Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Forward (+)

6534763 .. 6536571

Gene Structure 1809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1809 bp

ATGACTTTGAAAATGGGAGACCTCGCCAAGCAGGACCAGAGCGTCCCCAAGCTCCCCATCCCGGGGGAGCGAAACATCCTGATCACTAGTGCCTTGCCATATGTTAACAACGTCCCCCACCTCGGGAACATCATTGGCTGCGTCCTGAGCGCCGATGTCTTTGCTCGGTACTGCCGTCTCCGGGGATACAATACCGTCTATATCTCCGGGACCGATGAGTATGGCACAGCGACGGGGACCAAAGCCATGGAAGAGAAGTGCAGCCCCCAAGAGATATGTGACAAGTATCACAAAATCCATAGGGAGGTTTATGAGTGGTTCAACATAAGCTTCGACCAATTCGGCCGAACTTCCACGCCGCAGCAAACTGAGGTCTGCCAACAAATTTTCAAGAAATTGTTGGACAATGATCGCCTTGCTGAAAACACAATCCAGCAGCTCCATTGTGACTCATGCAAAAGATTCTTAGCGGACCGATTCGTGGAGGGGACATGCCCTACTCAAGGATGTTACTATGATTCTGCTCGAGGAGACCAATGTGACAAGTGTGGAAAGCTTTTGAATCCCACGGAACTGAAAGATCCTAAATGCAAGGTATGCAAGGAAACTCCACGGATTCGCAAAACAAATCACTTGTTTCTGGAGCTCCCTTTGCTCAAGGATAAGTTGGAAGAGTACATCAATAAGGCATCAGTGGAAGGGTGTTGGAGTCAGAATGCGGTTCAAATCACAAATGCCTGGCTCAAAGAGGGGCTTAAACAACGTTGCATTACAAGGGATCTCAAGTGGGGTGTTCCGGTTCCACACGATGGCTTCAGGGACAAGGTATTCTACGTGTGGTTCGATGCTCCCATTGGATACATCTCCATTACCAAGTGTTACACTCCTGATCACTGGGAGAAGTGGTGGAAGAATCCTGAGGATGTCGAATTGTATCAGTTTATGGGCAAGGACAATGTGCCATTTCACACGGTCATGTTTCCTTCCGCTCTTCTTGGAACCGGAGAAAATTGGACACTCATGAAGAACATTAGTGTCACTGAATACTTGAACTATGAAGAAGGCAAGTTTTCCAAGAGTATAGGCATTGGAGTTTTTGGAAACGATGCAAAAGGAACGGGCATTCCAGTTGAAGTTTGGCGTTATTACCTGCTGACTAATAGGCCTGAGGTATCAGACACATTGTTCACCTGGGCCGATTTACAAGCAAAACTCAAAAGTGAGTTGGTGGGCAATTTGGGCAACTTCATCAACAGAGTTTTGAGTTTCGTTGCCAAACCTTCAGCCAAAGGAGGATACGGTGACACCATTCCTGATGCTCCACATGCAGACTCTGATGCCTTGACACTTGAATTAGCAGAAATAGTCGGTAGATACGTCGAGCAATACATAGAAGCAATGGAGAAGCTCAAACTAAAGCAAGGGCTGAAAATAGCCATGAGCATTTCTAGCGAGGGGAATGCATATCTCCAAGAATCCAAGTTCTGGAAGCTCTACAAGGAGGACCGACCTCGGTGCTCCATTGTCATTAAAACTTCAGTAGGGTTAGTGCATCTTCTTGCTTGCTTATTGGAACCTTACATGCCCTCATTTTCTGCTAGAGTACTTGAGCAGCTAAACTTGCCTCCTGAGTCGATCAAATCCCTTTGTGATGTCAATAAAGCAAAACGGCCTTGGGAGATCGTACCTGATGGTCACAAGATTGGAGAACCCAAGACATTGTTCACGAAGTTGAACAGCGAAGAAGTCGAATCTCTGCGGAAAAAGTTTTCTGGAAGCCAAGCTGATAGGGAAAAACGTACACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

602

Amino Acids

68.57

Weight (kDa)

7.73

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	26 - 421	7.1e-154	tRNA synthetases class I (M)
tRNA-synt_1	PF00133	28 - 268	2.6e-08	tRNA synthetases class I (I, L, M and V)
Anticodon_3	PF19303	451 - 594	5.6e-20	Anticodon binding domain of methionyl tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	1158
AccB7I	CCANNNNNTGG	2 cut(s)	809, 1485
AccBSI	CCGCTC	1 cut(s)	989
AciI	CCGC	5 cut(s)	359, 470, 719, 987, 1759
AclI	AACGTT	1 cut(s)	763
AclWI	GGATC	2 cut(s)	575, 786
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	384
