Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032860.1

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Reverse (-)

237 .. 1245

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032860.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1009 bp

tccacacgatggcttcagggacaaggtattctacgtgtggttcgatgctcctattggatacatctccattactaagtgttatactcctgatcactgggagaagtggtggaagaatcctgaggatgtcgaattgtatcagtttatgggcaaggacaatgtgccatttcacacagtcgtgtttccttccgcgcttcttggaacaggagaaaattggacactcatgaagaacattagtgtcactgaatacttgaactatgaagaaggcaagttttccaagagtagaggcattggagtttttggaaacgatgcaaaaggaacgggcattccagttgaagtgtggcgttattacctgctgactaataggcctgaggtatcagacacattgttcacctgggccgatttacaagcaaaactcaaaagtgagttggtgggcaatttgggcaacttcatcaacagagttttgagtttcgttgccaaaccttcagccaaaggaggatacggtgacatcattcctgatgctccacatgcagactctgatgccttgacacttgaattagcagaaatagtcggtagatacgtcgagcaatacatagaagcaatggagaagctcaaactaaagcaagggctgaaaatagccatgagcatttctagcgaggggaatgcatatctccaagaatccaagttctggaagctctacaaggaggaccaacctcggtgctccattgtaattaaaacttcagtagggttagtgcatcttcttgcttgcttattggaaccttacatgccctcattttctgctagagtacttgagcagctaaacttgcctcctgagtcaatcaaatccctttgtgatgtcaataaagcaaaacggccttgggaaatcgtacctgatggtcacaagattggagaacccaagacattgttcacgacgttgaacggcgaagaagtcgaatctctgcggaaaaagttttctggaagccaagctgatagggaaaaacgtacacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

335

Amino Acids

38.03

Weight (kDa)

