Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Forward (+)

38779174 .. 38786529

Gene Structure 7356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38474

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2397 bp

ATGGGAGACCTTGCCGTTACTTCCAAGGAGGGCCCCAAGCTCCCCATCCCCGGCCAACGCAACGTCCTCATCACCAGCGCATTGCCGTATGTCAACAACGTCCCTCATCTCGGCAACATCATCGGCTGTGTTCTCAGCGCCGATGTCTTCGCTCGCTACTGCCGTCTCCGGGGATACAACACTGTCTATATCTGCGGCACCGATGAGTACGGCACCGCCACCGAGACCAAAGCCCTGGAGGAGAAGTGTAGCCCCAAGGAGATCTGCGATAAGTATCATGCGATTCATAGGCAGGTGTACGAGTGGTTCAATATAAGTTTTGACAAATTCGGGCGAACTTCGATGCCGGAGCAGACGGAGGTGTGCCAAGCGATTTTCAATAGGCTGCTGGAGAATAATTGGCTTTCTGAGAACACAATGCAGCAGCTATATTGTGATACTTGCACACGGTTTTTAGCCGACAGGCTTGTGGAGGGGACGTGCCCAACTCAAGGTTGTGATTATACTTCTGCAAGAGGAGATCAGTGTGAGAACTGTGGGAAGCTTTTAAACCCCACAGAATTAAAGGATCCGAAGTGCAAGGTCTGTAAGTCGACTCCACGGATTCGTGATACAAACCATTTGTTTCTGGAACTGCCTTTGCTGAAGGATAGGTTGGAAGAGTATATTAATAAAATGTCAGTGGAGGGGTCTTGGAGCCAGAATGCCATTCAAGCAACAAATGCGTGGCTCAGAGAGGGGCTTAAACAACGGTGTATCACTAGGGATCTGAAGTGGGGGGTTCCAGTTCCACATGATAACTTCAGGGACAAGGTTTTCTATGTGTGGTTTGATGCGCCTATTGGATATGTTTCAATTACTAAATGCTACACTCCAGATTGGGAGAAATGGTGGAAGAATCCAGAGGATGTGGAGTTGTATCAGTTTATGGGCAAAGATAATGTGCCATTCCACACGGTGATGTTTCCTTCCACGCTTCTTGGAACTGGTGAAAATTGGACCTTAATGAAGACAATTAGTGTTACTGAATACTTGAACTATGAAGCAGGAAAGTTTTCCAAGAGTAAAGGGATTGGAGTATTTGGAAACGATGCCAGAGATACAAACATTCCTGTTGAAGTATGGCGATATTACTTGCTGACCAATAGGCCCGAGGTGTCAGATACATTATTTACATGGGCGGATTTGCAAGCGAAGCTCAACAGTGAATTGCTGAATAATTTGGGCAACTTCATTAACCGAGTTTTGAGTTTTGTTGCCAAACCTTCAGGTCAAGGATATGACTCCATTATTCCAGATGCTCAAGATGCCATCTCTGATCCTTTGACAGAGAAAATAGCTGAAAAAGTGGGTAAATGTGTGGAGCAATATGTGGAGGCCATGGAGAAGGTAAAACTAAAGCAAGGACTCAAACTAGCAATGAGCATTTCAAGTGAAGGGAATGCATATCTGCAAGAAAGTCAGTTCTGGAAGCTTTACAAGGAAGATCAACCTCGCTGCTCCATTGTTATGAGAACTGCAGTGGGGCTAGTGCATCTTCTTGCTTGCTTATTAGAACCCTTCATGCCATCTTTTTCTGTTGAGGTATTTAAGCAGCTTAATTTGTCTCCTGAGACGCATATATCACTTTGTGATGATAAAGGCGATACTGATAGGGCAAGACGGCCATGGGAGATTGTACCTAGAGGTCACAAGATTGGGAAACCAGAGCCGTTGTTCAAGGAATTGAATGATGATGAAGTAGATTCTCTAAGGAAGAGGTTTGCTGGAAGTCAGGCGGATAGAAAGGAAAGGGAAGAAGCTGAAGCAGTGAAGTTGGCTGAGCAGCTCAAGAAATCAAAAGTTTCAGACAAGAGTGGAAAGAAGAAACAACAAGCCACAAAATCTGCAACTGAAGCAGAGATTTCCATATCTAGACTAGATATTCGTGTCGGCCTCATTACAAAAGCTCAGAAGCATCCTGATGCTGATGCACTTTATGTGGAAGAGATTGATGTCGGCGAAGGACAGCCTAGAACAGTTGTTAGTGGACTAGTCAGGTTTATACCTCTTGAAGAAATGCAGAATCGGAAGGTATGCGTCCTTTGCAACCTGAAGCCAGCGACCATGCGGGGTATTAAATCACAAGCGATGGTTCTTGCTGCTTCAAATAGTGACCACACCACGGTTGAGTTGGTTGATCCACCAAAATCTGCTCAAGTTGGGGAGAGAATTACATTTCCGGGGTTCCAAGGTGAGCCTGATGATGTGTTGAACCCCAAGAAGAAGGTTTGGGAAACCCTACAGGTAGATTTGCACAGTAACCCTGAGCTAGTCGCATGCTACAAAGATATTCCCCTCACTACATCAGCAGGTGTTTGCACTGTTAAATCTATTCGAGGTGGGTCAATTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