AcuI	CTGAAG	3 cut(s)	799, 1266, 1521
AfaI	GTAC	5 cut(s)	170, 677, 1605, 1686, 1801
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	9 cut(s)	10, 322, 391, 562, 725, 1051, 1133, 1352, 1735
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	737, 1190
AjuI	GAANNNNNNNTTGG	2 cut(s)	1706, 1738
AloI	GAACNNNNNNTCC	2 cut(s)	1108, 1140
AluBI	AGCT	9 cut(s)	52, 330, 439, 556, 646, 1408, 1492, 1615, 1784
AluI	AGCT	9 cut(s)	52, 330, 439, 556, 646, 1408, 1492, 1615, 1784
Alw21I	GWGCWC	2 cut(s)	648, 1520
Alw26I	GTCTC	3 cut(s)	12, 182, 525
AlwI	GGATC	2 cut(s)	575, 786
AlwNI	CAGNNNCTG	1 cut(s)	1334
Ama87I	CYCGRG	3 cut(s)	61, 122, 525
AoxI	GGCC	4 cut(s)	343, 1163, 1194, 1670
ApeKI	GCWGC	5 cut(s)	138, 261, 361, 436, 1612
ApoI	RAATTY	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	6 cut(s)	34, 210, 237, 472, 1194, 1504
AsuC2I	CCSGG	4 cut(s)	62, 63, 182, 208
AsuHPI	GGTGA	2 cut(s)	1180, 1313
AvaI	CYCGRG	3 cut(s)	61, 122, 525
AvaII	GGWCC	5 cut(s)	34, 210, 237, 472, 1504
AxyI	CCTNAGG	2 cut(s)	918, 1167
BaeI	ACNNNNGTAYC	2 cut(s)	160, 193
BanII	GRGCYC	1 cut(s)	648
Bbv12I	GWGCWC	2 cut(s)	648, 1520
BbvI	GCAGC	5 cut(s)	125, 273, 373, 448, 1624
BccI	CCATC	3 cut(s)	65, 803, 1685
BceAI	ACGGC	2 cut(s)	159, 1685
BcgI	CGANNNNNNTGC	6 cut(s)	143, 177, 1442, 1476, 1497, 1531
BciT130I	CCWGG	2 cut(s)	739, 1192
BciVI	GTATCC	3 cut(s)	179, 851, 1289
BclI	TGATCA	2 cut(s)	81, 889
BcnI	CCSGG	4 cut(s)	62, 63, 182, 208
BcoDI	GTCTC	3 cut(s)	12, 182, 525
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	3 cut(s)	87, 1449, 1599
BfoI	RGCGCY	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	1158
BfuI	GTATCC	3 cut(s)	179, 851, 1289
BisI	GCNGC	6 cut(s)	139, 262, 359, 362, 437, 1613
BlsI	GCNGC	6 cut(s)	140, 263, 360, 363, 438, 1614
BmcAI	AGTACT	1 cut(s)	1605
Bme1390I	CCNGG	6 cut(s)	62, 63, 182, 208, 739, 1192
Bme18I	GGWCC	5 cut(s)	34, 210, 237, 472, 1504
BmeT110I	CYCGRG	3 cut(s)	61, 122, 525
BmgT120I	GGNCC	6 cut(s)	34, 210, 237, 472, 1194, 1504
BmiI	GGNNCC	5 cut(s)	211, 238, 801, 1000, 1575
BmrFI	CCNGG	6 cut(s)	62, 63, 182, 208, 739, 1192
BmrI	ACTGGG	1 cut(s)	904
BmsI	GCATC	6 cut(s)	698, 835, 1096, 1306, 1327, 1561
BmuI	ACTGGG	1 cut(s)	904
BpmI	CTGGAG	1 cut(s)	662
Bpu10I	CCTNAGC	1 cut(s)	146
BpuEI	CTTGAG	4 cut(s)	486, 641, 767, 1628
BpuMI	CCSGG	4 cut(s)	62, 63, 182, 208
BsaAI	YACGTR	1 cut(s)	835
BsaI	GGTCTC	2 cut(s)	12, 525
BsaWI	WCCGGW	2 cut(s)	796, 1001
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bse1I	ACTGG	2 cut(s)	899, 1127
Bse21I	CCTNAGG	2 cut(s)	918, 1167
Bse3DI	GCAATG	1 cut(s)	1404
BseBI	CCWGG	2 cut(s)	739, 1192
BseGI	GGATG	4 cut(s)	57, 75, 512, 928
