Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009266

Physical Location & Seq

Genomic Coordinates Reverse (-)

10567239 .. 10571063

Gene Structure 3825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1086100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCTCTCAACAGTGACAAAGCACACAAAAATGTCGACTACCTCTCGCTCGCTGTACCGTTCACTGCGCCTGCGGTCCTTTTCCACAAGCACGAAGCCGACACATCACAACAGCCACCAGCAGAACCACCAGTACACGGAACCCAATTCCTTCATTGGGTGCTGGGAGGCCCCCAAGGACCCCAAGGAGGCTGAGGCCAAGCTTGCGCAGCTCCGCCGAGACTACGCCAAGCAGGTCAAGGAGGTCCGCAAGGAGTATATCAAGGAGGTCGAGGTCATGAGGCTCGAGAAACTTCGCAAGGACGAGGCTTGTAAAGAAGCCCTTAGGCTCCAGAACGAGGAGCGCAAGAGGCTCAAGGCAGAGGCTGCAAAGGTCCGCGCCCAGCAGCGTGAGGTTGCCGAGCAGGAGTTCCGGCAAACGCTGTTGAAAGAAAGAGCAGAGAAGCTTGAGAATTGGAAGATGAAGGAAAAACAGAAAGAAGAGATGAAAAAAGATGAGAAAGAACTGCTGCGACGTAAGAGTTCCATGTGGATCGATGAACAAGAACTGGAAAAGAAGATTTTAGAAGCCATCGTCGATACCACACCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

23.6

Weight (kDa)