798

Amino Acids

90.13

Weight (kDa)

6.39

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	22 - 416	9.9e-155	tRNA synthetases class I (M)
tRNA-synt_1	PF00133	24 - 265	1.1e-08	tRNA synthetases class I (I, L, M and V)
Anticodon_3	PF19303	443 - 592	3.9e-20	Anticodon binding domain of methionyl tRNA ligase
tRNA_bind	PF01588	642 - 737	9.6e-33	Putative tRNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	283, 2342
Acc36I	ACCTGC	2 cut(s)	283, 2342
AccB1I	GGYRCC	2 cut(s)	197, 212
AccI	GTMKAC	1 cut(s)	593
AciI	CCGC	5 cut(s)	195, 216, 1181, 1778, 2110
AclWI	GGATC	5 cut(s)	563, 576, 774, 1313, 2174
AcoI	YGGCCR	2 cut(s)	52, 1664
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	7 cut(s)	665, 787, 791, 1251, 1824, 1914, 2114
AdeI	CACNNNGTG	2 cut(s)	958, 1631
AfaI	GTAC	3 cut(s)	209, 299, 1680
AfiI	CCNNNNNNNGG	5 cut(s)	50, 110, 169, 491, 2164
AhlI	ACTAGT	1 cut(s)	2032
AjiI	CACGTC	1 cut(s)	480
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
Alw26I	GTCTC	4 cut(s)	170, 218, 1607, 1611
AlwI	GGATC	5 cut(s)	563, 576, 774, 1313, 2174
Ama87I	CYCGRG	1 cut(s)	1151
AoxI	GGCC	6 cut(s)	31, 52, 1148, 1377, 1664, 1933
ApaI	GGGCCC	1 cut(s)	35
ApeKI	GCWGC	7 cut(s)	385, 421, 424, 1497, 1594, 1825, 2141
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	1908, 1940
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	1054
AspLEI	GCGC	3 cut(s)	80, 140, 838
AspS9I	GGNCC	4 cut(s)	31, 32, 999, 1149
AsuC2I	CCSGG	3 cut(s)	51, 170, 2223
AsuHPI	GGTGA	4 cut(s)	64, 970, 1001, 2246
AvaI	CYCGRG	1 cut(s)	1151
AvaII	GGWCC	1 cut(s)	999
BaeGI	GKGCMC	2 cut(s)	35, 485
BamHI	GGATCC	1 cut(s)	568
BanI	GGYRCC	2 cut(s)	197, 212
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	139, 1016
BbvI	GCAGC	7 cut(s)	372, 433, 436, 1484, 1606, 1837, 2128
BccI	CCATC	4 cut(s)	53, 1319, 1576, 2125
BceAI	ACGGC	5 cut(s)	70, 147, 226, 1679, 1696
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	167
BcnI	CCSGG	3 cut(s)	51, 170, 2223
BcoDI	GTCTC	4 cut(s)	170, 218, 1607, 1611
BcuI	ACTAGT	1 cut(s)	2032
BfaI	CTAG	9 cut(s)	762, 1415, 1529, 1683, 1914, 1919, 2013, 2033, 2312
BfmI	CTRYAG	2 cut(s)	1518, 2282
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	2 cut(s)	283, 2342
BfuI	GTATCC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	8 cut(s)	196, 386, 422, 425, 1498, 1595, 1826, 2142
BlpI	GCTNAGC	1 cut(s)	1821
BlsI	GCNGC	8 cut(s)	197, 387, 423, 426, 1499, 1596, 1827, 2143
Bme1390I	CCNGG	4 cut(s)	51, 170, 236, 2223
Bme18I	GGWCC	1 cut(s)	999
BmeT110I	CYCGRG	1 cut(s)	1151
BmgBI	CACGTC	1 cut(s)	480
