Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001029

Physical Location & Seq

Genomic Coordinates Reverse (-)

1073264 .. 1073681

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAGAAGCTCAAACTAAAGCAAGGGATAAAAATTGCTATGAGCATTTATAGCAAGGGGAATGCATATCTCCAAGAATCCAAATTCTGGAAGCTCTACAAGGAGGACCGGCCTCCGTGCTCCATTGTCATCAAAACATCAGTAGGGCTAGTAGCAAAACGGCTTTGGGAGATTGTACCTGATGGTCACAAGATTGGGGAACCTGAGACATTGTTCACGATGTTGAAAGACGAAGAAGTCGAATCTCAAAGGAAGAAATGTGCTGGAAGCCAAGCTGACAGGAAAAAAACATACCCAATAAGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

103

Amino Acids

11.74

Weight (kDa)

9.46

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13780
fragaria_vesca	FvH4_4g13560 FvH4_4g13560 FvH4_4g13560 FvH4_4g36101 FvH4_4g36103
malus_domestica	MD04G1013400.v1.1 MD05G1172700.v1.1 MD10G1161000.v1.1
prunus_persica	Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.1G159500_v2.0.a1 Prupe.2G130000_v2.0.a1 Prupe.2G130800_v2.0.a1 Prupe.8G200100_v2.0.a1 Prupe.8G200100_v2.0.a1
pyrus_communis	pycom04g01040 pycom05g15930 pycom10g13910
rosa_chinensis	RchiOBHm_Chr1g0332221 RchiOBHm_Chr2g0166871 RchiOBHm_Chr4g0414311 RchiOBHm_Chr4g0442441
rosa_laevigata	RLG00000005711 RLG00000008159 RLG00000021676
rosa_multiflora	Rmu_co8251943.1_g000001 Rmu_co8341625.1_g000001 Rmu_sc0000733.1_g000008 Rmu_sc0001063.1_g000003 Rmu_sc0002735.1_g000014 Rmu_sc0005196.1_g000006 Rmu_sc0005344.1_g000007 Rmu_sc0032860.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084040 Rroxscaffold_2G00084460 Rroxscaffold_4G00318360 Rroxscaffold_5G00358180
rosa_rugosa	Rorug01G0098500 Rorug01G0098600 Rorug01G0098700 Rorug01G0098800 Rorug01G0098900 Rorug02G0526100 Rorug04G0126800
rosa_samantha	Rh1AG122600 Rh1BG093900 Rh1CG117200 Rh1DG128200 Rh2AG593100 Rh2BG604400 Rh2CG575300 Rh2DG616000 Rh4AG184800 Rh4BG184300 Rh4CG197700 Rh4DG181400 Rh4DG182000
rosa_wichuraiana	Rw1G010000 Rw2G049370 Rw4G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	83
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	4 cut(s)	10, 94, 275, 303
AluI	AGCT	4 cut(s)	10, 94, 275, 303
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	200
AoxI	GGCC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	122
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	176
CviJI	RGCY	8 cut(s)	10, 94, 112, 148, 163, 270, 275, 303
CviKI_1	RGCY	8 cut(s)	10, 94, 112, 148, 163, 270, 275, 303
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	204
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	106
EcoT22I	ATGCAT	1 cut(s)	67
FaiI	YATR	4 cut(s)	41, 51, 67, 292
FspBI	CTAG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	2 cut(s)	77, 242
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188III	TCNNGA	2 cut(s)	88, 217
Hpy8I	GTNNAC	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	6 cut(s)	73, 122, 192, 216, 249, 265
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	185
MboII	GAAGA	2 cut(s)	245, 265
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	2 cut(s)	33, 83
MnlI	CCTC	2 cut(s)	97, 123
Mph1103I	ATGCAT	1 cut(s)	67
MspI	CCGG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	51
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	77, 242
PflMI	CCANNNNNTGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
Sau96I	GGNCC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	6 cut(s)	12, 96, 181, 205, 277, 305
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	2 cut(s)	33, 83
SspMI	CTAG	1 cut(s)	149
TaqI	TCGA	1 cut(s)	240
TasI	AATT	2 cut(s)	33, 83
TfiI	GAWTC	2 cut(s)	77, 242
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	105
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	83
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.