Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Forward (+)

33205905 .. 33207689

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36103.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGGAAGGACAATGTGCCATTTCACACAATCATGTTCCCCTCAGCGCTTCTTGGAACCGGAGAAAATTGGACACTCATGAACAATATCAGTGTAACTGAGTACTTAAACTATGAAAAAGGCAAGTTTTCTAAGAGTAGAGGCATTGGAGTTTTCGGAAACGATGCAAAACTCACAGGCATTCCAGTTGAAGTGTGGCTCTATTACTTGCTGACTAATAGGCCTGAGGGATCCGACACTGAGTTTGCTTGGTCCGATTTACAAACAAAACTCAAAAGTGAGTTGGTTGGTAATTTAGGCGACTTCATCAACAGAGTTTTGAGTTTCATTGCTAAACCTTCAGGAGGATATGGTGGCATAATTCCTGAGGCTGCAGGTGCAGACTCTGATGCTTTGACAGTTGAGTTAGCAGAAAAAGTCGGCAGACATGTAGAGCAATACATGGAAGCAATGGAGAAGCTCAAACTAAAGCAAGGGCTTAAATTAGCAATGAGTATTTCTAGCGAGGGGAATGCATATCTCCAAGGATCCCAGTTCTGGAAGCTCTACAAGGAGGACCGGCCTCGGTGCTCTATTGTCATCAAAACTTCAGTAGGGTTAGTGCATCTTCTTGATTTCTTATTGGAACCGTACATGCCTTCCATTTCTGCTAGGGTACTTGAGCAGCTGAACTTGCCTCATGAGTCAATCAAATCCCTTTGTGATGTCAATAAATCAAAACGGCCTTGGGAGATTGTAGCTGATGGTCACAAGATTGGGGAACCCAAAACATTATTTACGACGTTGAAAGATGAAGAAGTAGAATCTCTAAGGAAGAAGTTTGGGGGAACCCAAGCTGATAGGGAAAAATGTACCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

287

Amino Acids

31.91

Weight (kDa)