BseMI	GCAATG	1 cut(s)	1404
BseMII	CTCAG	5 cut(s)	137, 360, 909, 1158, 1620
BseNI	ACTGG	2 cut(s)	899, 1127
BseRI	GAGGAG	1 cut(s)	543
BseX3I	CGGCCG	1 cut(s)	343
BseXI	GCAGC	5 cut(s)	125, 273, 373, 448, 1624
BsgI	GTGCAG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	4 cut(s)	345, 1165, 1196, 1672
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	2 cut(s)	648, 1520
BsiHKCI	CYCGRG	3 cut(s)	61, 122, 525
BsiSI	CCGG	5 cut(s)	62, 181, 207, 797, 1002
BslFI	GGGAC	6 cut(s)	29, 98, 223, 250, 502, 833
BsmAI	GTCTC	3 cut(s)	12, 182, 525
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	6 cut(s)	29, 98, 223, 250, 502, 833
BsmI	GAATGC	3 cut(s)	721, 1122, 1465
BsnI	GGCC	4 cut(s)	345, 1165, 1196, 1672
Bso31I	GGTCTC	2 cut(s)	12, 525
BsoBI	CYCGRG	3 cut(s)	61, 122, 525
Bsp1286I	GDGCHC	2 cut(s)	648, 1520
Bsp143I	GATC	7 cut(s)	81, 409, 580, 778, 889, 1635, 1680
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	5 cut(s)	359, 470, 719, 987, 1759
BspANI	GGCC	4 cut(s)	345, 1165, 1196, 1672
BspCNI	CTCAG	5 cut(s)	138, 361, 910, 1159, 1621
BspHI	TCATGA	1 cut(s)	1020
BspLI	GGNNCC	5 cut(s)	211, 238, 801, 1000, 1575
BspMI	ACCTGC	1 cut(s)	1158
BspPI	GGATC	2 cut(s)	575, 786
BspQI	GCTCTTC	1 cut(s)	996
BspTNI	GGTCTC	2 cut(s)	12, 525
BsrBI	CCGCTC	1 cut(s)	989
BsrDI	GCAATG	1 cut(s)	1404
BsrI	ACTGG	2 cut(s)	899, 1127
BssMI	GATC	7 cut(s)	81, 409, 580, 778, 889, 1635, 1680
BssT1I	CCWWGG	2 cut(s)	246, 1673
Bst2UI	CCWGG	2 cut(s)	739, 1192
Bst4CI	ACNGT	3 cut(s)	196, 973, 1301
Bst6I	CTCTTC	3 cut(s)	246, 666, 996
BstAPI	GCANNNNNTGC	1 cut(s)	597
BstBAI	YACGTR	1 cut(s)	835
BstC8I	GCNNGC	1 cut(s)	1564
BstDEI	CTNAG	6 cut(s)	146, 369, 466, 918, 1167, 1629
BstDSI	CCRYGG	3 cut(s)	246, 567, 611
BstENI	CCTNNNNNAGG	1 cut(s)	501
BstF5I	GGATG	4 cut(s)	57, 75, 512, 928
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	7 cut(s)	84, 412, 583, 781, 892, 1638, 1683
BstMAI	GTCTC	3 cut(s)	12, 182, 525
BstMBI	GATC	7 cut(s)	81, 409, 580, 778, 889, 1635, 1680
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	7 cut(s)	147, 597, 652, 1239, 1325, 1449, 1621
BstNI	CCWGG	2 cut(s)	739, 1192
BstNSI	RCATGY	3 cut(s)	495, 1328, 1585
BstSCI	CCNGG	6 cut(s)	60, 61, 180, 206, 737, 1190
BstV1I	GCAGC	5 cut(s)	125, 273, 373, 448, 1624
BstX2I	RGATCY	2 cut(s)	580, 778
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	2 cut(s)	580, 778
BstZI	CGGCCG	1 cut(s)	343
Bsu36I	CCTNAGG	2 cut(s)	918, 1167
BsuI	GTATCC	3 cut(s)	179, 851, 1289
BsuRI	GGCC	4 cut(s)	345, 1165, 1196, 1672
BtgI	CCRYGG	3 cut(s)	246, 567, 611
BtsCI	GGATG	4 cut(s)	57, 75, 512, 928
BtsIMutI	CAGTG	3 cut(s)	699, 892, 1038
BveI	ACCTGC	1 cut(s)	1158
Cac8I	GCNNGC	1 cut(s)	1564