BmgT120I	GGNCC	4 cut(s)	31, 32, 999, 1149
BmiI	GGNNCC	8 cut(s)	33, 34, 199, 214, 570, 698, 783, 2228
BmrFI	CCNGG	4 cut(s)	51, 170, 236, 2223
BmsI	GCATC	9 cut(s)	333, 823, 1081, 1288, 1297, 1543, 1954, 1960, 1966
BpiI	GAAGAC	2 cut(s)	139, 1016
BpmI	CTGGAG	3 cut(s)	257, 410, 858
Bpu10I	CCTNAGC	1 cut(s)	2307
Bpu1102I	GCTNAGC	1 cut(s)	1821
BpuEI	CTTGAG	4 cut(s)	474, 1287, 1814, 2181
BpuMI	CCSGG	3 cut(s)	51, 170, 2223
BsaBI	GATNNNNATC	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	218
BsaXI	ACNNNNNCTCC	6 cut(s)	230, 260, 464, 494, 875, 905
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 110, 169, 491, 2164
Bse1I	ACTGG	2 cut(s)	785, 991
Bse3DI	GCAATG	2 cut(s)	80, 1425
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	236
BseGI	GGATG	3 cut(s)	45, 913, 1957
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	5 cut(s)	50, 110, 169, 491, 2164
BseMI	GCAATG	2 cut(s)	80, 1425
BseMII	CTCAG	7 cut(s)	148, 399, 745, 1602, 1812, 1964, 2298
BseNI	ACTGG	2 cut(s)	785, 991
BseRI	GAGGAG	2 cut(s)	254, 531
BseSI	GKGCMC	2 cut(s)	35, 485
BseXI	GCAGC	7 cut(s)	372, 433, 436, 1484, 1606, 1837, 2128
BshFI	GGCC	6 cut(s)	33, 54, 1150, 1379, 1666, 1935
BshNI	GGYRCC	2 cut(s)	197, 212
BsiHKCI	CYCGRG	1 cut(s)	1151
BsiSI	CCGG	4 cut(s)	51, 169, 347, 2222
BslFI	GGGAC	3 cut(s)	86, 490, 821
BslI	CCNNNNNNNGG	5 cut(s)	50, 110, 169, 491, 2164
BsmAI	GTCTC	4 cut(s)	170, 218, 1607, 1611
BsmBI	CGTCTC	2 cut(s)	170, 1607
BsmFI	GGGAC	3 cut(s)	86, 490, 821
BsmI	GAATGC	2 cut(s)	709, 1447
BsnI	GGCC	6 cut(s)	33, 54, 1150, 1379, 1666, 1935
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	1151
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	35, 485
Bsp143I	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2179
Bsp1720I	GCTNAGC	1 cut(s)	1821
Bsp19I	CCATGG	2 cut(s)	1380, 1667
BspACI	CCGC	5 cut(s)	195, 216, 1181, 1778, 2110
BspANI	GGCC	6 cut(s)	33, 54, 1150, 1379, 1666, 1935
BspCNI	CTCAG	7 cut(s)	147, 400, 744, 1603, 1813, 1963, 2299
BspLI	GGNNCC	8 cut(s)	33, 34, 199, 214, 570, 698, 783, 2228
BspMAI	CTGCAG	1 cut(s)	1522
BspMI	ACCTGC	2 cut(s)	283, 2342
BspPI	GGATC	5 cut(s)	563, 576, 774, 1313, 2174
BspT107I	GGYRCC	2 cut(s)	197, 212
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	80, 1425
BsrI	ACTGG	2 cut(s)	785, 991
BssMI	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2179
BssT1I	CCWWGG	5 cut(s)	24, 255, 1380, 1667, 2230
Bst2UI	CCWGG	1 cut(s)	236
Bst6I	CTCTTC	3 cut(s)	654, 1751, 1980
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	5 cut(s)	154, 1191, 1546, 2100, 2320
BstDEI	CTNAG	8 cut(s)	134, 408, 731, 1611, 1751, 1821, 1950, 2307
BstDSI	CCRYGG	4 cut(s)	599, 1380, 1667, 2163
