Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Reverse (-)

16387678 .. 16389820

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0098800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

ATGTCTTCCTTCAAAGCTTACGGCAAAGTCAGTGAATCCGATCAAGCCAAGCTTGATGCTCGTCGCAAGACTCGCAGGAGAGTCGCCATCATATCCATTTCCTCCATAGTTCTTGTCTGCGTCATAGTTGCCGCCGTGGTTGGAACCGCTACTCATAACTCCAAAAAAGGTGACGACAATAGCAAAGGTACGCTTTCCGCTTCCGTCAAAGCCGTTTGTGACGTGACATTGTACCAGGACTCGTGTTATTCTAGTCTTGGTCCTATTGTCAACTCCAGCAATTTTAAGCCTGAGGATTTGTTTAAGTTGTCAATTCAAGTGGCAATTACTGAACTGTCCAAAGCTGCTACTCAAATTTCCGATCAAGGGCTCTTCAAAGGTACTGTCACAGACAAATTGTCCGTGGCGGCTTTGAAAAACTGCGGCGAGCTTCTGAGTCTTGCCTTGGATCATCTCAACGAGTCGTTGTCCGGGGATGGTTCCTTGCTCGAAGTGGTTGAAGATCTTAAGACATGGTTGAGCTCTGCAGGAACTTACCAGCAGTCATGTGTAGATGAGTTTGAGGATGCAAAAGGAGATCTAAAGGCTACCATTGAAAAGTATCTCAAGACTTCTACTGAACTAACTAGTAACAGCCTTGCCATTGTCTCTTGGATTTCGAAAGTAGCCAACTCTGTGAACCTAAGGCGGTTGCTGAGTCACGATGGTGCCGCAGCTAGCCATGGCATTCCGGAGTGGCTGCACCAGACAGACCGCAGGCTAATTGAAAGTTCAGATTTGAGGAACAAGGCCAACATTGTTGTGGCCAAAGATGGGAGTGGCAAGTACAAGACAATAGGTGCTGCACTGAAGGCTGTGCCGGACAAAAGCAAGAAGAGAACAGTCATCTACGTGAAGAAGGGTGTTTATTTCGAGAATGTTCGAGTGGAGAAATCCAAGTGGAATGTTGTGGTGGTCGGCGATGGAATGACTTCAACTATTGTGTCTGCCAGCCTCAACGTTGTGGATGGAACTCCCACCTTTTCCAGTGCAACATTCGCGGTATTTGGTAAGGGATTCGTCGCCAGAGACATTGGATTTCGTAACACAGCCGGAGCGGCCAAGCACCAGGCGGTGGCACTAATGTCGAGTGCTGACCAGACTGTGTTTTACAGATGCCACATTGATGCATTCCAGGACTCGCTCTACGTTCATGCCAATCGCCAATTCTACCGAGAATGCAACATTTACGGAACAGTTGATTTCATTTTCGGAAACTCAGCAGTAGTCCTCCAAAACTGTGAGGTGTTCCCCAAGGTACCAATGGTTGGCCAGCAGAACACAATCACGGCACAAGGCAAAATCGACCCTAACCAAAACACGGGAATCGCATTTCAGAACTGCACCATTTCGCCTTTTGGAGACTTGTCTTCGGTTAAGACTTACCTCGGGAGACCTTGGAAGAATTACTCCACAACAGTGTACATGCAAACATTCATGGGAAGCTTGATTCACCCAGATGGATGGTTGCCATGGGTAGGCACAACAGCACCTGACACCATTTTTTACTCCGAGTTTCAGAATTTCGGACCTGGTTCTGTGACCAAGAATAGAGTTAAGTGGAAGGGCTTGAAAACAATAACCAGCAAAGTGGCCGGCAAATTTACCGTGCAATCATTTCTTGAAGGAACCAATTGGATCTCCGATGCAAGTGTTCCCTATAAATCCAACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

571

Amino Acids

62.13

Weight (kDa)

9.1

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	68 - 215	4.6e-31	Plant invertase/pectin methylesterase inhibitor
Pectinesterase	PF01095	265 - 556	4.9e-136	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1297
AccB1I	GGYRCC	2 cut(s)	707, 1297
