Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009266

Physical Location & Seq

Genomic Coordinates Forward (+)

7632645 .. 7634782

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCAACCACCTCTCGCTTGCTGTACCGCGCACTGCGCCTGCGGTCCTTCTCCACAAGCACAAAGCCAACTCATCACAACAGCCACCAGCAGAACCACCAGTACACGGAACCCAATTCCTTCATTGGGTGCTGGGATGCCCCCAAGGACCCCAAGGAGGCTGAGGCCAAGCTTGCGCAGCTCCGCCGAGACTACGCCAAGCAGGTCAAGGAGGTCCGCAAGGAGTATATCAAGGAGGTCGAGCTCATGAGGCTCGAGAAACTTCGCAAGGACGAGGCTCGTAAAGAAGCCCTTAGGCTCCAGAACGAGGAGCGCAAGAGGCTCAAGGCTGAGGCTGCAAAGGTCCGCGCCCAGCAGCGTGAGGTTGCCGAGCAGGAGTTCCGGCAAACGCTGTTGAAAGAAAGAGCAGAGAAGCTTGAGAATTGGAAGATGAAGGAAAAACAGAAAGAAGAGATGAAAAAAGATGAGAAAGAACTGCTGCGACGTAAGAGTTCCATGTGGATCGATGAACAAGAGCTGGAAAAGAAGATTTTAGAAGCCATCGTCGATACCACACCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

22.53

Weight (kDa)