BstF5I	GGATG	3 cut(s)	45, 913, 1957
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	80, 140, 838
BstKTI	GATC	7 cut(s)	264, 523, 571, 769, 1321, 1489, 2182
BstMAI	GTCTC	4 cut(s)	170, 218, 1607, 1611
BstMBI	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2179
BstMWI	GCNNNNNNNGC	6 cut(s)	713, 722, 1195, 1307, 1895, 2085
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	2322
BstSCI	CCNGG	4 cut(s)	49, 168, 234, 2221
BstSFI	CTRYAG	2 cut(s)	1518, 2282
BstSLI	GKGCMC	2 cut(s)	35, 485
BstV1I	GCAGC	7 cut(s)	372, 433, 436, 1484, 1606, 1837, 2128
BstV2I	GAAGAC	2 cut(s)	139, 1016
BstX2I	RGATCY	3 cut(s)	261, 568, 766
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	3 cut(s)	261, 568, 766
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	6 cut(s)	33, 54, 1150, 1379, 1666, 1935
BtgI	CCRYGG	4 cut(s)	599, 1380, 1667, 2163
BtgZI	GCGATG	1 cut(s)	2144
BtrI	CACGTC	1 cut(s)	480
BtsCI	GGATG	3 cut(s)	45, 913, 1957
BtsI	GCAGTG	2 cut(s)	1527, 1815
BtsIMutI	CAGTG	7 cut(s)	180, 530, 687, 1210, 1527, 1815, 2361
BveI	ACCTGC	2 cut(s)	283, 2342
Cac8I	GCNNGC	5 cut(s)	154, 1191, 1546, 2100, 2320
CfoI	GCGC	3 cut(s)	80, 140, 838
Cfr13I	GGNCC	4 cut(s)	31, 32, 999, 1149
CseI	GACGC	2 cut(s)	1624, 2068
Csp6I	GTAC	3 cut(s)	208, 298, 1679
CspCI	CAANNNNNGTGG	2 cut(s)	961, 996
CviAII	CATG	8 cut(s)	278, 794, 1176, 1381, 1564, 1668, 2107, 2319
CviQI	GTAC	3 cut(s)	208, 298, 1679
DdeI	CTNAG	8 cut(s)	134, 408, 731, 1611, 1751, 1821, 1950, 2307
DpnI	GATC	7 cut(s)	263, 522, 570, 768, 1320, 1488, 2181
DpnII	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2179
DraI	TTTAAA	1 cut(s)	549
DraIII	CACNNNGTG	2 cut(s)	958, 1631
EaeI	YGGCCR	2 cut(s)	52, 1664
Eam1104I	CTCTTC	3 cut(s)	654, 1751, 1980
EarI	CTCTTC	3 cut(s)	654, 1751, 1980
EciI	GGCGGA	2 cut(s)	1196, 1793
Eco130I	CCWWGG	5 cut(s)	24, 255, 1380, 1667, 2230
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	999
Eco57I	CTGAAG	7 cut(s)	665, 787, 791, 1251, 1824, 1914, 2114
Eco88I	CYCGRG	1 cut(s)	1151
EcoO109I	RGGNCCY	2 cut(s)	31, 32
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	5 cut(s)	24, 255, 1380, 1667, 2230
EcoT22I	ATGCAT	1 cut(s)	1447
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	5 cut(s)	24, 255, 1380, 1667, 2230
Esp3I	CGTCTC	2 cut(s)	170, 1607
FaeI	CATG	8 cut(s)	281, 797, 1179, 1384, 1567, 1671, 2110, 2322
FaqI	GGGAC	3 cut(s)	86, 490, 821
FatI	CATG	8 cut(s)	277, 793, 1175, 1380, 1563, 1667, 2106, 2318
FauI	CCCGC	1 cut(s)	2103
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	8 cut(s)	196, 386, 422, 425, 1498, 1595, 1826, 2142
FokI	GGATG	3 cut(s)	32, 920, 1944
