Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Forward (+)

6952527 .. 6952937

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGAAGCTCAAACTAAAGCAAGGGCTGAAAATAGCCATGAGCATTTCTAGCGAGGGGAATGCATATCTCCAAGAATCCAAGTTCTGGAAGCTCTACAAGGAGGACCGACCTCGGTGCTCCATTGTCATTAAAACTTCAGTAGGGTTAGTGCATCTTCTTGCTTGCTTATTGGAACCTTACATGCCCTCATTTTCTGCTAGAGTACTTGAGCAGCTAAACTTGCCTCCTGAGTCGATCAAATCCCTTTGTGATGTCAATAAAGCAAAACGGCCTTGGGAGATCGTACCTGATGGTCACAAGATTGGAGAACCCAAGACATTGTTCACGATGTTGAACAGCGAAGAAGTCGAATCTCTGCGGAAAAAGTTTTCTGGAAGCCAAGCTGATAGGGAAAAACGTACACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

136

Amino Acids

15.54

Weight (kDa)

9.28

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anticodon_3	PF19303	1 - 128	1.2e-17	Anticodon binding domain of methionyl tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	87
AciI	CCGC	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	3 cut(s)	207, 288, 403
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	4 cut(s)	10, 94, 217, 386
AluI	AGCT	4 cut(s)	10, 94, 217, 386
Alw21I	GWGCWC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	287
BcgI	CGANNNNNNTGC	4 cut(s)	44, 78, 99, 133
BfaI	CTAG	2 cut(s)	51, 201
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
BmcAI	AGTACT	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	113, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	113, 275
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	237, 282
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	113, 275
BssMI	GATC	2 cut(s)	237, 282
BssT1I	CCWWGG	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	231
BstKTI	GATC	2 cut(s)	240, 285
BstMBI	GATC	2 cut(s)	237, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 223
BstNSI	RCATGY	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	3 cut(s)	206, 287, 402
CviAII	CATG	2 cut(s)	40, 184
CviJI	RGCY	8 cut(s)	10, 28, 38, 94, 217, 274, 381, 386
CviKI_1	RGCY	8 cut(s)	10, 28, 38, 94, 217, 274, 381, 386
CviQI	GTAC	3 cut(s)	206, 287, 402
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	239, 284
DpnII	GATC	2 cut(s)	237, 282
Eco130I	CCWWGG	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	275
EcoT22I	ATGCAT	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	2 cut(s)	43, 187
FaiI	YATR	3 cut(s)	41, 67, 185
FatI	CATG	2 cut(s)	39, 183
Fnu4HI	GCNGC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	2 cut(s)	51, 201
GluI	GCNGC	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	43, 187
HinfI	GANTC	3 cut(s)	77, 233, 353
Hpy166II	GTNNAC	2 cut(s)	327, 404
Hpy188III	TCNNGA	4 cut(s)	88, 230, 328, 375
Hpy8I	GTNNAC	2 cut(s)	327, 404
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	2 cut(s)	65, 154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 223
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	2 cut(s)	43, 187
Kzo9I	GATC	2 cut(s)	237, 282
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	73, 243, 303, 360
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	51, 201
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	239, 284
MboI	GATC	2 cut(s)	237, 282
MboII	GAAGA	2 cut(s)	149, 356
MhlI	GDGCHC	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	5 cut(s)	49, 97, 123, 199, 237
Mph1103I	ATGCAT	1 cut(s)	67
MseI	TTAA	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	51, 223
NdeII	GATC	2 cut(s)	237, 282
NlaIII	CATG	2 cut(s)	43, 187
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	67
NspI	RCATGY	1 cut(s)	187
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	77, 353
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	216
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	106
RsaI	GTAC	3 cut(s)	207, 288, 403
RsaNI	GTAC	3 cut(s)	206, 287, 402
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	2 cut(s)	237, 282
Sau96I	GGNCC	1 cut(s)	106
ScaI	AGTACT	1 cut(s)	207
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	8 cut(s)	12, 96, 115, 181, 219, 292, 388, 403
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SsiI	CCGC	1 cut(s)	361
SspMI	CTAG	2 cut(s)	51, 201
StyI	CCWWGG	1 cut(s)	275
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	2 cut(s)	236, 351
TaqII	GACCGA	1 cut(s)	123
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	2 cut(s)	77, 353
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	106
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	2 cut(s)	51, 201
ZrmI	AGTACT	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.