGATGGTGAAAGACCACACTTTTTTTGGTCTAGATGTTTTGGACTGGCGCGAGTTTAGGAAAATCAAAGTTCTAGATGAGGCTTGGTCCAAGATAAAGCGCCAAACAAATTCAAACAAGGGCAATCGTGCAAAGAAACGAATGAGCCACACAACAGGAACAAGAACGTTTGCTCAAGTGAGGAACCAATATACTACTAACAACCCTCAAGTGAATTTGGCTGACTTTGCTTCTTTGTTGACATTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

152

Amino Acids

17.69

Weight (kDa)

4.79

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	258
AclI	AACGTT	1 cut(s)	374
AclWI	GGATC	2 cut(s)	161, 174
AcsI	RAATTY	2 cut(s)	316, 421
AcuI	CTGAAG	3 cut(s)	48, 147, 171
AgsI	TTSAA	1 cut(s)	321
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	161, 174
ApoI	RAATTY	2 cut(s)	316, 421
AspLEI	GCGC	2 cut(s)	258, 309
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	166
BccI	CCATC	4 cut(s)	29, 46, 95, 205
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	2 cut(s)	239, 281
BfoI	RGCGCY	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	168, 392
BmsI	GCATC	2 cut(s)	13, 109
BpuEI	CTTGAG	2 cut(s)	366, 399
BsaBI	GATNNNNATC	2 cut(s)	99, 165
BsaI	GGTCTC	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	46
Bse8I	GATNNNNATC	2 cut(s)	99, 165
BseGI	GGATG	2 cut(s)	10, 166
BseJI	GATNNNNATC	2 cut(s)	99, 165
BseMI	GCAATG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	168, 392
BspPI	GGATC	2 cut(s)	161, 174
BspTNI	GGTCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	10, 166
BstFNI	CGCG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	2 cut(s)	258, 309
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstUI	CGCG	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	10, 166
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	2 cut(s)	258, 309
Cfr13I	GGNCC	1 cut(s)	294
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	4 cut(s)	131, 290, 354, 428
CviKI_1	RGCY	4 cut(s)	131, 290, 354, 428
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	3 cut(s)	48, 147, 171
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	1 cut(s)	107
FatI	CATG	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	64
FokI	GGATG	2 cut(s)	17, 173
FspBI	CTAG	2 cut(s)	239, 281
GlaI	GCGC	2 cut(s)	257, 308
HaeII	RGCGCY	1 cut(s)	310
HhaI	GCGC	2 cut(s)	258, 309
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	2 cut(s)	256, 307
HinP1I	GCGC	2 cut(s)	256, 307
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	1 cut(s)	146
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	5 cut(s)	104, 170, 239, 281, 456
Hpy8I	GTNNAC	1 cut(s)	447
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	196, 374
HpyCH4V	TGCA	4 cut(s)	8, 100, 185, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpySE526I	ACGT	2 cut(s)	196, 374
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	2 cut(s)	256, 307
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	4 cut(s)	122, 183, 238, 348
LweI	GCATC	2 cut(s)	13, 109
MaeI	CTAG	2 cut(s)	239, 281
MaeII	ACGT	2 cut(s)	196, 374
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	41, 164
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	3 cut(s)	18, 316, 421
MnlI	CCTC	5 cut(s)	61, 151, 280, 381, 423
Mph1103I	ATGCAT	1 cut(s)	10
MslI	CAYNNNNRTG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	168, 392
NmuCI	GTSAC	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	10
PagI	TCATGA	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	146
Psp1406I	AACGTT	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	168, 392
PspPI	GGNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	294
SetI	ASST	4 cut(s)	133, 191, 199, 377
SfaNI	GCATC	2 cut(s)	13, 109
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	381, 414
SmoI	CTYRAG	2 cut(s)	381, 414
Sse9I	AATT	3 cut(s)	18, 316, 421
SspMI	CTAG	2 cut(s)	239, 281
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	199, 377
TasI	AATT	3 cut(s)	18, 316, 421
TfiI	GAWTC	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	2 cut(s)	316, 421
XbaI	TCTAGA	2 cut(s)	238, 280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XspI	CTAG	2 cut(s)	239, 281
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.