6.55

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	1 - 107	4e-30	tRNA synthetases class I (M)
Anticodon_3	PF19303	129 - 278	3.6e-20	Anticodon binding domain of methionyl tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
Acc36I	ACCTGC	1 cut(s)	365
AclWI	GGATC	4 cut(s)	225, 238, 522, 535
AcuI	CTGAAG	2 cut(s)	324, 573
AfaI	GTAC	4 cut(s)	104, 632, 657, 853
AfeI	AGCGCT	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	344, 537
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	191, 787
AluBI	AGCT	5 cut(s)	460, 544, 667, 740, 836
AluI	AGCT	5 cut(s)	460, 544, 667, 740, 836
Alw21I	GWGCWC	1 cut(s)	572
AlwI	GGATC	4 cut(s)	225, 238, 522, 535
AlwNI	CAGNNNCTG	1 cut(s)	386
Aor51HI	AGCGCT	1 cut(s)	48
AoxI	GGCC	3 cut(s)	221, 560, 722
ApeKI	GCWGC	2 cut(s)	371, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	252, 556
AvaII	GGWCC	2 cut(s)	252, 556
AxyI	CCTNAGG	2 cut(s)	225, 366
BamHI	GGATCC	2 cut(s)	230, 527
Bbv12I	GWGCWC	1 cut(s)	572
BbvCI	CCTCAGC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	358, 676
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	1 cut(s)	737
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BfaI	CTAG	2 cut(s)	501, 651
BfmI	CTRYAG	1 cut(s)	372
BfoI	RGCGCY	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	2 cut(s)	372, 665
BlsI	GCNGC	2 cut(s)	373, 666
BmcAI	AGTACT	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	252, 556
BmgT120I	GGNCC	2 cut(s)	252, 556
BmiI	GGNNCC	6 cut(s)	58, 232, 529, 627, 762, 829
BmrI	ACTGGG	1 cut(s)	526
BmsI	GCATC	3 cut(s)	154, 379, 613
BmuI	ACTGGG	1 cut(s)	526
Bpu10I	CCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	680
BsaJI	CCNNGG	3 cut(s)	523, 563, 725
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 537
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	2 cut(s)	185, 532
Bse21I	CCTNAGG	2 cut(s)	225, 366
Bse3DI	GCAATG	3 cut(s)	327, 456, 495
BseDI	CCNNGG	3 cut(s)	523, 563, 725
BseLI	CCNNNNNNNGG	2 cut(s)	344, 537
BseMI	GCAATG	3 cut(s)	327, 456, 495
BseMII	CTCAG	5 cut(s)	57, 90, 216, 231, 357
BseNI	ACTGG	2 cut(s)	185, 532
BseXI	GCAGC	2 cut(s)	358, 676
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	223, 562, 724
BsiHKAI	GWGCWC	1 cut(s)	572
BsiSI	CCGG	2 cut(s)	60, 559
BslI	CCNNNNNNNGG	2 cut(s)	344, 537
BsmI	GAATGC	2 cut(s)	180, 517
BsnI	GGCC	3 cut(s)	223, 562, 724
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp143I	GATC	2 cut(s)	230, 527
BspANI	GGCC	3 cut(s)	223, 562, 724
BspCNI	CTCAG	5 cut(s)	56, 91, 217, 232, 358
BspHI	TCATGA	2 cut(s)	78, 679
BspLI	GGNNCC	6 cut(s)	58, 232, 529, 627, 762, 829
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	4 cut(s)	225, 238, 522, 535
BsrDI	GCAATG	3 cut(s)	327, 456, 495
BsrFI	RCCGGY	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	185, 532
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	3 cut(s)	523, 563, 725
BssMI	GATC	2 cut(s)	230, 527
BssT1I	CCWWGG	2 cut(s)	523, 725
Bst4CI	ACNGT	2 cut(s)	400, 630
BstDEI	CTNAG	7 cut(s)	43, 99, 132, 225, 240, 366, 809
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	233, 530
BstMBI	GATC	2 cut(s)	230, 527
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 673
BstNSI	RCATGY	2 cut(s)	431, 637
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	358, 676
BstX2I	RGATCY	2 cut(s)	230, 527
BstYI	RGATCY	2 cut(s)	230, 527
Bsu36I	CCTNAGG	2 cut(s)	225, 366
BsuRI	GGCC	3 cut(s)	223, 562, 724
BtsIMutI	CAGTG	2 cut(s)	97, 237
BveI	ACCTGC	1 cut(s)	365
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	2 cut(s)	78, 679
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	2 cut(s)	252, 556
Csp6I	GTAC	4 cut(s)	103, 631, 656, 852
CviAII	CATG	6 cut(s)	34, 79, 428, 442, 634, 680
CviQI	GTAC	4 cut(s)	103, 631, 656, 852
DdeI	CTNAG	7 cut(s)	43, 99, 132, 225, 240, 366, 809
DpnI	GATC	2 cut(s)	232, 529
DpnII	GATC	2 cut(s)	230, 527
Eco130I	CCWWGG	2 cut(s)	523, 725
Eco147I	AGGCCT	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	252, 556
Eco47III	AGCGCT	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	324, 573