6.16

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AccB7I	CCANNNNNTGG	2 cut(s)	9, 685
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	187, 959
AcuI	CTGAAG	2 cut(s)	466, 721
AfaI	GTAC	3 cut(s)	805, 886, 1001
AfiI	CCNNNNNNNGG	2 cut(s)	9, 685
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	251, 333, 552, 935
AjnI	CCWGG	1 cut(s)	390
AjuI	GAANNNNNNNTTGG	2 cut(s)	906, 938
AleI	CACNNNNGTG	1 cut(s)	174
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	4 cut(s)	608, 692, 815, 984
AluI	AGCT	4 cut(s)	608, 692, 815, 984
Alw21I	GWGCWC	1 cut(s)	720
AlwNI	CAGNNNCTG	1 cut(s)	534
AoxI	GGCC	3 cut(s)	363, 394, 870
ApeKI	GCWGC	1 cut(s)	812
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	394, 704
AsuHPI	GGTGA	2 cut(s)	380, 513
AvaII	GGWCC	1 cut(s)	704
AxyI	CCTNAGG	2 cut(s)	118, 367
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	1 cut(s)	824
BccI	CCATC	2 cut(s)	3, 885
BceAI	ACGGC	2 cut(s)	885, 953
BcgI	CGANNNNNNTGC	2 cut(s)	642, 676
BciT130I	CCWGG	1 cut(s)	392
BciVI	GTATCC	2 cut(s)	51, 489
BclI	TGATCA	1 cut(s)	89
BfaI	CTAG	2 cut(s)	649, 799
BfuAI	ACCTGC	1 cut(s)	358
BfuI	GTATCC	2 cut(s)	51, 489
BisI	GCNGC	1 cut(s)	813
BlsI	GCNGC	1 cut(s)	814
BmcAI	AGTACT	1 cut(s)	805
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	704
BmgT120I	GGNCC	2 cut(s)	394, 704
BmiI	GGNNCC	1 cut(s)	775
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	5 cut(s)	35, 296, 506, 527, 761
BmuI	ACTGGG	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	828
BsaAI	YACGTR	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	391, 711, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	9, 685
Bse1I	ACTGG	2 cut(s)	99, 327
Bse21I	CCTNAGG	2 cut(s)	118, 367
Bse3DI	GCAATG	1 cut(s)	604
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	3 cut(s)	391, 711, 873
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	2 cut(s)	9, 685
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	3 cut(s)	109, 358, 820
BseNI	ACTGG	2 cut(s)	99, 327
BseXI	GCAGC	1 cut(s)	824
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	365, 396, 872
BsiHKAI	GWGCWC	1 cut(s)	720
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	9, 685
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	2 cut(s)	322, 665
BsnI	GGCC	3 cut(s)	365, 396, 872
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	2 cut(s)	187, 959
BspANI	GGCC	3 cut(s)	365, 396, 872
BspCNI	CTCAG	3 cut(s)	110, 359, 821
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	775
BspMI	ACCTGC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	604
BsrI	ACTGG	2 cut(s)	99, 327
BssECI	CCNNGG	3 cut(s)	391, 711, 873
BssMI	GATC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	873
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	173, 501
BstBAI	YACGTR	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	764
BstDEI	CTNAG	4 cut(s)	73, 118, 367, 829
BstF5I	GGATG	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	4 cut(s)	439, 525, 649, 821
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	2 cut(s)	528, 785
BstSCI	CCNGG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	824
Bsu36I	CCTNAGG	2 cut(s)	118, 367
BsuI	GTATCC	2 cut(s)	51, 489
BsuRI	GGCC	3 cut(s)	365, 396, 872
BtsCI	GGATG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	92, 238
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	764
CaiI	CAGNNNCTG	1 cut(s)	534
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	394, 704
Csp6I	GTAC	3 cut(s)	804, 885, 1000
CviAII	CATG	4 cut(s)	221, 525, 638, 782
CviQI	GTAC	3 cut(s)	804, 885, 1000
DdeI	CTNAG	4 cut(s)	73, 118, 367, 829
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	873
Eco147I	AGGCCT	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	704
Eco57I	CTGAAG	2 cut(s)	466, 721
Eco81I	CCTNAGG	2 cut(s)	118, 367
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	665
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	4 cut(s)	224, 528, 641, 785
FaiI	YATR	9 cut(s)	82, 144, 222, 256, 526, 591, 639, 665, 783
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	4 cut(s)	220, 524, 637, 781
FbaI	TGATCA	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	813
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	813
FspBI	CTAG	2 cut(s)	649, 799
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	813
HaeIII	GGCC	3 cut(s)	365, 396, 872
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	4 cut(s)	224, 528, 641, 785
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	5 cut(s)	113, 531, 675, 831, 951
HphI	GGTGA	2 cut(s)	380, 513
Hpy166II	GTNNAC	3 cut(s)	388, 925, 1002
Hpy188I	TCNGA	2 cut(s)	377, 536
Hpy188III	TCNNGA	8 cut(s)	87, 117, 221, 513, 686, 828, 926, 973
Hpy8I	GTNNAC	3 cut(s)	388, 925, 1002
Hpy99I	CGWCG	2 cut(s)	582, 932
HpyAV	CCTTC	3 cut(s)	193, 255, 490
HpyCH4III	ACNGT	2 cut(s)	173, 501
HpyCH4IV	ACGT	4 cut(s)	34, 577, 930, 998
HpyCH4V	TGCA	4 cut(s)	309, 528, 663, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	439, 525, 649, 821
HpyF3I	CTNAG	4 cut(s)	73, 118, 367, 829
HpySE526I	ACGT	4 cut(s)	34, 577, 930, 998
Hsp92II	CATG	4 cut(s)	224, 528, 641, 785
HspAI	GCGC	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	53, 524, 723
Lsp1109I	GCAGC	1 cut(s)	824
LweI	GCATC	5 cut(s)	35, 296, 506, 527, 761
MaeI	CTAG	2 cut(s)	649, 799
MaeII	ACGT	4 cut(s)	34, 577, 930, 998
MaeIII	GTNAC	3 cut(s)	236, 501, 894
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	5 cut(s)	122, 236, 270, 747, 954
MhlI	GDGCHC	1 cut(s)	720
MluCI	AATT	5 cut(s)	129, 209, 434, 552, 727
MlyI	GAGTC	2 cut(s)	525, 840
MnlI	CCTC	9 cut(s)	113, 276, 362, 486, 647, 695, 721, 797, 835
Mph1103I	ATGCAT	1 cut(s)	665
MseI	TTAA	1 cut(s)	730
MslI	CAYNNNNRTG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	2 cut(s)	322, 665
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	439, 525, 649, 821
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	4 cut(s)	224, 528, 641, 785
NlaIV	GGNNCC	1 cut(s)	775
NmuCI	GTSAC	3 cut(s)	236, 501, 894
NsiI	ATGCAT	1 cut(s)	665
NspI	RCATGY	2 cut(s)	528, 785
OliI	CACNNNNGTG	1 cut(s)	174
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	2 cut(s)	40, 574
PctI	GAATGC	2 cut(s)	322, 665
PfeI	GAWTC	3 cut(s)	113, 675, 951
PflMI	CCANNNNNTGG	2 cut(s)	9, 685
PkrI	GCNGC	1 cut(s)	814
PleI	GAGTC	2 cut(s)	525, 839
PpsI	GAGTC	2 cut(s)	525, 839
Ppu21I	YACGTR	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	775
PspPI	GGNCC	2 cut(s)	394, 704
PstNI	CAGNNNCTG	1 cut(s)	534
RsaI	GTAC	3 cut(s)	805, 886, 1001
RsaNI	GTAC	3 cut(s)	804, 885, 1000
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	730
SatI	GCNGC	1 cut(s)	813
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	2 cut(s)	394, 704
ScaI	AGTACT	1 cut(s)	805
SchI	GAGTC	2 cut(s)	525, 840
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	5 cut(s)	35, 296, 506, 527, 761
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	807
SmoI	CTYRAG	1 cut(s)	807
Sse9I	AATT	5 cut(s)	129, 209, 434, 552, 727
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	187, 959
SspMI	CTAG	2 cut(s)	649, 799
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	2 cut(s)	173, 501
TaiI	ACGT	4 cut(s)	37, 580, 933, 1001
TaqI	TCGA	4 cut(s)	43, 127, 580, 949
TasI	AATT	5 cut(s)	129, 209, 434, 552, 727
TatI	WGTACW	1 cut(s)	803
TfiI	GAWTC	3 cut(s)	113, 675, 951
Tru1I	TTAA	1 cut(s)	730
Tru9I	TTAA	1 cut(s)	730
TscAI	CASTG	2 cut(s)	99, 245
TseFI	GTSAC	3 cut(s)	236, 501, 894
TseI	GCWGC	1 cut(s)	812
Tsp45I	GTSAC	3 cut(s)	236, 501, 894
TspDTI	ATGAA	3 cut(s)	237, 271, 437
TspRI	CASTG	2 cut(s)	99, 245
Van91I	CCANNNNNTGG	2 cut(s)	9, 685
VpaK11BI	GGWCC	1 cut(s)	704
XceI	RCATGY	2 cut(s)	528, 785
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XspI	CTAG	2 cut(s)	649, 799
ZrmI	AGTACT	1 cut(s)	805
Zsp2I	ATGCAT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.