CaiI	CAGNNNCTG	1 cut(s)	1334
CciI	TCATGA	1 cut(s)	1020
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	6 cut(s)	34, 210, 237, 472, 1194, 1504
Cfr9I	CCCGGG	1 cut(s)	61
CpoI	CGGWCCG	1 cut(s)	472
CseI	GACGC	2 cut(s)	31, 130
Csp6I	GTAC	5 cut(s)	169, 676, 1604, 1685, 1800
CspI	CGGWCCG	1 cut(s)	472
CviAII	CATG	8 cut(s)	247, 453, 492, 976, 1021, 1325, 1438, 1582
CviQI	GTAC	5 cut(s)	169, 676, 1604, 1685, 1800
DdeI	CTNAG	6 cut(s)	146, 369, 466, 918, 1167, 1629
DpnI	GATC	7 cut(s)	83, 411, 582, 780, 891, 1637, 1682
DpnII	GATC	7 cut(s)	81, 409, 580, 778, 889, 1635, 1680
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	343
EagI	CGGCCG	1 cut(s)	343
Eam1104I	CTCTTC	3 cut(s)	246, 666, 996
EarI	CTCTTC	3 cut(s)	246, 666, 996
Ecl136II	GAGCTC	1 cut(s)	646
EclXI	CGGCCG	1 cut(s)	343
Eco130I	CCWWGG	2 cut(s)	246, 1673
Eco147I	AGGCCT	1 cut(s)	1165
Eco24I	GRGCYC	1 cut(s)	648
Eco31I	GGTCTC	2 cut(s)	12, 525
Eco47I	GGWCC	5 cut(s)	34, 210, 237, 472, 1504
Eco52I	CGGCCG	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	3 cut(s)	799, 1266, 1521
Eco81I	CCTNAGG	2 cut(s)	918, 1167
Eco88I	CYCGRG	3 cut(s)	61, 122, 525
EcoICRI	GAGCTC	1 cut(s)	646
EcoNI	CCTNNNNNAGG	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	737, 1190
EcoT14I	CCWWGG	2 cut(s)	246, 1673
EcoT22I	ATGCAT	1 cut(s)	1465
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	2 cut(s)	246, 1673
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	8 cut(s)	250, 456, 495, 979, 1024, 1328, 1441, 1585
FalI	AAGNNNNNCTT	2 cut(s)	738, 770
FaqI	GGGAC	6 cut(s)	29, 98, 223, 250, 502, 833
FatI	CATG	8 cut(s)	246, 452, 491, 975, 1020, 1324, 1437, 1581
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	2 cut(s)	81, 889
Fnu4HI	GCNGC	6 cut(s)	139, 262, 359, 362, 437, 1613
FokI	GGATG	4 cut(s)	44, 62, 519, 935
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	6 cut(s)	139, 262, 359, 362, 437, 1613
FspBI	CTAG	3 cut(s)	87, 1449, 1599
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	6 cut(s)	139, 262, 359, 362, 437, 1613
GsuI	CTGGAG	1 cut(s)	662
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	4 cut(s)	345, 1165, 1196, 1672
HapII	CCGG	5 cut(s)	62, 181, 207, 797, 1002
HgaI	GACGC	2 cut(s)	31, 130
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	8 cut(s)	250, 456, 495, 979, 1024, 1328, 1441, 1585
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	2 cut(s)	328, 554
HpaI	GTTAAC	1 cut(s)	106
HpaII	CCGG	5 cut(s)	62, 181, 207, 797, 1002
HphI	GGTGA	2 cut(s)	1180, 1313
Hpy166II	GTNNAC	4 cut(s)	106, 1188, 1725, 1802
Hpy188I	TCNGA	3 cut(s)	714, 1177, 1336
Hpy8I	GTNNAC	4 cut(s)	106, 1188, 1725, 1802
