Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Reverse (-)

26341238 .. 26346955

Gene Structure 5718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008159

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2595 bp

ATGGGAGACCTCGCCGCTGCTTCCAAGGAGGGCCCCAAGCTCCCCATCCCCGGCCAACGCAACGTCCTCATCACCAGCGCGCTGCCCTACGTCAACAACGTCCCTCATCTCGGCAACATCATCGGCTGCGTTCTCAGCGCCGACGTCTTCGCTCGCTACTGCCGTCTCCGGGGATACAACACCGTCTATATATGCGGCACCGATGAGTACGGCACCGCCACCGAGACCAAAGCCCTGGAGGAGAAGTGTAGCCCCAAGGAGATCTGCGATAAGTACTATGCGATTCATAGGCAGGTGTATGAGTGGTTCAATATTAGTTTTGACAAATTCGGGCGAACTTCGACGCCGGAGCAGACGGAGGTGTGCCAAGCGATTTTCAATAGGCTGCTGGAGAATAATTGGCTTTCTGAGAACACAATGCAGCAGCTATATTGTGATACTTGCACACGGTTTTTGGCCGACAGGCTCGTGGAGGGAACGTGCCCAACGCAAGGTTGTGATTATACTTCTGCAAGAGGAGATCAGTGTGAGAACTGTGGGAAGCTTTTAAACCCCACAGAATTAAAGGATCCGAAATGCAAGGTCTGTAAGTCGACTCCACGGATTCGTGATACAAACCATTTGTTTCTGGAACTGCCTTTGCTGAAGGATAGGTTGGAAGAGTATATTAATAAAATGTCAGTGGAGGGGTCTTGGAGCCAGAATGCCATTCAAGCAACAAATGCGTGGCTCAGAGAGGGGCTTAAACAACGGTGTATCACCAGAGATCTGAAGTGGGGGGTTCCAGTTCCACATGATAACTTCAGGGACAAGGTTTTCTATGTGTGGTTTGATGCGCCTATTGGATATGTTTCAATTACAAAATGCTACACTCCAGATTGGGAGAAATGGTGGAAGAATCCAGAGGATGTGGAGTTGTATCAGTTTATGGGCAAAGATAATGTGCCATTCCACACGGTGATGTTTCCTTCCACGCTTCTTGGAACTGGTGAAAATTGGACCTTAATGAAGACAATTAGTGTTACTGAATACTTGAACTATGAAGCAGGAAAGTTTTCCAAGAGTAAAGGGGTTGGAGTATTTGGAAACGATGCCAAAGATACAAACATTCCTGTTGAAGTATGGCGATATTACTTGCTAACCAATAGGCCCGAGGTGTCGGATACATTATTTACATGGGCGGATTTGCAAGCGAAGCTCAACAGTGAATTGCTGAATAATTTGGGCAACTTCATTAACCGAGTTTTGAGTTTTGTTGCCAAACCTTTAGGTCAAGGATATGACTCCATTATTCCAGATGCTCAAGATGCCATCTCTGATCCTTTGACAGAGAAAATAGCTGAAAAAGTGGGTAAATGTGTGGAGCAATATGTAGAGGCCATGGAGAAGGTAAAACTAAAGCAAGGACTCAAACTAGCAATGAGCATTTCAAGTGAAGGGAATGCATATCTGCAAGAAAGTCAGTTCTGGAAGCTTTACAAGGAGGATCAAACTCGCTGCTCCATTGTTATGAGAACTGCAGTGGGGCTAGTGCATCTTCTTGCTTGCTTATTAGAACCCTTCATGCCATCTTTTTCTGTTGAGGTATTTAAGCAGCTTAATTTGTCTCGTGAGACGCACATATCACTTTGTGATGATAAAGGCGATATTGATAGGGCAAGACGGCCATGGGAGATTGTACCTAGAGGTCACAAGATTGGGAAACCAGAGCCGTTGTTCAAGGAATTGAATGATGATGAAGTAGATTCTCTAAGGAAGAGGTTTGCTGGAAGTCAGGCCGATAGAAAGGAAAGGGAAGAAGCTGAAGCAGTGAAGTTGGCTGAGCAGCTCAAGAAATCAAAAGTTTCAGACAAGAGTGGAAAGAAGAAACAACAAGCCACAAAATCTGCAACTGAAGCAGAGATTTCCATATCTAGACTAGATATTCGCGTCGGCCTCATTACAAAAGCTCAGAAGCATCCTGATGCTGATGCACTTTATGTGGAAGAGATTGATGTTGGCGAAGGACAGCCTAGAACAGTTGTCAGTGGACTAGTCAAGTTTATACCTCTTGAAGAAATGCAGAATCGGAAGGTATGCGTCCTTTGCAACCTGAAGCCAGCGACCATGCGGGGTATTAAATCACAAGCGATGGTTCTTGCTGCTTCAAATAGTGACCACACCGCGAATACTAGCACTGAAAATCATGTGCCTGCCAGAAATCGATTCTTTACAGCGACTATTGCAAACATTTCTCTGTTCCCAAATCCTTCCTTAAGCAGTCAGTACATAGTTTATCTGTTTGCGGTGTTTTCAGACAATCTTCGACGTCCATGCATGAATGAATTTATACACTGTTTTATTCCTGACTGGGGCATCCTTCAGGTTGAGTTGGTTGATCCACCAAAATCTGCTCAAGTTGGGGAGAGAGTTACATTTCCGGGGTTCGAAGGTGAGCCTGATGATGTGTTGAACCCCAAGAAGAAGGTTTGGGAAACCCTACAGGTAGATTTGCACAGTAACACTGAGCTAGTCGCATGCTACAAAGATATTCCCCTCACTACATCAGCTGGTGTTTGCACTGTTAAATCTATTTGTGGTGGGTCAATTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

865

Amino Acids

97.62

Weight (kDa)

6.31

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	22 - 416	1.6e-154	tRNA synthetases class I (M)
tRNA-synt_1	PF00133	24 - 265	2.1e-08	tRNA synthetases class I (I, L, M and V)
Anticodon_3	PF19303	443 - 592	1.9e-20	Anticodon binding domain of methionyl tRNA ligase
tRNA_bind	PF01588	642 - 721	2.2e-29	Putative tRNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	283
AatII	GACGTC	2 cut(s)	147, 2311
Acc36I	ACCTGC	1 cut(s)	283
AccB1I	GGYRCC	2 cut(s)	197, 212
AccI	GTMKAC	1 cut(s)	593
AccII	CGCG	3 cut(s)	80, 1929, 2165
AciI	CCGC	7 cut(s)	15, 195, 216, 1181, 2110, 2163, 2285
AclWI	GGATC	5 cut(s)	563, 576, 1313, 1494, 2372
AcoI	YGGCCR	3 cut(s)	52, 456, 1664
AcsI	RAATTY	2 cut(s)	326, 2324
AcuI	CTGAAG	7 cut(s)	665, 787, 791, 1824, 1914, 2114, 2345
AcyI	GRCGYC	3 cut(s)	144, 344, 2308
AdeI	CACNNNGTG	2 cut(s)	958, 1631
AfaI	GTAC	4 cut(s)	209, 275, 1680, 2267
AfiI	CCNNNNNNNGG	5 cut(s)	50, 110, 169, 491, 2351
AflII	CTTAAG	1 cut(s)	2254
AhlI	ACTAGT	1 cut(s)	2032
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
Alw26I	GTCTC	4 cut(s)	170, 218, 1607, 1611
AlwI	GGATC	5 cut(s)	563, 576, 1313, 1494, 2372
Ama87I	CYCGRG	1 cut(s)	1151
AoxI	GGCC	8 cut(s)	31, 52, 456, 1148, 1377, 1664, 1776, 1933
ApaI	GGGCCC	1 cut(s)	35
ApoI	RAATTY	2 cut(s)	326, 2324
ArsI	GACNNNNNNTTYG	2 cut(s)	1908, 1940
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	1054
AspLEI	GCGC	4 cut(s)	80, 82, 140, 838
AspS9I	GGNCC	4 cut(s)	31, 32, 999, 1149
AsuC2I	CCSGG	3 cut(s)	51, 170, 2421
AsuHPI	GGTGA	5 cut(s)	64, 751, 970, 1001, 2444
AsuII	TTCGAA	1 cut(s)	2427
AvaI	CYCGRG	1 cut(s)	1151
AvaII	GGWCC	1 cut(s)	999
BaeGI	GKGCMC	2 cut(s)	35, 485