AccB7I	CCANNNNNTGG	2 cut(s)	1114, 1307
AccBSI	CCGCTC	1 cut(s)	1097
AccII	CGCG	1 cut(s)	1040
AccIII	TCCGGA	1 cut(s)	730
AclI	AACGTT	1 cut(s)	999
AclWI	GGATC	2 cut(s)	456, 1685
AcoI	YGGCCR	4 cut(s)	804, 1098, 1309, 1632
AcsI	RAATTY	3 cut(s)	354, 1561, 1640
AcuI	CTGAAG	1 cut(s)	869
AfaI	GTAC	6 cut(s)	190, 233, 382, 827, 1299, 1463
AfiI	CCNNNNNNNGG	6 cut(s)	366, 813, 1114, 1307, 1360, 1517
AflII	CTTAAG	1 cut(s)	506
AhdI	GACNNNNNGTC	1 cut(s)	397
AhlI	ACTAGT	1 cut(s)	626
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	4 cut(s)	234, 1107, 1173, 1570
AjuI	GAANNNNNNNTTGG	2 cut(s)	1190, 1222
AleI	CACNNNNGTG	2 cut(s)	705, 1457
AluBI	AGCT	7 cut(s)	17, 52, 344, 430, 522, 716, 1485
AluI	AGCT	7 cut(s)	17, 52, 344, 430, 522, 716, 1485
Alw21I	GWGCWC	1 cut(s)	524
Alw26I	GTCTC	4 cut(s)	652, 1062, 1395, 1426
AlwI	GGATC	2 cut(s)	456, 1685
AlwNI	CAGNNNCTG	1 cut(s)	1532
Ama87I	CYCGRG	1 cut(s)	1427
Aor13HI	TCCGGA	1 cut(s)	730
AoxI	GGCC	5 cut(s)	789, 804, 1098, 1309, 1632
ApeKI	GCWGC	4 cut(s)	344, 713, 739, 842
ApoI	RAATTY	3 cut(s)	354, 1561, 1640
ArsI	GACNNNNNNTTYG	2 cut(s)	369, 401
Asp700I	GAANNNNTTC	1 cut(s)	970
Asp718I	GGTACC	1 cut(s)	1297
AspS9I	GGNCC	2 cut(s)	260, 1568
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	182, 1484
AsuII	TTCGAA	1 cut(s)	659
AsuNHI	GCTAGC	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	1427
AvaII	GGWCC	2 cut(s)	260, 1568
AxyI	CCTNAGG	2 cut(s)	291, 683
BalI	TGGCCA	2 cut(s)	806, 1311
BanI	GGYRCC	2 cut(s)	707, 1297
BanII	GRGCYC	2 cut(s)	372, 524
BauI	CACGAG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	1401
Bbv12I	GWGCWC	1 cut(s)	524
BbvI	GCAGC	4 cut(s)	331, 725, 726, 829
BccI	CCATC	8 cut(s)	95, 470, 698, 806, 956, 1001, 1493, 1497
BceAI	ACGGC	4 cut(s)	37, 119, 197, 1344
BcgI	CGANNNNNNTGC	4 cut(s)	64, 98, 1107, 1141
BciT130I	CCWGG	4 cut(s)	236, 1109, 1175, 1572
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	4 cut(s)	652, 1062, 1395, 1426
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	3 cut(s)	252, 627, 717
BfmI	CTRYAG	1 cut(s)	525
BfrI	CTTAAG	1 cut(s)	506
BglI	GCCNNNNNGGC	1 cut(s)	1097
BglII	AGATCT	2 cut(s)	502, 577
BisI	GCNGC	9 cut(s)	132, 345, 408, 424, 711, 714, 740, 843, 1098
BlsI	GCNGC	9 cut(s)	133, 346, 409, 425, 712, 715, 741, 844, 1099
Bme1390I	CCNGG	5 cut(s)	236, 472, 1109, 1175, 1572