Hpy99I	CGWCG	2 cut(s)	235, 1382
HpyAV	CCTTC	4 cut(s)	692, 993, 1055, 1290
HpyCH4III	ACNGT	3 cut(s)	196, 973, 1301
HpyCH4IV	ACGT	5 cut(s)	111, 763, 834, 1377, 1798
HpyCH4V	TGCA	9 cut(s)	261, 456, 591, 600, 768, 1109, 1328, 1463, 1552
HpyF10VI	GCNNNNNNNGC	7 cut(s)	147, 597, 652, 1239, 1325, 1449, 1621
HpyF3I	CTNAG	6 cut(s)	146, 369, 466, 918, 1167, 1629
HpySE526I	ACGT	5 cut(s)	111, 763, 834, 1377, 1798
Hsp92II	CATG	8 cut(s)	250, 456, 495, 979, 1024, 1328, 1441, 1585
HspAI	GCGC	1 cut(s)	150
Ksp22I	TGATCA	2 cut(s)	81, 889
KspAI	GTTAAC	1 cut(s)	106
Kzo9I	GATC	7 cut(s)	81, 409, 580, 778, 889, 1635, 1680
LguI	GCTCTTC	1 cut(s)	996
LmnI	GCTCC	8 cut(s)	57, 67, 444, 643, 651, 853, 1324, 1523
Lsp1109I	GCAGC	5 cut(s)	125, 273, 373, 448, 1624
LweI	GCATC	6 cut(s)	698, 835, 1096, 1306, 1327, 1561
MaeI	CTAG	3 cut(s)	87, 1449, 1599
MaeII	ACGT	5 cut(s)	111, 763, 834, 1377, 1798
MaeIII	GTNAC	8 cut(s)	278, 446, 509, 539, 878, 1036, 1301, 1694
MalI	GATC	7 cut(s)	83, 411, 582, 780, 891, 1637, 1682
MbiI	CCGCTC	1 cut(s)	989
MboI	GATC	7 cut(s)	81, 409, 580, 778, 889, 1635, 1680
MboII	GAAGA	8 cut(s)	263, 683, 922, 983, 1036, 1070, 1547, 1754
MflI	RGATCY	2 cut(s)	580, 778
MhlI	GDGCHC	2 cut(s)	648, 1520
MluCI	AATT	7 cut(s)	338, 384, 395, 929, 1009, 1234, 1352
MlyI	GAGTC	4 cut(s)	443, 718, 1325, 1640
MmeI	TCCRAC	3 cut(s)	381, 648, 686
Mph1103I	ATGCAT	1 cut(s)	1465
MseI	TTAA	3 cut(s)	105, 756, 1530
MslI	CAYNNNNRTG	1 cut(s)	974
MspI	CCGG	5 cut(s)	62, 181, 207, 797, 1002
MspR9I	CCNGG	6 cut(s)	62, 63, 182, 208, 739, 1192
Mva1269I	GAATGC	3 cut(s)	721, 1122, 1465
MvaI	CCWGG	2 cut(s)	739, 1192
MwoI	GCNNNNNNNGC	7 cut(s)	147, 597, 652, 1239, 1325, 1449, 1621
NciI	CCSGG	4 cut(s)	62, 63, 182, 208
NcoI	CCATGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	7 cut(s)	81, 409, 580, 778, 889, 1635, 1680
NlaIII	CATG	8 cut(s)	250, 456, 495, 979, 1024, 1328, 1441, 1585
NlaIV	GGNNCC	5 cut(s)	211, 238, 801, 1000, 1575
NmuCI	GTSAC	6 cut(s)	278, 446, 539, 1036, 1301, 1694
NsiI	ATGCAT	1 cut(s)	1465
NspI	RCATGY	3 cut(s)	495, 1328, 1585
PaeR7I	CTCGAG	1 cut(s)	525
PagI	TCATGA	1 cut(s)	1020
PceI	AGGCCT	1 cut(s)	1165
PciSI	GCTCTTC	1 cut(s)	996
PcsI	WCGNNNNNNNCGW	3 cut(s)	172, 840, 1374
PctI	GAATGC	3 cut(s)	721, 1122, 1465
PfeI	GAWTC	8 cut(s)	462, 477, 518, 562, 616, 913, 1475, 1751
PflMI	CCANNNNNTGG	2 cut(s)	809, 1485
PfoI	TCCNGGA	1 cut(s)	206
PkrI	GCNGC	6 cut(s)	140, 263, 360, 363, 438, 1614
PleI	GAGTC	4 cut(s)	443, 717, 1325, 1639
PpsI	GAGTC	4 cut(s)	443, 717, 1325, 1639
Ppu21I	YACGTR	1 cut(s)	835
Psp124BI	GAGCTC	1 cut(s)	648
Psp1406I	AACGTT	1 cut(s)	763
Psp6I	CCWGG	2 cut(s)	737, 1190
PspGI	CCWGG	2 cut(s)	737, 1190