BamHI	GGATCC	1 cut(s)	568
BanI	GGYRCC	2 cut(s)	197, 212
BanII	GRGCYC	1 cut(s)	35
BauI	CACGAG	2 cut(s)	467, 1608
BbsI	GAAGAC	2 cut(s)	139, 1016
BccI	CCATC	4 cut(s)	53, 1319, 1576, 2125
BceAI	ACGGC	4 cut(s)	147, 226, 1679, 1696
BcgI	CGANNNNNNTGC	4 cut(s)	103, 137, 2295, 2329
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	2 cut(s)	167, 1156
BcnI	CCSGG	3 cut(s)	51, 170, 2421
BcoDI	GTCTC	4 cut(s)	170, 218, 1607, 1611
BcuI	ACTAGT	1 cut(s)	2032
BfaI	CTAG	9 cut(s)	1415, 1529, 1683, 1914, 1919, 2013, 2033, 2172, 2510
BfmI	CTRYAG	2 cut(s)	1518, 2480
BfoI	RGCGCY	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	2254
BfuAI	ACCTGC	1 cut(s)	283
BfuI	GTATCC	2 cut(s)	167, 1156
BglII	AGATCT	2 cut(s)	261, 766
BlpI	GCTNAGC	1 cut(s)	1821
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	4 cut(s)	51, 170, 236, 2421
Bme18I	GGWCC	1 cut(s)	999
BmeT110I	CYCGRG	1 cut(s)	1151
BmgT120I	GGNCC	4 cut(s)	31, 32, 999, 1149
BmiI	GGNNCC	7 cut(s)	33, 34, 199, 214, 570, 698, 783
BmrFI	CCNGG	4 cut(s)	51, 170, 236, 2421
BmrI	ACTGGG	1 cut(s)	2359
BmsI	GCATC	9 cut(s)	823, 1081, 1288, 1297, 1543, 1954, 1960, 1966, 2364
BmuI	ACTGGG	1 cut(s)	2359
BpiI	GAAGAC	2 cut(s)	139, 1016
BpmI	CTGGAG	3 cut(s)	257, 410, 858
Bpu1102I	GCTNAGC	1 cut(s)	1821
Bpu14I	TTCGAA	1 cut(s)	2427
BpuEI	CTTGAG	3 cut(s)	1287, 1814, 2379
BpuMI	CCSGG	3 cut(s)	51, 170, 2421
Bsa29I	ATCGAT	1 cut(s)	2203
BsaHI	GRCGYC	3 cut(s)	144, 344, 2308
BsaI	GGTCTC	1 cut(s)	218
BsaXI	ACNNNNNCTCC	6 cut(s)	230, 260, 464, 494, 875, 905
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 110, 169, 491, 2351
Bse1I	ACTGG	3 cut(s)	785, 991, 2354
Bse3DI	GCAATG	1 cut(s)	1425
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	2203
BseGI	GGATG	4 cut(s)	45, 913, 1957, 2355
BseLI	CCNNNNNNNGG	5 cut(s)	50, 110, 169, 491, 2351
BseMI	GCAATG	1 cut(s)	1425
BseMII	CTCAG	6 cut(s)	148, 399, 745, 1812, 1964, 2496
BseNI	ACTGG	3 cut(s)	785, 991, 2354
BsePI	GCGCGC	1 cut(s)	78
BseRI	GAGGAG	2 cut(s)	254, 531
BseSI	GKGCMC	2 cut(s)	35, 485
Bsh1236I	CGCG	3 cut(s)	80, 1929, 2165
BshFI	GGCC	8 cut(s)	33, 54, 458, 1150, 1379, 1666, 1778, 1935
BshNI	GGYRCC	2 cut(s)	197, 212
BshVI	ATCGAT	1 cut(s)	2203
BsiHKCI	CYCGRG	1 cut(s)	1151
BsiSI	CCGG	4 cut(s)	51, 169, 347, 2420
BslFI	GGGAC	2 cut(s)	86, 821
BslI	CCNNNNNNNGG	5 cut(s)	50, 110, 169, 491, 2351