Bme18I	GGWCC	2 cut(s)	260, 1568
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	1427
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	260, 1568
BmiI	GGNNCC	5 cut(s)	145, 481, 709, 1299, 1669
BmrFI	CCNGG	5 cut(s)	236, 472, 1109, 1175, 1572
BmsI	GCATC	5 cut(s)	46, 556, 1145, 1156, 1675
BmtI	GCTAGC	1 cut(s)	720
BpiI	GAAGAC	1 cut(s)	1401
BpmI	CTGGAG	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	659
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	472
BsaAI	YACGTR	1 cut(s)	892
BsaI	GGTCTC	1 cut(s)	1426
BsaJI	CCNNGG	9 cut(s)	135, 402, 444, 471, 721, 1293, 1426, 1436, 1511
BsaWI	WCCGGW	1 cut(s)	730
Bsc4I	CCNNNNNNNGG	6 cut(s)	366, 813, 1114, 1307, 1360, 1517
Bse118I	RCCGGY	1 cut(s)	1634
Bse1I	ACTGG	1 cut(s)	1026
Bse21I	CCTNAGG	2 cut(s)	291, 683
BseAI	TCCGGA	1 cut(s)	730
BseBI	CCWGG	4 cut(s)	236, 1109, 1175, 1572
BseDI	CCNNGG	9 cut(s)	135, 402, 444, 471, 721, 1293, 1426, 1436, 1511
BseGI	GGATG	4 cut(s)	481, 571, 1012, 1508
BseLI	CCNNNNNNNGG	6 cut(s)	366, 813, 1114, 1307, 1360, 1517
BseMII	CTCAG	4 cut(s)	282, 425, 686, 1272
BseNI	ACTGG	1 cut(s)	1026
BseXI	GCAGC	4 cut(s)	331, 725, 726, 829
BsgI	GTGCAG	3 cut(s)	725, 828, 1366
Bsh1236I	CGCG	1 cut(s)	1040
BshFI	GGCC	5 cut(s)	791, 806, 1100, 1311, 1634
BshNI	GGYRCC	2 cut(s)	707, 1297
BsiHKAI	GWGCWC	1 cut(s)	524
BsiHKCI	CYCGRG	1 cut(s)	1427
BsiSI	CCGG	5 cut(s)	471, 731, 860, 1092, 1635
BslI	CCNNNNNNNGG	6 cut(s)	366, 813, 1114, 1307, 1360, 1517
BsmAI	GTCTC	4 cut(s)	652, 1062, 1395, 1426
BsmI	GAATGC	3 cut(s)	726, 1169, 1223
BsnI	GGCC	5 cut(s)	791, 806, 1100, 1311, 1634
Bso31I	GGTCTC	1 cut(s)	1426
BsoBI	CYCGRG	1 cut(s)	1427
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	372, 524
Bsp13I	TCCGGA	1 cut(s)	730
Bsp1407I	TGTACA	1 cut(s)	1461
Bsp143I	GATC	6 cut(s)	40, 361, 448, 502, 577, 1677
Bsp19I	CCATGG	2 cut(s)	721, 1511
BspANI	GGCC	5 cut(s)	791, 806, 1100, 1311, 1634
BspCNI	CTCAG	4 cut(s)	283, 426, 687, 1271
BspEI	TCCGGA	1 cut(s)	730
BspFNI	CGCG	1 cut(s)	1040
BspLI	GGNNCC	5 cut(s)	145, 481, 709, 1299, 1669
BspMAI	CTGCAG	1 cut(s)	529
BspOI	GCTAGC	1 cut(s)	720
BspPI	GGATC	2 cut(s)	456, 1685
BspQI	GCTCTTC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	659
BspT107I	GGYRCC	2 cut(s)	707, 1297
BspTI	CTTAAG	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	1426
BsrBI	CCGCTC	1 cut(s)	1097