9.57

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49210 AT5G49210 AT5G49210
fragaria_vesca	FvH4_4g13570 FvH4_4g13570
malus_domestica	MD12G1086100.v1.1 MD14G1080700.v1.1
prunus_persica	Prupe.1G159300_v2.0.a1 Prupe.1G159300_v2.0.a1
pyrus_communis	pycom12g07310 pycom14g07000
rosa_chinensis	RchiOBHm_Chr4g0414321
rosa_laevigata	RLG00000008158
rosa_multiflora	Rmu_sc0005196.1_g000008 Rmu_sc0041188.1_g000002
rosa_roxburghii	Rroxscaffold_5G00358190
rosa_rugosa	Rorug04G0126800
rosa_samantha	Rh4AG184900 Rh4BG184500 Rh4CG197800 Rh4DG182100
rosa_wichuraiana	Rw4G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	193
AccII	CGCG	2 cut(s)	30, 348
AciI	CCGC	5 cut(s)	28, 43, 184, 217, 346
AclWI	GGATC	1 cut(s)	509
AfaI	GTAC	2 cut(s)	26, 104
AfiI	CCNNNNNNNGG	4 cut(s)	106, 126, 157, 307
AgsI	TTSAA	1 cut(s)	397
AluBI	AGCT	5 cut(s)	172, 181, 244, 415, 517
AluI	AGCT	5 cut(s)	172, 181, 244, 415, 517
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	4 cut(s)	178, 335, 355, 478
AspLEI	GCGC	5 cut(s)	32, 39, 178, 315, 350
AspS9I	GGNCC	4 cut(s)	45, 148, 214, 343
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	4 cut(s)	45, 148, 214, 343
AxyI	CCTNAGG	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BbvCI	CCTCAGC	2 cut(s)	162, 330
BbvI	GCAGC	4 cut(s)	190, 322, 367, 465
BccI	CCATC	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	4 cut(s)	179, 336, 356, 479
BlsI	GCNGC	4 cut(s)	180, 337, 357, 480
Bme18I	GGWCC	4 cut(s)	45, 148, 214, 343
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	4 cut(s)	45, 148, 214, 343
BmiI	GGNNCC	3 cut(s)	111, 150, 299
BmsI	GCATC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	284
Bpu10I	CCTNAGC	2 cut(s)	162, 330
BpuEI	CTTGAG	2 cut(s)	308, 437
Bsa29I	ATCGAT	1 cut(s)	504
BsaJI	CCNNGG	2 cut(s)	144, 153
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 126, 157, 307
Bse1I	ACTGG	1 cut(s)	100
Bse21I	CCTNAGG	1 cut(s)	293
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	144, 153
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	4 cut(s)	106, 126, 157, 307
BseMII	CTCAG	2 cut(s)	153, 321
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	4 cut(s)	190, 322, 367, 465
BseYI	CCCAGC	2 cut(s)	132, 351
Bsh1236I	CGCG	2 cut(s)	30, 348
BshFI	GGCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	4 cut(s)	106, 126, 157, 307
BsmAI	GTCTC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	501
BspACI	CCGC	5 cut(s)	28, 43, 184, 217, 346
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	2 cut(s)	154, 322
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	2 cut(s)	30, 348
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	111, 150, 299
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	144, 153
BssMI	GATC	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	144, 153
Bst6I	CTCTTC	1 cut(s)	444
BstC8I	GCNNGC	3 cut(s)	20, 41, 174
BstDEI	CTNAG	3 cut(s)	162, 293, 330
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	2 cut(s)	30, 348
BstHHI	GCGC	5 cut(s)	32, 39, 178, 315, 350
BstKTI	GATC	1 cut(s)	504
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 173, 178, 250, 319, 335
BstUI	CGCG	2 cut(s)	30, 348
BstV1I	GCAGC	4 cut(s)	190, 322, 367, 465
Bsu15I	ATCGAT	1 cut(s)	504
Bsu36I	CCTNAGG	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	3 cut(s)	20, 41, 174
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	5 cut(s)	32, 39, 178, 315, 350
Cfr13I	GGNCC	4 cut(s)	45, 148, 214, 343
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	25, 103
CviAII	CATG	2 cut(s)	247, 496
CviQI	GTAC	2 cut(s)	25, 103
DdeI	CTNAG	3 cut(s)	162, 293, 330
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	2 cut(s)	144, 153
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	4 cut(s)	45, 148, 214, 343
Eco53kI	GAGCTC	1 cut(s)	244
Eco81I	CCTNAGG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	144, 153
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	2 cut(s)	144, 153
FaeI	CATG	2 cut(s)	250, 499
FaiI	YATR	3 cut(s)	228, 248, 497
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FatI	CATG	2 cut(s)	246, 495
Fnu4HI	GCNGC	4 cut(s)	179, 336, 356, 479
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	179, 336, 356, 479
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	5 cut(s)	31, 38, 177, 314, 349
GluI	GCNGC	4 cut(s)	179, 336, 356, 479
GsaI	CCCAGC	2 cut(s)	136, 355
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	5 cut(s)	32, 39, 178, 315, 350
Hin1II	CATG	2 cut(s)	250, 499
Hin6I	GCGC	5 cut(s)	30, 37, 176, 313, 348
HinP1I	GCGC	5 cut(s)	30, 37, 176, 313, 348
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	2 cut(s)	170, 413
HpaII	CCGG	1 cut(s)	382
Hpy166II	GTNNAC	2 cut(s)	6, 105
Hpy188III	TCNNGA	3 cut(s)	247, 256, 301
Hpy8I	GTNNAC	2 cut(s)	6, 105
Hpy99I	CGWCG	2 cut(s)	486, 548
HpyAV	CCTTC	3 cut(s)	58, 130, 427
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 173, 178, 250, 319, 335
HpyF3I	CTNAG	3 cut(s)	162, 293, 330
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	2 cut(s)	250, 499
HspAI	GCGC	5 cut(s)	30, 37, 176, 313, 348
Kzo9I	GATC	1 cut(s)	501
LmnI	GCTCC	3 cut(s)	186, 303, 310
Lsp1109I	GCAGC	4 cut(s)	190, 322, 367, 465
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	484
MalI	GATC	1 cut(s)	503
MboI	GATC	1 cut(s)	501
MboII	GAAGA	3 cut(s)	439, 461, 538
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	115, 421
MspI	CCGG	1 cut(s)	382
MvnI	CGCG	2 cut(s)	30, 348
MwoI	GCNNNNNNNGC	6 cut(s)	36, 173, 178, 250, 319, 335
NdeII	GATC	1 cut(s)	501
NlaIII	CATG	2 cut(s)	250, 499
NlaIV	GGNNCC	3 cut(s)	111, 150, 299
NmeAIII	GCCGAG	2 cut(s)	212, 394
NsbI	TGCGCA	1 cut(s)	177
PaeR7I	CTCGAG	1 cut(s)	254
PagI	TCATGA	1 cut(s)	246
PkrI	GCNGC	4 cut(s)	180, 337, 357, 480
PpuMI	RGGWCCY	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	148
PspFI	CCCAGC	2 cut(s)	132, 351
PspN4I	GGNNCC	3 cut(s)	111, 150, 299
PspPI	GGNCC	4 cut(s)	45, 148, 214, 343
PspPPI	RGGWCCY	1 cut(s)	148
PsrI	GAACNNNNNNTAC	2 cut(s)	86, 118
RsaI	GTAC	2 cut(s)	26, 104
RsaNI	GTAC	2 cut(s)	25, 103
SacI	GAGCTC	1 cut(s)	246
SatI	GCNGC	4 cut(s)	179, 336, 356, 479
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	4 cut(s)	45, 148, 214, 343
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	254
SinI	GGWCC	4 cut(s)	45, 148, 214, 343
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	3 cut(s)	254, 323, 416
SmoI	CTYRAG	3 cut(s)	254, 323, 416
Sse9I	AATT	2 cut(s)	115, 421
SsiI	CCGC	5 cut(s)	28, 43, 184, 217, 346
SstI	GAGCTC	1 cut(s)	246
StyI	CCWWGG	2 cut(s)	144, 153
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	4 cut(s)	240, 255, 504, 546
TasI	AATT	2 cut(s)	115, 421
TatI	WGTACW	1 cut(s)	102
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	4 cut(s)	178, 335, 355, 478
TspDTI	ATGAA	4 cut(s)	112, 446, 470, 522
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	4 cut(s)	45, 148, 214, 343
XhoI	CTCGAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.