BsmAI	GTCTC	4 cut(s)	170, 218, 1607, 1611
BsmBI	CGTCTC	2 cut(s)	170, 1607
BsmFI	GGGAC	2 cut(s)	86, 821
BsmI	GAATGC	2 cut(s)	709, 1447
BsnI	GGCC	8 cut(s)	33, 54, 458, 1150, 1379, 1666, 1778, 1935
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	1151
Bsp119I	TTCGAA	1 cut(s)	2427
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	35, 485
Bsp143I	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2377
Bsp1720I	GCTNAGC	1 cut(s)	1821
Bsp19I	CCATGG	2 cut(s)	1380, 1667
BspACI	CCGC	7 cut(s)	15, 195, 216, 1181, 2110, 2163, 2285
BspANI	GGCC	8 cut(s)	33, 54, 458, 1150, 1379, 1666, 1778, 1935
BspCNI	CTCAG	6 cut(s)	147, 400, 744, 1813, 1963, 2497
BspDI	ATCGAT	1 cut(s)	2203
BspFNI	CGCG	3 cut(s)	80, 1929, 2165
BspLI	GGNNCC	7 cut(s)	33, 34, 199, 214, 570, 698, 783
BspMAI	CTGCAG	1 cut(s)	1522
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	5 cut(s)	563, 576, 1313, 1494, 2372
BspT104I	TTCGAA	1 cut(s)	2427
BspT107I	GGYRCC	2 cut(s)	197, 212
BspTI	CTTAAG	1 cut(s)	2254
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	1425
BsrI	ACTGG	3 cut(s)	785, 991, 2354
BssHII	GCGCGC	1 cut(s)	78
BssMI	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2377
BssNI	GRCGYC	3 cut(s)	144, 344, 2308
BssSI	CACGAG	2 cut(s)	467, 1608
BssT1I	CCWWGG	4 cut(s)	24, 255, 1380, 1667
Bst2BI	CACGAG	2 cut(s)	467, 1608
Bst2UI	CCWGG	1 cut(s)	236
Bst6I	CTCTTC	3 cut(s)	654, 1751, 1980
BstACI	GRCGYC	3 cut(s)	144, 344, 2308
BstAFI	CTTAAG	1 cut(s)	2254
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstBI	TTCGAA	1 cut(s)	2427
BstC8I	GCNNGC	7 cut(s)	80, 154, 1191, 1546, 2100, 2193, 2518
BstDEI	CTNAG	7 cut(s)	134, 408, 731, 1751, 1821, 1950, 2505
BstDSI	CCRYGG	3 cut(s)	599, 1380, 1667
BstF5I	GGATG	4 cut(s)	45, 913, 1957, 2355
BstFNI	CGCG	3 cut(s)	80, 1929, 2165
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	4 cut(s)	80, 82, 140, 838
BstKTI	GATC	7 cut(s)	264, 523, 571, 769, 1321, 1489, 2380
BstMAI	GTCTC	4 cut(s)	170, 218, 1607, 1611
BstMBI	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2377
BstMWI	GCNNNNNNNGC	8 cut(s)	135, 713, 722, 1195, 1307, 1895, 2085, 2222
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	2520
BstSCI	CCNGG	4 cut(s)	49, 168, 234, 2419
BstSFI	CTRYAG	2 cut(s)	1518, 2480
BstSLI	GKGCMC	2 cut(s)	35, 485
BstUI	CGCG	3 cut(s)	80, 1929, 2165