BsrFI	RCCGGY	1 cut(s)	1634
BsrGI	TGTACA	1 cut(s)	1461
BsrI	ACTGG	1 cut(s)	1026
BssAI	RCCGGY	1 cut(s)	1634
BssECI	CCNNGG	9 cut(s)	135, 402, 444, 471, 721, 1293, 1426, 1436, 1511
BssMI	GATC	6 cut(s)	40, 361, 448, 502, 577, 1677
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	5 cut(s)	444, 721, 1293, 1436, 1511
Bst2BI	CACGAG	1 cut(s)	241
Bst2UI	CCWGG	4 cut(s)	236, 1109, 1175, 1572
Bst4CI	ACNGT	8 cut(s)	336, 385, 883, 1144, 1237, 1280, 1459, 1648
Bst6I	CTCTTC	2 cut(s)	377, 869
BstAFI	CTTAAG	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	1461
BstBAI	YACGTR	1 cut(s)	892
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	6 cut(s)	428, 718, 758, 991, 1313, 1636
BstDEI	CTNAG	5 cut(s)	291, 434, 683, 695, 1258
BstDSI	CCRYGG	4 cut(s)	135, 402, 721, 1511
BstF5I	GGATG	4 cut(s)	481, 571, 1012, 1508
BstFNI	CGCG	1 cut(s)	1040
BstKTI	GATC	6 cut(s)	43, 364, 451, 505, 580, 1680
BstMAI	GTCTC	4 cut(s)	652, 1062, 1395, 1426
BstMBI	GATC	6 cut(s)	40, 361, 448, 502, 577, 1677
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 851, 1037, 1097
BstNI	CCWGG	4 cut(s)	236, 1109, 1175, 1572
BstNSI	RCATGY	1 cut(s)	1468
BstSCI	CCNGG	5 cut(s)	234, 470, 1107, 1173, 1570
BstSFI	CTRYAG	1 cut(s)	525
BstUI	CGCG	1 cut(s)	1040
BstV1I	GCAGC	4 cut(s)	331, 725, 726, 829
BstV2I	GAAGAC	1 cut(s)	1401
BstX2I	RGATCY	3 cut(s)	502, 577, 1677
BstXI	CCANNNNNNTGG	2 cut(s)	1503, 1630
BstYI	RGATCY	3 cut(s)	502, 577, 1677
Bsu36I	CCTNAGG	2 cut(s)	291, 683
BsuRI	GGCC	5 cut(s)	791, 806, 1100, 1311, 1634
BtgI	CCRYGG	4 cut(s)	135, 402, 721, 1511
BtgZI	GCGATG	1 cut(s)	975
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	4 cut(s)	481, 571, 1012, 1508
BtsIMutI	CAGTG	4 cut(s)	37, 845, 1033, 1464
Cac8I	GCNNGC	6 cut(s)	428, 718, 758, 991, 1313, 1636
CaiI	CAGNNNCTG	1 cut(s)	1532
Cfr10I	RCCGGY	1 cut(s)	1634
Cfr13I	GGNCC	2 cut(s)	260, 1568
CseI	GACGC	1 cut(s)	109
CsiI	ACCWGGT	1 cut(s)	1570
Csp6I	GTAC	6 cut(s)	189, 232, 381, 826, 1298, 1462
CspCI	CAANNNNNGTGG	2 cut(s)	300, 335
CviAII	CATG	7 cut(s)	513, 546, 722, 1193, 1465, 1477, 1512
CviQI	GTAC	6 cut(s)	189, 232, 381, 826, 1298, 1462
DdeI	CTNAG	5 cut(s)	291, 434, 683, 695, 1258
DpnI	GATC	6 cut(s)	42, 363, 450, 504, 579, 1679
DpnII	GATC	6 cut(s)	40, 361, 448, 502, 577, 1677
