Rroxscaffold_4G00318360

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
44502911 .. 44508458
5548 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00318360.1

Sequence Viewer

Length: 978 bp
ATGGGCAAAGATAATGTGCCATTCCACACGGTGATGTTTCCTTCCACGCTTCTTGGAACTGGTGAAAATTGGACTTTAATGAAGACAATTAGTGTTACTGAATACTTGAACTATGAAGCAGGAAAGTTTTCCAAGAGTAAAGGGATTGGAGTATTTGGAAACGATGCCAAAGATACAAACATTCCTGTTGAAGTATGGCGATATTACTTGCTAACCAATAGGCCCGAGGTGTCGGATACATTATTTACATGGGCGGATTTGCAAGCGAAGCTCAACAGTGAATTGCTGAATAATTTGGGCAACTTCATTAACCGAGTTTTGAGTTTTGTTGCCAAACCTTCAGGTCAAGGATATGACTCCATTATTCCAGATGCTCAAGATGCCATCTCTGATCCTTTGACAGAGAAAATAGCTGAGAAAGTGGGTAAATATGTGGAGCAATATGTAGAGGCCATGGAGAAGGTAAAACTAAAGCAAGGACTCAAACTAGCAATGAGCATTTCTAGTGAAGGGAATGCATATCTGCAGGAAAGTCGGTTCTGGAAGCTTTACAAGGAAGACCAACCTCGCTGCTCCATTGTTATGAGAACTGCAGTGGGGCTAGTGCATCTTCTTGCTTGCTTATTAGAACCGTTCATGCCATCGTTTTCTGTTAAGGTATTTAAGCAGCTTAATCTGCCTCCTGAGACGCACATATCACTTTGTGATGATAAAGGTGATACTGATAGGGCAAGACAGCCATGGGAGATTGTACCTAGAGGTCACAAGATTGGGAAACCAGAGCCGTTGTTCAAGGAATTGAATAATGATGAAGTAGATTCTCTAAGGAAGAAGTTTGCTGGAAGTCAGGCCGATAGAAAGGAAAGGGAAGAAGCTGAAGCAGTGAAGTTGGCTGAGCAGCTCAAGAAATCAAAAGTTTCAGAATCGGAAGGTATGCGTCCTTTGCAACCTGAAGCCAGCGACCATACGGCGTATTAA

Protein Analysis

325

Amino Acids

36.67

Weight (kDa)