BstV2I	GAAGAC	2 cut(s)	139, 1016
BstX2I	RGATCY	3 cut(s)	261, 568, 766
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	3 cut(s)	261, 568, 766
Bsu15I	ATCGAT	1 cut(s)	2203
BsuI	GTATCC	2 cut(s)	167, 1156
BsuRI	GGCC	8 cut(s)	33, 54, 458, 1150, 1379, 1666, 1778, 1935
BsuTUI	ATCGAT	1 cut(s)	2203
BtgI	CCRYGG	3 cut(s)	599, 1380, 1667
BtgZI	GCGATG	1 cut(s)	2144
BtsCI	GGATG	4 cut(s)	45, 913, 1957, 2355
BtsI	GCAGTG	2 cut(s)	1527, 1815
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	7 cut(s)	80, 154, 1191, 1546, 2100, 2193, 2518
CfoI	GCGC	4 cut(s)	80, 82, 140, 838
Cfr13I	GGNCC	4 cut(s)	31, 32, 999, 1149
ClaI	ATCGAT	1 cut(s)	2203
CseI	GACGC	4 cut(s)	352, 1624, 1918, 2068
Csp6I	GTAC	4 cut(s)	208, 274, 1679, 2266
CspCI	CAANNNNNGTGG	2 cut(s)	961, 996
CviQI	GTAC	4 cut(s)	208, 274, 1679, 2266
DdeI	CTNAG	7 cut(s)	134, 408, 731, 1751, 1821, 1950, 2505
DpnI	GATC	7 cut(s)	263, 522, 570, 768, 1320, 1488, 2379
DpnII	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2377
DraI	TTTAAA	1 cut(s)	549
DraIII	CACNNNGTG	2 cut(s)	958, 1631
EaeI	YGGCCR	3 cut(s)	52, 456, 1664
Eam1104I	CTCTTC	3 cut(s)	654, 1751, 1980
EarI	CTCTTC	3 cut(s)	654, 1751, 1980
EciI	GGCGGA	1 cut(s)	1196
Eco130I	CCWWGG	4 cut(s)	24, 255, 1380, 1667
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	999
Eco57I	CTGAAG	7 cut(s)	665, 787, 791, 1824, 1914, 2114, 2345
Eco88I	CYCGRG	1 cut(s)	1151
EcoO109I	RGGNCCY	2 cut(s)	31, 32
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	4 cut(s)	24, 255, 1380, 1667
EcoT22I	ATGCAT	2 cut(s)	1447, 2318
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	4 cut(s)	24, 255, 1380, 1667
Esp3I	CGTCTC	2 cut(s)	170, 1607
FaqI	GGGAC	2 cut(s)	86, 821
FauI	CCCGC	1 cut(s)	2103
FblI	GTMKAC	1 cut(s)	593
FokI	GGATG	4 cut(s)	32, 920, 1944, 2342
FriOI	GRGCYC	1 cut(s)	35
FspBI	CTAG	9 cut(s)	1415, 1529, 1683, 1914, 1919, 2013, 2033, 2172, 2510
GlaI	GCGC	4 cut(s)	79, 81, 139, 837
GsuI	CTGGAG	3 cut(s)	257, 410, 858
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	8 cut(s)	33, 54, 458, 1150, 1379, 1666, 1778, 1935
HapII	CCGG	4 cut(s)	51, 169, 347, 2420
HgaI	GACGC	4 cut(s)	352, 1624, 1918, 2068
HhaI	GCGC	4 cut(s)	80, 82, 140, 838
Hin1I	GRCGYC	3 cut(s)	144, 344, 2308
Hin6I	GCGC	4 cut(s)	78, 80, 138, 836
HinP1I	GCGC	4 cut(s)	78, 80, 138, 836