9.55

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49210 AT5G49210 AT5G49210
fragaria_vesca	FvH4_4g13570 FvH4_4g13570
malus_domestica	MD12G1086100.v1.1 MD14G1080700.v1.1
prunus_persica	Prupe.1G159300_v2.0.a1 Prupe.1G159300_v2.0.a1
pyrus_communis	pycom12g07310 pycom14g07000
rosa_chinensis	RchiOBHm_Chr4g0414321
rosa_laevigata	RLG00000008158
rosa_multiflora	Rmu_sc0005196.1_g000008 Rmu_sc0041188.1_g000002
rosa_roxburghii	Rroxscaffold_5G00358190
rosa_rugosa	Rorug04G0126800
rosa_samantha	Rh4AG184900 Rh4BG184500 Rh4CG197800 Rh4DG182100
rosa_wichuraiana	Rw4G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	35
AccII	CGCG	1 cut(s)	378
AciI	CCGC	4 cut(s)	73, 214, 247, 376
AclWI	GGATC	1 cut(s)	539
AfaI	GTAC	2 cut(s)	56, 134
AfiI	CCNNNNNNNGG	4 cut(s)	136, 156, 187, 337
AgsI	TTSAA	1 cut(s)	427
AluBI	AGCT	3 cut(s)	202, 211, 445
AluI	AGCT	3 cut(s)	202, 211, 445
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	2 cut(s)	168, 195
ApeKI	GCWGC	4 cut(s)	208, 365, 385, 508
AspLEI	GCGC	4 cut(s)	69, 208, 345, 380
AspS9I	GGNCC	5 cut(s)	75, 169, 178, 244, 373
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	4 cut(s)	75, 178, 244, 373
AxyI	CCTNAGG	1 cut(s)	323
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	220, 352, 397, 495
BccI	CCATC	1 cut(s)	578
BcoDI	GTCTC	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	4 cut(s)	209, 366, 386, 509
BlsI	GCNGC	4 cut(s)	210, 367, 387, 510
Bme18I	GGWCC	4 cut(s)	75, 178, 244, 373
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	5 cut(s)	75, 169, 178, 244, 373
BmiI	GGNNCC	4 cut(s)	141, 171, 180, 329
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	338, 467
Bsa29I	ATCGAT	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	174, 183
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 156, 187, 337
Bse1I	ACTGG	2 cut(s)	130, 552
Bse21I	CCTNAGG	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	174, 183
BseLI	CCNNNNNNNGG	4 cut(s)	136, 156, 187, 337
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	130, 552
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	4 cut(s)	220, 352, 397, 495
BseYI	CCCAGC	2 cut(s)	162, 381
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	170, 197
BshVI	ATCGAT	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	412
BslI	CCNNNNNNNGG	4 cut(s)	136, 156, 187, 337
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	170, 197
BsoBI	CYCGRG	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	4 cut(s)	73, 214, 247, 376
BspANI	GGCC	2 cut(s)	170, 197
BspCNI	CTCAG	1 cut(s)	184
BspDI	ATCGAT	1 cut(s)	534
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	4 cut(s)	141, 171, 180, 329
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	539
BsrI	ACTGG	2 cut(s)	130, 552
BssECI	CCNNGG	2 cut(s)	174, 183
BssMI	GATC	1 cut(s)	531
BssT1I	CCWWGG	2 cut(s)	174, 183
Bst4CI	ACNGT	2 cut(s)	13, 59
Bst6I	CTCTTC	1 cut(s)	474
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	3 cut(s)	50, 71, 204
BstDEI	CTNAG	2 cut(s)	192, 323
BstFNI	CGCG	1 cut(s)	378
BstHHI	GCGC	4 cut(s)	69, 208, 345, 380
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	531
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 208, 349, 365
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	4 cut(s)	220, 352, 397, 495
Bsu15I	ATCGAT	1 cut(s)	534
Bsu36I	CCTNAGG	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	170, 197
BsuTUI	ATCGAT	1 cut(s)	534
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	18, 62
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	3 cut(s)	50, 71, 204
CaiI	CAGNNNCTG	1 cut(s)	365
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	4 cut(s)	69, 208, 345, 380
Cfr13I	GGNCC	5 cut(s)	75, 169, 178, 244, 373
ClaI	ATCGAT	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	55, 133
CviAII	CATG	2 cut(s)	277, 526
CviQI	GTAC	2 cut(s)	55, 133
DdeI	CTNAG	2 cut(s)	192, 323
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	174, 183
Eco47I	GGWCC	4 cut(s)	75, 178, 244, 373
Eco81I	CCTNAGG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	284
EcoO109I	RGGNCCY	2 cut(s)	169, 178
EcoT14I	CCWWGG	2 cut(s)	174, 183
ErhI	CCWWGG	2 cut(s)	174, 183
FaeI	CATG	2 cut(s)	280, 529
FaiI	YATR	3 cut(s)	258, 278, 527
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	2 cut(s)	276, 525
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	4 cut(s)	209, 366, 386, 509
Fsp4HI	GCNGC	4 cut(s)	209, 366, 386, 509
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	4 cut(s)	68, 207, 344, 379
GluI	GCNGC	4 cut(s)	209, 366, 386, 509
GsaI	CCCAGC	2 cut(s)	166, 385
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	170, 197
HapII	CCGG	1 cut(s)	412
HhaI	GCGC	4 cut(s)	69, 208, 345, 380
Hin1II	CATG	2 cut(s)	280, 529
Hin6I	GCGC	4 cut(s)	67, 206, 343, 378
HinP1I	GCGC	4 cut(s)	67, 206, 343, 378
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	2 cut(s)	200, 443
HpaII	CCGG	1 cut(s)	412
Hpy166II	GTNNAC	3 cut(s)	36, 62, 135
Hpy188III	TCNNGA	3 cut(s)	277, 286, 331
Hpy8I	GTNNAC	3 cut(s)	36, 62, 135
Hpy99I	CGWCG	2 cut(s)	516, 578
HpyAV	CCTTC	2 cut(s)	160, 457
HpyCH4III	ACNGT	2 cut(s)	13, 59
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 208, 349, 365
HpyF3I	CTNAG	2 cut(s)	192, 323
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	2 cut(s)	280, 529
HspAI	GCGC	4 cut(s)	67, 206, 343, 378
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	3 cut(s)	216, 333, 340
Lsp1109I	GCAGC	4 cut(s)	220, 352, 397, 495
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	3 cut(s)	469, 491, 568
MluCI	AATT	2 cut(s)	145, 451
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	1 cut(s)	412
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	4 cut(s)	203, 208, 349, 365
NdeII	GATC	1 cut(s)	531
NlaIII	CATG	2 cut(s)	280, 529
NlaIV	GGNNCC	4 cut(s)	141, 171, 180, 329
NmeAIII	GCCGAG	2 cut(s)	242, 424
NmuCI	GTSAC	1 cut(s)	13
NsbI	TGCGCA	1 cut(s)	207
PaeR7I	CTCGAG	1 cut(s)	284
PagI	TCATGA	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	210, 367, 387, 510
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
PspFI	CCCAGC	2 cut(s)	162, 381
PspN4I	GGNNCC	4 cut(s)	141, 171, 180, 329
PspPI	GGNCC	5 cut(s)	75, 169, 178, 244, 373
PspPPI	RGGWCCY	1 cut(s)	178
PsrI	GAACNNNNNNTAC	2 cut(s)	116, 148
PstNI	CAGNNNCTG	1 cut(s)	365
RsaI	GTAC	2 cut(s)	56, 134
RsaNI	GTAC	2 cut(s)	55, 133
RseI	CAYNNNNRTG	1 cut(s)	29
SalI	GTCGAC	1 cut(s)	34
SatI	GCNGC	4 cut(s)	209, 366, 386, 509
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	5 cut(s)	75, 169, 178, 244, 373
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	4 cut(s)	75, 178, 244, 373
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	3 cut(s)	284, 353, 446
SmoI	CTYRAG	3 cut(s)	284, 353, 446
Sse9I	AATT	2 cut(s)	145, 451
SsiI	CCGC	4 cut(s)	73, 214, 247, 376
StyI	CCWWGG	2 cut(s)	174, 183
TaaI	ACNGT	2 cut(s)	13, 59
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	5 cut(s)	35, 270, 285, 534, 576
TasI	AATT	2 cut(s)	145, 451
TatI	WGTACW	1 cut(s)	132
TscAI	CASTG	2 cut(s)	18, 69
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	4 cut(s)	208, 365, 385, 508
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	4 cut(s)	142, 476, 500, 552
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	18, 69
VpaK11BI	GGWCC	4 cut(s)	75, 178, 244, 373
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.