6.06

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1g PF09334 1 - 107 7.3e-35 tRNA synthetases class I (M)
Anticodon_3 PF19303 134 - 283 4.5e-20 Anticodon binding domain of methionyl tRNA ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 386
AcuI CTGAAG 3 cut(s) 324, 897, 972
AdeI CACNNNGTG 2 cut(s) 31, 704
AfaI GTAC 1 cut(s) 753
AgsI TTSAA 4 cut(s) 109, 191, 793, 802
AloI GAACNNNNNNTCC 2 cut(s) 521, 553
AluBI AGCT 6 cut(s) 271, 413, 547, 670, 875, 901
AluI AGCT 6 cut(s) 271, 413, 547, 670, 875, 901
Alw26I GTCTC 1 cut(s) 680
AlwI GGATC 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 3 cut(s) 221, 450, 849
ApeKI GCWGC 3 cut(s) 570, 667, 898
Asp700I GAANNNNTTC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 43, 74, 728
AvaI CYCGRG 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 89, 564
BbvI GCAGC 3 cut(s) 557, 679, 910
BccI CCATC 2 cut(s) 392, 649
BceAI ACGGC 1 cut(s) 769
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciVI GTATCC 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 4 cut(s) 488, 504, 602, 756
BfmI CTRYAG 2 cut(s) 524, 591
BfuI GTATCC 1 cut(s) 229
BisI GCNGC 3 cut(s) 571, 668, 899
BlpI GCTNAGC 1 cut(s) 894
BlsI GCNGC 3 cut(s) 572, 669, 900
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 222
BmsI GCATC 4 cut(s) 154, 361, 370, 616
BpiI GAAGAC 2 cut(s) 89, 564
Bpu1102I GCTNAGC 1 cut(s) 894
BpuEI CTTGAG 2 cut(s) 360, 887
BsaJI CCNNGG 3 cut(s) 225, 453, 740
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 498
BseDI CCNNGG 3 cut(s) 225, 453, 740
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 3 cut(s) 405, 675, 885
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 3 cut(s) 557, 679, 910
BshFI GGCC 3 cut(s) 223, 452, 851
BsiHKCI CYCGRG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 680
BsmBI CGTCTC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 3 cut(s) 223, 452, 851
BsoBI CYCGRG 1 cut(s) 224
Bsp143I GATC 1 cut(s) 391
Bsp1720I GCTNAGC 1 cut(s) 894
Bsp19I CCATGG 2 cut(s) 453, 740
BspACI CCGC 1 cut(s) 254
BspANI GGCC 3 cut(s) 223, 452, 851
BspCNI CTCAG 3 cut(s) 406, 676, 886
BspMAI CTGCAG 2 cut(s) 528, 595
BspPI GGATC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 225, 453, 740
BssMI GATC 1 cut(s) 391
BssT1I CCWWGG 2 cut(s) 453, 740
Bst4CI ACNGT 3 cut(s) 31, 278, 633
BstC8I GCNNGC 3 cut(s) 264, 619, 958
BstDEI CTNAG 4 cut(s) 414, 684, 824, 894
BstDSI CCRYGG 2 cut(s) 453, 740
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 4 cut(s) 268, 380, 676, 943
BstSFI CTRYAG 2 cut(s) 524, 591
BstV1I GCAGC 3 cut(s) 557, 679, 910
BstV2I GAAGAC 2 cut(s) 89, 564
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 3 cut(s) 223, 452, 851
BtgI CCRYGG 2 cut(s) 453, 740
BtsI GCAGTG 2 cut(s) 600, 888
BtsIMutI CAGTG 3 cut(s) 283, 600, 888
Cac8I GCNNGC 3 cut(s) 264, 619, 958
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 2 cut(s) 697, 926
Csp6I GTAC 1 cut(s) 752
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 4 cut(s) 249, 454, 637, 741
CviQI GTAC 1 cut(s) 752
DdeI CTNAG 4 cut(s) 414, 684, 824, 894
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
DraIII CACNNNGTG 2 cut(s) 31, 704
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 453, 740
Eco57I CTGAAG 3 cut(s) 324, 897, 972
Eco88I CYCGRG 1 cut(s) 224
EcoT14I CCWWGG 2 cut(s) 453, 740
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 453, 740
Esp3I CGTCTC 1 cut(s) 680
FaeI CATG 4 cut(s) 252, 457, 640, 744
FatI CATG 4 cut(s) 248, 453, 636, 740
Fnu4HI GCNGC 3 cut(s) 571, 668, 899
Fsp4HI GCNGC 3 cut(s) 571, 668, 899
FspBI CTAG 4 cut(s) 488, 504, 602, 756
GluI GCNGC 3 cut(s) 571, 668, 899
HaeIII GGCC 3 cut(s) 223, 452, 851
HgaI GACGC 2 cut(s) 697, 926
Hin1II CATG 4 cut(s) 252, 457, 640, 744
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 4 cut(s) 356, 480, 818, 923
HphI GGTGA 3 cut(s) 43, 74, 728
Hpy188I TCNGA 4 cut(s) 235, 391, 922, 928
Hpy188III TCNNGA 5 cut(s) 368, 377, 541, 683, 904
HpyAV CCTTC 5 cut(s) 51, 348, 454, 503, 923
HpyCH4III ACNGT 3 cut(s) 31, 278, 633
HpyCH4V TGCA 6 cut(s) 262, 518, 526, 593, 607, 946
HpyF10VI GCNNNNNNNGC 4 cut(s) 268, 380, 676, 943
HpyF3I CTNAG 4 cut(s) 414, 684, 824, 894
Hsp92II CATG 4 cut(s) 252, 457, 640, 744
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 2 cut(s) 436, 578
Lsp1109I GCAGC 3 cut(s) 557, 679, 910
LweI GCATC 4 cut(s) 154, 361, 370, 616
MaeI CTAG 4 cut(s) 488, 504, 602, 756
MaeIII GTNAC 2 cut(s) 94, 761
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 5 cut(s) 94, 569, 602, 841, 881
MluCI AATT 5 cut(s) 67, 87, 281, 292, 797
MlyI GAGTC 2 cut(s) 350, 474
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 5 cut(s) 220, 442, 576, 690, 752
Mph1103I ATGCAT 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 6 cut(s) 77, 309, 654, 663, 672, 976
MslI CAYNNNNRTG 2 cut(s) 32, 581
Mva1269I GAATGC 1 cut(s) 520
MwoI GCNNNNNNNGC 4 cut(s) 268, 380, 676, 943
NcoI CCATGG 2 cut(s) 453, 740
NdeII GATC 1 cut(s) 391
NlaIII CATG 4 cut(s) 252, 457, 640, 744
NmuCI GTSAC 1 cut(s) 761
NsiI ATGCAT 1 cut(s) 520
PctI GAATGC 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 818, 923
PkrI GCNGC 3 cut(s) 572, 669, 900
PleI GAGTC 2 cut(s) 350, 474
PpsI GAGTC 2 cut(s) 350, 474
PspPI GGNCC 1 cut(s) 222
PstI CTGCAG 2 cut(s) 528, 595
RsaI GTAC 1 cut(s) 753
RsaNI GTAC 1 cut(s) 752
RseI CAYNNNNRTG 2 cut(s) 32, 581
SaqAI TTAA 6 cut(s) 77, 309, 654, 663, 672, 976
SatI GCNGC 3 cut(s) 571, 668, 899
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 2 cut(s) 350, 474
SfaNI GCATC 4 cut(s) 154, 361, 370, 616
SfcI CTRYAG 2 cut(s) 524, 591
SmiMI CAYNNNNRTG 2 cut(s) 32, 581
SmlI CTYRAG 2 cut(s) 375, 902
SmoI CTYRAG 2 cut(s) 375, 902
Sse9I AATT 5 cut(s) 67, 87, 281, 292, 797
SsiI CCGC 1 cut(s) 254
SspMI CTAG 4 cut(s) 488, 504, 602, 756
StyI CCWWGG 2 cut(s) 453, 740
TaaI ACNGT 3 cut(s) 31, 278, 633
TasI AATT 5 cut(s) 67, 87, 281, 292, 797
TfiI GAWTC 2 cut(s) 818, 923
Tru1I TTAA 6 cut(s) 77, 309, 654, 663, 672, 976
Tru9I TTAA 6 cut(s) 77, 309, 654, 663, 672, 976
TscAI CASTG 3 cut(s) 283, 600, 888
TseFI GTSAC 1 cut(s) 761
TseI GCWGC 3 cut(s) 570, 667, 898
Tsp45I GTSAC 1 cut(s) 761
TspDTI ATGAA 5 cut(s) 95, 129, 295, 625, 825
TspRI CASTG 3 cut(s) 283, 600, 888
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 4 cut(s) 488, 504, 602, 756
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.