HincII	GTYRAC	2 cut(s)	94, 594
HindII	GTYRAC	2 cut(s)	94, 594
HindIII	AAGCTT	2 cut(s)	542, 1472
HinfI	GANTC	9 cut(s)	283, 595, 604, 898, 1283, 1407, 1745, 2065, 2205
HpaII	CCGG	4 cut(s)	51, 169, 347, 2420
HphI	GGTGA	5 cut(s)	64, 751, 970, 1001, 2444
Hpy166II	GTNNAC	3 cut(s)	94, 594, 2030
Hpy8I	GTNNAC	3 cut(s)	94, 594, 2030
Hpy99I	CGWCG	4 cut(s)	146, 346, 1934, 2310
HpyCH4IV	ACGT	6 cut(s)	63, 90, 99, 144, 479, 2308
HpyF10VI	GCNNNNNNNGC	8 cut(s)	135, 713, 722, 1195, 1307, 1895, 2085, 2222
HpyF3I	CTNAG	7 cut(s)	134, 408, 731, 1751, 1821, 1950, 2505
HpySE526I	ACGT	6 cut(s)	63, 90, 99, 144, 479, 2308
Hsp92I	GRCGYC	3 cut(s)	144, 344, 2308
HspAI	GCGC	4 cut(s)	78, 80, 138, 836
Kzo9I	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2377
LmnI	GCTCC	5 cut(s)	45, 349, 696, 1363, 1505
LweI	GCATC	9 cut(s)	823, 1081, 1288, 1297, 1543, 1954, 1960, 1966, 2364
MaeI	CTAG	9 cut(s)	1415, 1529, 1683, 1914, 1919, 2013, 2033, 2172, 2510
MaeII	ACGT	6 cut(s)	63, 90, 99, 144, 479, 2308
MaeIII	GTNAC	5 cut(s)	1021, 1688, 2153, 2410, 2498
MalI	GATC	7 cut(s)	263, 522, 570, 768, 1320, 1488, 2379
MboI	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2377
MflI	RGATCY	3 cut(s)	261, 568, 766
MhlI	GDGCHC	2 cut(s)	35, 485
MlyI	GAGTC	3 cut(s)	589, 1277, 1401
MmeI	TCCRAC	3 cut(s)	636, 1054, 1140
Mph1103I	ATGCAT	2 cut(s)	1447, 2318
MroXI	GAANNNNTTC	1 cut(s)	1054
MslI	CAYNNNNRTG	3 cut(s)	959, 1508, 1962
MspA1I	CMGCKG	2 cut(s)	17, 2549
MspCI	CTTAAG	1 cut(s)	2254
MspI	CCGG	4 cut(s)	51, 169, 347, 2420
MspR9I	CCNGG	4 cut(s)	51, 170, 236, 2421
Mva1269I	GAATGC	2 cut(s)	709, 1447
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	3 cut(s)	80, 1929, 2165
MwoI	GCNNNNNNNGC	8 cut(s)	135, 713, 722, 1195, 1307, 1895, 2085, 2222
NciI	CCSGG	3 cut(s)	51, 170, 2421
NcoI	CCATGG	2 cut(s)	1380, 1667
NdeII	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2377
NlaIV	GGNNCC	7 cut(s)	33, 34, 199, 214, 570, 698, 783
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	1688, 2153
NsiI	ATGCAT	2 cut(s)	1447, 2318
NspI	RCATGY	1 cut(s)	2520
NspV	TTCGAA	1 cut(s)	2427
PaeI	GCATGC	1 cut(s)	2520
PaqCI	CACCTGC	1 cut(s)	283
PauI	GCGCGC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 160
PctI	GAATGC	2 cut(s)	709, 1447
PdmI	GAANNNNTTC	1 cut(s)	1054
PfeI	GAWTC	6 cut(s)	283, 604, 898, 1745, 2065, 2205