Eco81I	CCTNAGG	2 cut(s)	225, 366
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	523, 725
EcoT22I	ATGCAT	1 cut(s)	517
ErhI	CCWWGG	2 cut(s)	523, 725
FaeI	CATG	6 cut(s)	37, 82, 431, 445, 637, 683
FatI	CATG	6 cut(s)	33, 78, 427, 441, 633, 679
Fnu4HI	GCNGC	2 cut(s)	372, 665
Fsp4HI	GCNGC	2 cut(s)	372, 665
FspBI	CTAG	2 cut(s)	501, 651
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	372, 665
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	223, 562, 724
HapII	CCGG	2 cut(s)	60, 559
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	6 cut(s)	37, 82, 431, 445, 637, 683
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	3 cut(s)	383, 683, 803
HpaII	CCGG	2 cut(s)	60, 559
Hpy188I	TCNGA	4 cut(s)	158, 235, 256, 388
Hpy188III	TCNNGA	6 cut(s)	79, 342, 365, 538, 611, 680
Hpy99I	CGWCG	1 cut(s)	784
HpyAV	CCTTC	2 cut(s)	348, 648
HpyCH4III	ACNGT	2 cut(s)	400, 630
HpyCH4IV	ACGT	1 cut(s)	782
HpyCH4V	TGCA	5 cut(s)	167, 374, 380, 515, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 673
HpyF3I	CTNAG	7 cut(s)	43, 99, 132, 225, 240, 366, 809
HpySE526I	ACGT	1 cut(s)	782
Hsp92II	CATG	6 cut(s)	37, 82, 431, 445, 637, 683
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	230, 527
Lsp1109I	GCAGC	2 cut(s)	358, 676
LweI	GCATC	3 cut(s)	154, 379, 613
MaeI	CTAG	2 cut(s)	501, 651
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	2 cut(s)	94, 746
MalI	GATC	2 cut(s)	232, 529
MboI	GATC	2 cut(s)	230, 527
MboII	GAAGA	3 cut(s)	599, 806, 826
MflI	RGATCY	2 cut(s)	230, 527
MhlI	GDGCHC	1 cut(s)	572
MluCI	AATT	4 cut(s)	67, 292, 360, 482
MlyI	GAGTC	2 cut(s)	377, 692
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	9 cut(s)	52, 134, 220, 338, 361, 499, 547, 573, 687
Mph1103I	ATGCAT	1 cut(s)	517
MseI	TTAA	2 cut(s)	107, 480
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	2 cut(s)	60, 559
Mva1269I	GAATGC	2 cut(s)	180, 517
MwoI	GCNNNNNNNGC	2 cut(s)	377, 673
NdeII	GATC	2 cut(s)	230, 527
NlaIII	CATG	6 cut(s)	37, 82, 431, 445, 637, 683
NlaIV	GGNNCC	6 cut(s)	58, 232, 529, 627, 762, 829
NmuCI	GTSAC	1 cut(s)	746
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	2 cut(s)	431, 637
PagI	TCATGA	2 cut(s)	78, 679
PaqCI	CACCTGC	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	223
PciI	ACATGT	1 cut(s)	427
PctI	GAATGC	2 cut(s)	180, 517
PfeI	GAWTC	1 cut(s)	803
PkrI	GCNGC	2 cut(s)	373, 666
PleI	GAGTC	2 cut(s)	377, 691
PpsI	GAGTC	2 cut(s)	377, 691
PscI	ACATGT	1 cut(s)	427
PspN4I	GGNNCC	6 cut(s)	58, 232, 529, 627, 762, 829
PspPI	GGNCC	2 cut(s)	252, 556
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	230, 527
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	4 cut(s)	104, 632, 657, 853
RsaNI	GTAC	4 cut(s)	103, 631, 656, 852
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	107, 480
SatI	GCNGC	2 cut(s)	372, 665
Sau3AI	GATC	2 cut(s)	230, 527
Sau96I	GGNCC	2 cut(s)	252, 556
ScaI	AGTACT	1 cut(s)	104
SchI	GAGTC	2 cut(s)	377, 692
SduI	GDGCHC	1 cut(s)	572
SetI	ASST	8 cut(s)	340, 379, 462, 546, 669, 742, 785, 838
SfaNI	GCATC	3 cut(s)	154, 379, 613
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	2 cut(s)	252, 556
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	4 cut(s)	67, 292, 360, 482
SseBI	AGGCCT	1 cut(s)	223
SspMI	CTAG	2 cut(s)	501, 651
StuI	AGGCCT	1 cut(s)	223
StyI	CCWWGG	2 cut(s)	523, 725
TaaI	ACNGT	2 cut(s)	400, 630
TaiI	ACGT	1 cut(s)	785
TasI	AATT	4 cut(s)	67, 292, 360, 482
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	803
Tru1I	TTAA	2 cut(s)	107, 480
Tru9I	TTAA	2 cut(s)	107, 480
TscAI	CASTG	2 cut(s)	97, 244
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	2 cut(s)	371, 664
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	5 cut(s)	95, 129, 295, 316, 807
TspRI	CASTG	2 cut(s)	97, 244
VpaK11BI	GGWCC	2 cut(s)	252, 556
XagI	CCTNNNNNAGG	1 cut(s)	342
XceI	RCATGY	2 cut(s)	431, 637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XspI	CTAG	2 cut(s)	501, 651
ZrmI	AGTACT	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.