DriI	GACNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	4 cut(s)	804, 1098, 1309, 1632
Eam1104I	CTCTTC	2 cut(s)	377, 869
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EarI	CTCTTC	2 cut(s)	377, 869
Ecl136II	GAGCTC	1 cut(s)	522
Eco130I	CCWWGG	5 cut(s)	444, 721, 1293, 1436, 1511
Eco24I	GRGCYC	2 cut(s)	372, 524
Eco31I	GGTCTC	1 cut(s)	1426
Eco47I	GGWCC	2 cut(s)	260, 1568
Eco53kI	GAGCTC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	869
Eco81I	CCTNAGG	2 cut(s)	291, 683
Eco88I	CYCGRG	1 cut(s)	1427
EcoICRI	GAGCTC	1 cut(s)	522
EcoRII	CCWGG	4 cut(s)	234, 1107, 1173, 1570
EcoT14I	CCWWGG	5 cut(s)	444, 721, 1293, 1436, 1511
EcoT22I	ATGCAT	1 cut(s)	1171
EcoT38I	GRGCYC	2 cut(s)	372, 524
ErhI	CCWWGG	5 cut(s)	444, 721, 1293, 1436, 1511
FaeI	CATG	7 cut(s)	516, 549, 725, 1196, 1468, 1480, 1515
FalI	AAGNNNNNCTT	4 cut(s)	36, 68, 177, 209
FatI	CATG	7 cut(s)	512, 545, 721, 1192, 1464, 1476, 1511
Fnu4HI	GCNGC	9 cut(s)	132, 345, 408, 424, 711, 714, 740, 843, 1098
FokI	GGATG	4 cut(s)	488, 578, 1019, 1515
FriOI	GRGCYC	2 cut(s)	372, 524
Fsp4HI	GCNGC	9 cut(s)	132, 345, 408, 424, 711, 714, 740, 843, 1098
FspBI	CTAG	3 cut(s)	252, 627, 717
GluI	GCNGC	9 cut(s)	132, 345, 408, 424, 711, 714, 740, 843, 1098
GsuI	CTGGAG	1 cut(s)	259
HaeIII	GGCC	5 cut(s)	791, 806, 1100, 1311, 1634
HapII	CCGG	5 cut(s)	471, 731, 860, 1092, 1635
HgaI	GACGC	1 cut(s)	109
Hin1II	CATG	7 cut(s)	516, 549, 725, 1196, 1468, 1480, 1515
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	3 cut(s)	15, 50, 1483
HpaII	CCGG	5 cut(s)	471, 731, 860, 1092, 1635
HphI	GGTGA	2 cut(s)	182, 1484
Hpy166II	GTNNAC	3 cut(s)	271, 679, 1462
Hpy188III	TCNNGA	6 cut(s)	607, 701, 731, 913, 1429, 1661
Hpy8I	GTNNAC	3 cut(s)	271, 679, 1462
Hpy99I	CGWCG	2 cut(s)	66, 1064
HpyAV	CCTTC	5 cut(s)	19, 844, 892, 1597, 1658
HpyCH4III	ACNGT	8 cut(s)	336, 385, 883, 1144, 1237, 1280, 1459, 1648
HpyCH4IV	ACGT	4 cut(s)	222, 891, 999, 1188
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 851, 1037, 1097
HpyF3I	CTNAG	5 cut(s)	291, 434, 683, 695, 1258
HpySE526I	ACGT	4 cut(s)	222, 891, 999, 1188
Hsp92II	CATG	7 cut(s)	516, 549, 725, 1196, 1468, 1480, 1515
Kpn2I	TCCGGA	1 cut(s)	730
KpnI	GGTACC	1 cut(s)	1301
KroI	GCCGGC	1 cut(s)	1634
KroNI	GCCGGC	1 cut(s)	1636
Kzo9I	GATC	6 cut(s)	40, 361, 448, 502, 577, 1677
LguI	GCTCTTC	1 cut(s)	377
LmnI	GCTCC	1 cut(s)	1094
