Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341625.1

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Reverse (-)

7 .. 914

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341625.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggagaaggtaaaactaaagcaaggactcaaactagcaatgagcatttcaagtgaagggaatgcatatctgcaagaaagtcagttctggaagctttacaaggaggatcaaactcgctgctccattgttatgagaactgcagtggggctagtgcatcttcttgcttgcttattagaacccttcatgccatctttttctgttgaggtatttaagcagcttaatttgtctcctgagacgcacatatcactttgtgatgataaaggtgatattgatagggcaagacggccatgggagattgtacctagaggtcacaagattgggaaaccagagccgttgttcaaggagttgaatgatgatgaagtagattctctaaggaagaggtttgctggaagtcaggccgatagaaaggaaagggaagaagctgaagcagtgaagttggctgagcagctcaagaaatcaaaagtttcaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

157

Amino Acids

17.92

Weight (kDa)

8.39

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	444
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	51, 340, 349
AluBI	AGCT	4 cut(s)	94, 217, 422, 448
AluI	AGCT	4 cut(s)	94, 217, 422, 448
Alw26I	GTCTC	2 cut(s)	227, 231
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	284, 396
ApeKI	GCWGC	3 cut(s)	117, 214, 445
AsuHPI	GGTGA	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	104, 226, 457
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	299, 316
BcoDI	GTCTC	2 cut(s)	227, 231
BfaI	CTAG	3 cut(s)	35, 149, 303
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	3 cut(s)	118, 215, 446
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	3 cut(s)	119, 216, 447
BmsI	GCATC	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	222, 432
BseXI	GCAGC	3 cut(s)	104, 226, 457
BshFI	GGCC	2 cut(s)	286, 398
BsmAI	GTCTC	2 cut(s)	227, 231
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	286, 398
Bsp143I	GATC	1 cut(s)	106
Bsp1720I	GCTNAGC	1 cut(s)	441
Bsp19I	CCATGG	1 cut(s)	287
BspANI	GGCC	2 cut(s)	286, 398
BspCNI	CTCAG	2 cut(s)	223, 433
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	3 cut(s)	231, 371, 441
BstDSI	CCRYGG	1 cut(s)	287
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	227, 231
BstMBI	GATC	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	104, 226, 457
BsuRI	GGCC	2 cut(s)	286, 398
BtgI	CCRYGG	1 cut(s)	287
BtsI	GCAGTG	2 cut(s)	147, 435
BtsIMutI	CAGTG	2 cut(s)	147, 435
Cac8I	GCNNGC	1 cut(s)	166
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	2 cut(s)	184, 288
CviJI	RGCY	9 cut(s)	94, 148, 217, 286, 331, 398, 422, 440, 448
CviKI_1	RGCY	9 cut(s)	94, 148, 217, 286, 331, 398, 422, 440, 448
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	3 cut(s)	231, 371, 441
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DraIII	CACNNNGTG	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	444
EcoT14I	CCWWGG	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	2 cut(s)	187, 291
FaiI	YATR	5 cut(s)	67, 131, 185, 242, 289
FatI	CATG	2 cut(s)	183, 287
Fnu4HI	GCNGC	3 cut(s)	118, 215, 446
Fsp4HI	GCNGC	3 cut(s)	118, 215, 446
FspBI	CTAG	3 cut(s)	35, 149, 303
GluI	GCNGC	3 cut(s)	118, 215, 446
HaeIII	GGCC	2 cut(s)	286, 398
HgaI	GACGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	187, 291
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	27, 365
HphI	GGTGA	1 cut(s)	275
Hpy188III	TCNNGA	3 cut(s)	88, 230, 451
HpyAV	CCTTC	2 cut(s)	50, 190
HpyCH4V	TGCA	4 cut(s)	65, 73, 140, 154
HpyF3I	CTNAG	3 cut(s)	231, 371, 441
Hsp92II	CATG	2 cut(s)	187, 291
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	6 cut(s)	73, 243, 339, 372, 380, 453
Lsp1109I	GCAGC	3 cut(s)	104, 226, 457
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	3 cut(s)	35, 149, 303
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	3 cut(s)	149, 388, 428
MluCI	AATT	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	21
MnlI	CCTC	4 cut(s)	97, 196, 299, 372
Mph1103I	ATGCAT	1 cut(s)	67
MseI	TTAA	2 cut(s)	210, 219
MslI	CAYNNNNRTG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	67
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	187, 291
NmuCI	GTSAC	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	67
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	119, 216, 447
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	210, 219
SatI	GCNGC	3 cut(s)	118, 215, 446
Sau3AI	GATC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	1 cut(s)	220
SspMI	CTAG	3 cut(s)	35, 149, 303
StyI	CCWWGG	1 cut(s)	287
TasI	AATT	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	210, 219
Tru9I	TTAA	2 cut(s)	210, 219
TscAI	CASTG	2 cut(s)	147, 435
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	117, 214, 445
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	172, 372
TspRI	CASTG	2 cut(s)	147, 435
XspI	CTAG	3 cut(s)	35, 149, 303
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.