PleI	GAGTC	3 cut(s)	589, 1277, 1401
PpsI	GAGTC	3 cut(s)	589, 1277, 1401
PshBI	ATTAAT	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	7 cut(s)	33, 34, 199, 214, 570, 698, 783
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	4 cut(s)	31, 32, 999, 1149
PsrI	GAACNNNNNNTAC	2 cut(s)	290, 322
PstI	CTGCAG	1 cut(s)	1522
PsuI	RGATCY	3 cut(s)	261, 568, 766
PteI	GCGCGC	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	2549
RsaI	GTAC	4 cut(s)	209, 275, 1680, 2267
RsaNI	GTAC	4 cut(s)	208, 274, 1679, 2266
RseI	CAYNNNNRTG	3 cut(s)	959, 1508, 1962
SalI	GTCGAC	1 cut(s)	592
Sau3AI	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2377
Sau96I	GGNCC	4 cut(s)	31, 32, 999, 1149
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	3 cut(s)	589, 1277, 1401
ScrFI	CCNGG	4 cut(s)	51, 170, 236, 2421
SduI	GDGCHC	2 cut(s)	35, 485
SfaNI	GCATC	9 cut(s)	823, 1081, 1288, 1297, 1543, 1954, 1960, 1966, 2364
SfcI	CTRYAG	2 cut(s)	1518, 2480
SfuI	TTCGAA	1 cut(s)	2427
SinI	GGWCC	1 cut(s)	999
SmiMI	CAYNNNNRTG	3 cut(s)	959, 1508, 1962
SmlI	CTYRAG	4 cut(s)	1302, 1829, 2254, 2394
SmoI	CTYRAG	4 cut(s)	1302, 1829, 2254, 2394
SpeI	ACTAGT	1 cut(s)	2032
SphI	GCATGC	1 cut(s)	2520
SsiI	CCGC	7 cut(s)	15, 195, 216, 1181, 2110, 2163, 2285
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	9 cut(s)	1415, 1529, 1683, 1914, 1919, 2013, 2033, 2172, 2510
StyD4I	CCNGG	4 cut(s)	49, 168, 234, 2419
StyI	CCWWGG	4 cut(s)	24, 255, 1380, 1667
TaiI	ACGT	6 cut(s)	66, 93, 102, 147, 482, 2311
TaqI	TCGA	5 cut(s)	341, 593, 2203, 2305, 2427
TatI	WGTACW	2 cut(s)	273, 2265
TauI	GCSGC	2 cut(s)	17, 198
TfiI	GAWTC	6 cut(s)	283, 604, 898, 1745, 2065, 2205
TseFI	GTSAC	2 cut(s)	1688, 2153
Tsp45I	GTSAC	2 cut(s)	1688, 2153
TspDTI	ATGAA	8 cut(s)	275, 1022, 1056, 1222, 1552, 1752, 2333, 2337
TspGWI	ACGGA	2 cut(s)	371, 616
Vha464I	CTTAAG	1 cut(s)	2254
VpaK11BI	GGWCC	1 cut(s)	999
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	2 cut(s)	326, 2324
XbaI	TCTAGA	1 cut(s)	1913
XceI	RCATGY	1 cut(s)	2520
XmiI	GTMKAC	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	1054
XspI	CTAG	9 cut(s)	1415, 1529, 1683, 1914, 1919, 2013, 2033, 2172, 2510
ZraI	GACGTC	2 cut(s)	145, 2309
ZrmI	AGTACT	1 cut(s)	275
Zsp2I	ATGCAT	2 cut(s)	1447, 2318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.