Lsp1109I	GCAGC	4 cut(s)	331, 725, 726, 829
LweI	GCATC	5 cut(s)	46, 556, 1145, 1156, 1675
MabI	ACCWGGT	1 cut(s)	1570
MaeI	CTAG	3 cut(s)	252, 627, 717
MaeII	ACGT	4 cut(s)	222, 891, 999, 1188
MaeIII	GTNAC	8 cut(s)	170, 218, 223, 385, 629, 698, 1082, 1579
MalI	GATC	6 cut(s)	42, 363, 450, 504, 579, 1679
MbiI	CCGCTC	1 cut(s)	1097
MboI	GATC	6 cut(s)	40, 361, 448, 502, 577, 1677
MboII	GAAGA	6 cut(s)	364, 512, 886, 907, 1401, 1453
MfeI	CAATTG	1 cut(s)	1672
MflI	RGATCY	3 cut(s)	502, 577, 1677
MhlI	GDGCHC	2 cut(s)	372, 524
MlsI	TGGCCA	2 cut(s)	806, 1311
MluNI	TGGCCA	2 cut(s)	806, 1311
MlyI	GAGTC	7 cut(s)	64, 90, 233, 445, 470, 706, 1172
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	8 cut(s)	112, 286, 556, 774, 1004, 1276, 1280, 1436
Mox20I	TGGCCA	2 cut(s)	806, 1311
Mph1103I	ATGCAT	1 cut(s)	1171
MroI	TCCGGA	1 cut(s)	730
MroNI	GCCGGC	1 cut(s)	1634
MroXI	GAANNNNTTC	1 cut(s)	970
MscI	TGGCCA	2 cut(s)	806, 1311
MseI	TTAA	5 cut(s)	285, 303, 507, 1416, 1596
MslI	CAYNNNNRTG	6 cut(s)	705, 800, 890, 1164, 1457, 1497
Msp20I	TGGCCA	2 cut(s)	806, 1311
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	5 cut(s)	471, 731, 860, 1092, 1635
MspR9I	CCNGG	5 cut(s)	236, 472, 1109, 1175, 1572
MunI	CAATTG	1 cut(s)	1672
Mva1269I	GAATGC	3 cut(s)	726, 1169, 1223
MvaI	CCWGG	4 cut(s)	236, 1109, 1175, 1572
MvnI	CGCG	1 cut(s)	1040
MwoI	GCNNNNNNNGC	4 cut(s)	72, 851, 1037, 1097
NaeI	GCCGGC	1 cut(s)	1636
NciI	CCSGG	1 cut(s)	472
NcoI	CCATGG	2 cut(s)	721, 1511
NdeII	GATC	6 cut(s)	40, 361, 448, 502, 577, 1677
NgoMIV	GCCGGC	1 cut(s)	1634
NheI	GCTAGC	1 cut(s)	716
NlaIII	CATG	7 cut(s)	516, 549, 725, 1196, 1468, 1480, 1515
NlaIV	GGNNCC	5 cut(s)	145, 481, 709, 1299, 1669
NmuCI	GTSAC	6 cut(s)	170, 218, 223, 385, 698, 1579
NsiI	ATGCAT	1 cut(s)	1171
NspI	RCATGY	1 cut(s)	1468
NspV	TTCGAA	1 cut(s)	659
OliI	CACNNNNGTG	2 cut(s)	705, 1457
PciSI	GCTCTTC	1 cut(s)	377
PctI	GAATGC	3 cut(s)	726, 1169, 1223
PdiI	GCCGGC	1 cut(s)	1636
PdmI	GAANNNNTTC	1 cut(s)	970
PfeI	GAWTC	4 cut(s)	35, 1056, 1365, 1489
PflMI	CCANNNNNTGG	2 cut(s)	1114, 1307
PfoI	TCCNGGA	1 cut(s)	1173
PkrI	GCNGC	9 cut(s)	133, 346, 409, 425, 712, 715, 741, 844, 1099
PleI	GAGTC	7 cut(s)	64, 89, 233, 444, 469, 705, 1172
PpsI	GAGTC	7 cut(s)	64, 89, 233, 444, 469, 705, 1172
Ppu21I	YACGTR	1 cut(s)	892
Psp124BI	GAGCTC	1 cut(s)	524