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	8 cut(s)	196, 386, 422, 425, 1498, 1595, 1826, 2142
FspBI	CTAG	9 cut(s)	762, 1415, 1529, 1683, 1914, 1919, 2013, 2033, 2312
GlaI	GCGC	3 cut(s)	79, 139, 837
GluI	GCNGC	8 cut(s)	196, 386, 422, 425, 1498, 1595, 1826, 2142
GsuI	CTGGAG	3 cut(s)	257, 410, 858
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	6 cut(s)	33, 54, 1150, 1379, 1666, 1935
HapII	CCGG	4 cut(s)	51, 169, 347, 2222
HgaI	GACGC	2 cut(s)	1624, 2068
HhaI	GCGC	3 cut(s)	80, 140, 838
Hin1II	CATG	8 cut(s)	281, 797, 1179, 1384, 1567, 1671, 2110, 2322
Hin6I	GCGC	3 cut(s)	78, 138, 836
HinP1I	GCGC	3 cut(s)	78, 138, 836
HincII	GTYRAC	2 cut(s)	94, 594
HindII	GTYRAC	2 cut(s)	94, 594
HindIII	AAGCTT	2 cut(s)	542, 1472
HinfI	GANTC	8 cut(s)	283, 595, 604, 898, 1283, 1407, 1745, 2065
HpaII	CCGG	4 cut(s)	51, 169, 347, 2222
HphI	GGTGA	4 cut(s)	64, 970, 1001, 2246
Hpy166II	GTNNAC	4 cut(s)	94, 298, 594, 2030
Hpy188I	TCNGA	9 cut(s)	409, 573, 734, 771, 1162, 1318, 1849, 1953, 2070
Hpy8I	GTNNAC	4 cut(s)	94, 298, 594, 2030
HpyAV	CCTTC	9 cut(s)	640, 978, 1275, 1381, 1430, 1570, 1997, 2065, 2260
HpyCH4IV	ACGT	3 cut(s)	63, 99, 479
HpyF10VI	GCNNNNNNNGC	6 cut(s)	713, 722, 1195, 1307, 1895, 2085
HpyF3I	CTNAG	8 cut(s)	134, 408, 731, 1611, 1751, 1821, 1950, 2307
HpySE526I	ACGT	3 cut(s)	63, 99, 479
Hsp92II	CATG	8 cut(s)	281, 797, 1179, 1384, 1567, 1671, 2110, 2322
HspAI	GCGC	3 cut(s)	78, 138, 836
Kzo9I	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2179
LmnI	GCTCC	5 cut(s)	45, 349, 696, 1363, 1505
Lsp1109I	GCAGC	7 cut(s)	372, 433, 436, 1484, 1606, 1837, 2128
LweI	GCATC	9 cut(s)	333, 823, 1081, 1288, 1297, 1543, 1954, 1960, 1966
MaeI	CTAG	9 cut(s)	762, 1415, 1529, 1683, 1914, 1919, 2013, 2033, 2312
MaeII	ACGT	3 cut(s)	63, 99, 479
MaeIII	GTNAC	5 cut(s)	16, 1021, 1688, 2153, 2300
MalI	GATC	7 cut(s)	263, 522, 570, 768, 1320, 1488, 2181
MboI	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2179
MflI	RGATCY	3 cut(s)	261, 568, 766
MhlI	GDGCHC	2 cut(s)	35, 485
MlyI	GAGTC	3 cut(s)	589, 1277, 1401
MmeI	TCCRAC	1 cut(s)	636
Mph1103I	ATGCAT	1 cut(s)	1447
MroXI	GAANNNNTTC	1 cut(s)	1054
MslI	CAYNNNNRTG	3 cut(s)	959, 1508, 1962
MspI	CCGG	4 cut(s)	51, 169, 347, 2222
MspR9I	CCNGG	4 cut(s)	51, 170, 236, 2223
Mva1269I	GAATGC	2 cut(s)	709, 1447
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	6 cut(s)	713, 722, 1195, 1307, 1895, 2085
NciI	CCSGG	3 cut(s)	51, 170, 2223
NcoI	CCATGG	2 cut(s)	1380, 1667
NdeII	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2179
NlaIII	CATG	8 cut(s)	281, 797, 1179, 1384, 1567, 1671, 2110, 2322
NlaIV	GGNNCC	8 cut(s)	33, 34, 199, 214, 570, 698, 783, 2228