PspN4I	GGNNCC	5 cut(s)	211, 238, 801, 1000, 1575
PspPI	GGNCC	6 cut(s)	34, 210, 237, 472, 1194, 1504
PspXI	VCTCGAGB	1 cut(s)	525
PstNI	CAGNNNCTG	1 cut(s)	1334
PsuI	RGATCY	2 cut(s)	580, 778
RsaI	GTAC	5 cut(s)	170, 677, 1605, 1686, 1801
RsaNI	GTAC	5 cut(s)	169, 676, 1604, 1685, 1800
RseI	CAYNNNNRTG	1 cut(s)	974
Rsr2I	CGGWCCG	1 cut(s)	472
RsrII	CGGWCCG	1 cut(s)	472
SacI	GAGCTC	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	996
SaqAI	TTAA	3 cut(s)	105, 756, 1530
SatI	GCNGC	6 cut(s)	139, 262, 359, 362, 437, 1613
Sau3AI	GATC	7 cut(s)	81, 409, 580, 778, 889, 1635, 1680
Sau96I	GGNCC	6 cut(s)	34, 210, 237, 472, 1194, 1504
ScaI	AGTACT	1 cut(s)	1605
SchI	GAGTC	4 cut(s)	443, 718, 1325, 1640
ScrFI	CCNGG	6 cut(s)	62, 63, 182, 208, 739, 1192
SduI	GDGCHC	2 cut(s)	648, 1520
SfaNI	GCATC	6 cut(s)	698, 835, 1096, 1306, 1327, 1561
Sfr274I	CTCGAG	1 cut(s)	525
SinI	GGWCC	5 cut(s)	34, 210, 237, 472, 1504
SlaI	CTCGAG	1 cut(s)	525
SmaI	CCCGGG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	974
SmlI	CTYRAG	5 cut(s)	501, 525, 656, 782, 1607
SmoI	CTYRAG	5 cut(s)	501, 525, 656, 782, 1607
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	7 cut(s)	338, 384, 395, 929, 1009, 1234, 1352
SseBI	AGGCCT	1 cut(s)	1165
SsiI	CCGC	5 cut(s)	359, 470, 719, 987, 1759
SspMI	CTAG	3 cut(s)	87, 1449, 1599
SstI	GAGCTC	1 cut(s)	648
StuI	AGGCCT	1 cut(s)	1165
StyD4I	CCNGG	6 cut(s)	60, 61, 180, 206, 737, 1190
StyI	CCWWGG	2 cut(s)	246, 1673
TaaI	ACNGT	3 cut(s)	196, 973, 1301
TaiI	ACGT	5 cut(s)	114, 766, 837, 1380, 1801
TaqI	TCGA	7 cut(s)	333, 526, 843, 927, 1380, 1634, 1749
TaqII	GACCGA	3 cut(s)	227, 489, 1521
TasI	AATT	7 cut(s)	338, 384, 395, 929, 1009, 1234, 1352
TatI	WGTACW	2 cut(s)	675, 1603
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	8 cut(s)	462, 477, 518, 562, 616, 913, 1475, 1751
Tru1I	TTAA	3 cut(s)	105, 756, 1530
Tru9I	TTAA	3 cut(s)	105, 756, 1530
TscAI	CASTG	3 cut(s)	699, 899, 1045
TseFI	GTSAC	6 cut(s)	278, 446, 539, 1036, 1301, 1694
TseI	GCWGC	5 cut(s)	138, 261, 361, 436, 1612
Tsp45I	GTSAC	6 cut(s)	278, 446, 539, 1036, 1301, 1694
TspDTI	ATGAA	3 cut(s)	1037, 1071, 1237
TspGWI	ACGGA	2 cut(s)	584, 628
TspMI	CCCGGG	1 cut(s)	61
TspRI	CASTG	3 cut(s)	699, 899, 1045
Van91I	CCANNNNNTGG	2 cut(s)	809, 1485
VpaK11BI	GGWCC	5 cut(s)	34, 210, 237, 472, 1504
XagI	CCTNNNNNAGG	1 cut(s)	501
XapI	RAATTY	1 cut(s)	384
XceI	RCATGY	3 cut(s)	495, 1328, 1585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1134
XhoI	CTCGAG	1 cut(s)	525
XmaI	CCCGGG	1 cut(s)	61
XspI	CTAG	3 cut(s)	87, 1449, 1599
ZrmI	AGTACT	1 cut(s)	1605
Zsp2I	ATGCAT	1 cut(s)	1465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.