Psp1406I	AACGTT	1 cut(s)	999
Psp6I	CCWGG	4 cut(s)	234, 1107, 1173, 1570
PspGI	CCWGG	4 cut(s)	234, 1107, 1173, 1570
PspN4I	GGNNCC	5 cut(s)	145, 481, 709, 1299, 1669
PspPI	GGNCC	2 cut(s)	260, 1568
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	1532
PsuI	RGATCY	3 cut(s)	502, 577, 1677
RsaI	GTAC	6 cut(s)	190, 233, 382, 827, 1299, 1463
RsaNI	GTAC	6 cut(s)	189, 232, 381, 826, 1298, 1462
RseI	CAYNNNNRTG	6 cut(s)	705, 800, 890, 1164, 1457, 1497
SacI	GAGCTC	1 cut(s)	524
SapI	GCTCTTC	1 cut(s)	377
SaqAI	TTAA	5 cut(s)	285, 303, 507, 1416, 1596
SatI	GCNGC	9 cut(s)	132, 345, 408, 424, 711, 714, 740, 843, 1098
Sau3AI	GATC	6 cut(s)	40, 361, 448, 502, 577, 1677
Sau96I	GGNCC	2 cut(s)	260, 1568
SchI	GAGTC	7 cut(s)	64, 90, 233, 445, 470, 706, 1172
ScrFI	CCNGG	5 cut(s)	236, 472, 1109, 1175, 1572
SduI	GDGCHC	2 cut(s)	372, 524
SexAI	ACCWGGT	1 cut(s)	1570
SfaNI	GCATC	5 cut(s)	46, 556, 1145, 1156, 1675
SfcI	CTRYAG	1 cut(s)	525
SfuI	TTCGAA	1 cut(s)	659
SinI	GGWCC	2 cut(s)	260, 1568
SmiMI	CAYNNNNRTG	6 cut(s)	705, 800, 890, 1164, 1457, 1497
SmlI	CTYRAG	2 cut(s)	506, 605
SmoI	CTYRAG	2 cut(s)	506, 605
SpeI	ACTAGT	1 cut(s)	626
SspMI	CTAG	3 cut(s)	252, 627, 717
SstI	GAGCTC	1 cut(s)	524
StyD4I	CCNGG	5 cut(s)	234, 470, 1107, 1173, 1570
StyI	CCWWGG	5 cut(s)	444, 721, 1293, 1436, 1511
TaaI	ACNGT	8 cut(s)	336, 385, 883, 1144, 1237, 1280, 1459, 1648
TaiI	ACGT	4 cut(s)	225, 894, 1002, 1191
TaqI	TCGA	6 cut(s)	489, 659, 912, 922, 1127, 1344
TatI	WGTACW	2 cut(s)	825, 1461
TauI	GCSGC	5 cut(s)	134, 410, 426, 713, 1100
TfiI	GAWTC	4 cut(s)	35, 1056, 1365, 1489
Tru1I	TTAA	5 cut(s)	285, 303, 507, 1416, 1596
Tru9I	TTAA	5 cut(s)	285, 303, 507, 1416, 1596
TscAI	CASTG	4 cut(s)	37, 852, 1033, 1464
TseFI	GTSAC	6 cut(s)	170, 218, 223, 385, 698, 1579
TseI	GCWGC	4 cut(s)	344, 713, 739, 842
Tsp45I	GTSAC	6 cut(s)	170, 218, 223, 385, 698, 1579
TspDTI	ATGAA	3 cut(s)	1181, 1234, 1465
TspGWI	ACGGA	3 cut(s)	193, 391, 1245
TspRI	CASTG	4 cut(s)	37, 852, 1033, 1464
Van91I	CCANNNNNTGG	2 cut(s)	1114, 1307
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	260, 1568
XapI	RAATTY	3 cut(s)	354, 1561, 1640
XceI	RCATGY	1 cut(s)	1468
XcmI	CCANNNNNNNNNTGG	2 cut(s)	799, 1300
XmnI	GAANNNNTTC	1 cut(s)	970
XspI	CTAG	3 cut(s)	252, 627, 717
Zsp2I	ATGCAT	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.