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	1688, 2153
NsiI	ATGCAT	1 cut(s)	1447
NspI	RCATGY	1 cut(s)	2322
PaeI	GCATGC	1 cut(s)	2322
PaqCI	CACCTGC	2 cut(s)	283, 2342
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PctI	GAATGC	2 cut(s)	709, 1447
PdmI	GAANNNNTTC	1 cut(s)	1054
PfeI	GAWTC	5 cut(s)	283, 604, 898, 1745, 2065
PkrI	GCNGC	8 cut(s)	197, 387, 423, 426, 1499, 1596, 1827, 2143
PleI	GAGTC	3 cut(s)	589, 1277, 1401
PpsI	GAGTC	3 cut(s)	589, 1277, 1401
PshBI	ATTAAT	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	8 cut(s)	33, 34, 199, 214, 570, 698, 783, 2228
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	4 cut(s)	31, 32, 999, 1149
PsrI	GAACNNNNNNTAC	2 cut(s)	290, 322
PstI	CTGCAG	1 cut(s)	1522
PsuI	RGATCY	3 cut(s)	261, 568, 766
RsaI	GTAC	3 cut(s)	209, 299, 1680
RsaNI	GTAC	3 cut(s)	208, 298, 1679
RseI	CAYNNNNRTG	3 cut(s)	959, 1508, 1962
SalI	GTCGAC	1 cut(s)	592
SatI	GCNGC	8 cut(s)	196, 386, 422, 425, 1498, 1595, 1826, 2142
Sau3AI	GATC	7 cut(s)	261, 520, 568, 766, 1318, 1486, 2179
Sau96I	GGNCC	4 cut(s)	31, 32, 999, 1149
SchI	GAGTC	3 cut(s)	589, 1277, 1401
ScrFI	CCNGG	4 cut(s)	51, 170, 236, 2223
SduI	GDGCHC	2 cut(s)	35, 485
SfaNI	GCATC	9 cut(s)	333, 823, 1081, 1288, 1297, 1543, 1954, 1960, 1966
SfcI	CTRYAG	2 cut(s)	1518, 2282
SinI	GGWCC	1 cut(s)	999
SmiMI	CAYNNNNRTG	3 cut(s)	959, 1508, 1962
SmlI	CTYRAG	4 cut(s)	489, 1302, 1829, 2196
SmoI	CTYRAG	4 cut(s)	489, 1302, 1829, 2196
SpeI	ACTAGT	1 cut(s)	2032
SphI	GCATGC	1 cut(s)	2322
SsiI	CCGC	5 cut(s)	195, 216, 1181, 1778, 2110
SspMI	CTAG	9 cut(s)	762, 1415, 1529, 1683, 1914, 1919, 2013, 2033, 2312
StyD4I	CCNGG	4 cut(s)	49, 168, 234, 2221
StyI	CCWWGG	5 cut(s)	24, 255, 1380, 1667, 2230
TaiI	ACGT	3 cut(s)	66, 102, 482
TaqI	TCGA	3 cut(s)	341, 593, 2377
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	5 cut(s)	283, 604, 898, 1745, 2065
TscAI	CASTG	7 cut(s)	187, 530, 687, 1210, 1527, 1815, 2368
TseFI	GTSAC	2 cut(s)	1688, 2153
TseI	GCWGC	7 cut(s)	385, 421, 424, 1497, 1594, 1825, 2141
Tsp45I	GTSAC	2 cut(s)	1688, 2153
TspDTI	ATGAA	6 cut(s)	275, 1022, 1056, 1222, 1552, 1752
TspGWI	ACGGA	2 cut(s)	371, 616
TspRI	CASTG	7 cut(s)	187, 530, 687, 1210, 1527, 1815, 2368
VpaK11BI	GGWCC	1 cut(s)	999
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	1 cut(s)	326
XbaI	TCTAGA	1 cut(s)	1913
XceI	RCATGY	1 cut(s)	2322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2170
XmiI	GTMKAC	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	1054
XspI	CTAG	9 cut(s)	762, 1415, 1529, 1683, 1914, 1919, 2013, 2033, 2312
Zsp2I	ATGCAT	1 cut(s)	1447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.