Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Forward (+)

16405648 .. 16405878

Gene Structure 231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0098900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGATGATTCCTTTGATAACTCTACTAAACAGGGTGGTATTGGAGTGATCATTAGAGACTCTTCTGGTGCATGTTTTGGTGGGTTCTACAGAATAGTTCGTAATGTCTTCTCAGCAGAACAAGTTGAGGCATTGGCGGGGAGGGCGGCAGTCTCACATGCTTTAGAGCAAGGACTCTCTCCGGTCATCTTCGAGACGGATTCTTTGGTATTTGTTCAAGCAGTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

76

Amino Acids

8.08

Weight (kDa)

4.79

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	4 - 76	1.3e-13	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	137, 146
AgsI	TTSAA	1 cut(s)	218
Alw26I	GTCTC	3 cut(s)	51, 157, 188
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
BbsI	GAAGAC	1 cut(s)	100
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	3 cut(s)	51, 157, 188
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	181
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	182
BsmAI	GTCTC	3 cut(s)	51, 157, 188
BsmBI	CGTCTC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	137, 146
BspCNI	CTCAG	1 cut(s)	125
BssMI	GATC	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	3 cut(s)	51, 157, 188
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	75, 161
BstSFI	CTRYAG	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	10
CviAII	CATG	2 cut(s)	72, 158
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	2 cut(s)	75, 161
FaiI	YATR	2 cut(s)	73, 159
FatI	CATG	2 cut(s)	71, 157
FauI	CCCGC	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	2 cut(s)	75, 161
HinfI	GANTC	4 cut(s)	8, 59, 174, 200
HpaII	CCGG	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	75, 161
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	48
LpnPI	CCDG	3 cut(s)	17, 51, 195
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	3 cut(s)	54, 100, 181
MlyI	GAGTC	2 cut(s)	53, 168
MnlI	CCTC	2 cut(s)	121, 135
MspI	CCGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	75, 161
NspI	RCATGY	2 cut(s)	75, 161
PfeI	GAWTC	2 cut(s)	8, 200
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	53, 168
PpsI	GAGTC	2 cut(s)	53, 168
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	2 cut(s)	53, 168
SfcI	CTRYAG	1 cut(s)	88
SgeI	CNNG	9 cut(s)	44, 78, 84, 134, 150, 170, 182, 194, 205
SsiI	CCGC	2 cut(s)	137, 146
TaqI	TCGA	1 cut(s)	192
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	8, 200
TspGWI	ACGGA	1 cut(s)	212
XceI	RCATGY	2 cut(s)	75, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.