Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009266

Physical Location & Seq

Genomic Coordinates Reverse (-)

46011275 .. 46016019

Gene Structure 4745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGTCCTCCCGGTCTTCACTCTACCGCACCCTCCGCTCCTTCTCCACCACCACCAGGCCCTCCCACCACAACAGCCACCACCACACTCACCGCTACACCGAGCCGAGCTCCTTCATCGGAAGCTGGGACGCGCCGAGCAACCCCAAGGAGGCTCTGGCCAAGCTCGCGCATCTCCGGCGAGACTACGCGAAGCAGGTCAAGGAGATCCGCAAGGAATACATCAAGGAGGTCGAGCTGATGAGGCTGGAGAAGCTCCGAAAGGACGAGGCCCGTAAAGAAGCCCTCAGGCTCCAGAACGAGGAGCGCAAGAGGCTCAAGGCCGAGGCCGCTAAGGTCCGGGCCCAACAGCGCCAGGTCGCCGAGGAGGAGTTCCGCCAAACCCTATTAAAAGAAAGAGCAGAAAAGCTTGAGAATTGGAAGATGAAGGAAATGCTTAGGGAAGATAAGAAAAAACAGAAGAATGAACTGCTACAACGTCAGAGTTCCCTATGGATTGATGAACCAGAACTGGAAAAGAAGATGCTTGAAGCCATTGTTGATACCAGACCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

22.2

Weight (kDa)

9.86

Isoelectric Point (pI)

57.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49210 AT5G49210 AT5G49210
fragaria_vesca	FvH4_4g13570 FvH4_4g13570
malus_domestica	MD12G1086100.v1.1 MD14G1080700.v1.1
prunus_persica	Prupe.1G159300_v2.0.a1 Prupe.1G159300_v2.0.a1
pyrus_communis	pycom12g07310 pycom14g07000
rosa_chinensis	RchiOBHm_Chr4g0414321
rosa_laevigata	RLG00000008158
rosa_multiflora	Rmu_sc0005196.1_g000008 Rmu_sc0041188.1_g000002
rosa_roxburghii	Rroxscaffold_5G00358190
rosa_rugosa	Rorug04G0126800
rosa_samantha	Rh4AG184900 Rh4BG184500 Rh4CG197800 Rh4DG182100
rosa_wichuraiana	Rw4G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	3 cut(s)	134, 170, 191
AciI	CCGC	6 cut(s)	28, 37, 94, 211, 330, 376
AclWI	GGATC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	57, 151, 301
AgsI	TTSAA	1 cut(s)	530
AjnI	CCWGG	2 cut(s)	56, 354
AluBI	AGCT	6 cut(s)	111, 126, 166, 238, 256, 409
AluI	AGCT	6 cut(s)	111, 126, 166, 238, 256, 409
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	6 cut(s)	59, 159, 270, 321, 327, 342
ApaI	GGGCCC	1 cut(s)	346
AspLEI	GCGC	4 cut(s)	136, 172, 309, 354
AspS9I	GGNCC	5 cut(s)	60, 271, 337, 342, 343
AsuC2I	CCSGG	2 cut(s)	13, 341
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	337
AxyI	CCTNAGG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	113, 346
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	58, 356
BcnI	CCSGG	2 cut(s)	13, 341
BcoDI	GTCTC	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	4 cut(s)	13, 58, 341, 356
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	5 cut(s)	60, 271, 337, 342, 343
BmiI	GGNNCC	2 cut(s)	293, 344
BmrFI	CCNGG	4 cut(s)	13, 58, 341, 356
BmsI	GCATC	2 cut(s)	181, 513
BpiI	GAAGAC	1 cut(s)	9
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpmI	CTGGAG	2 cut(s)	269, 278
Bpu10I	CCTNAGC	2 cut(s)	333, 437
BpuEI	CTTGAG	2 cut(s)	302, 431
BpuMI	CCSGG	2 cut(s)	13, 341
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	147, 324, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 151, 301
Bse1I	ACTGG	1 cut(s)	516
Bse21I	CCTNAGG	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	58, 356
BseDI	CCNNGG	3 cut(s)	147, 324, 363
BseLI	CCNNNNNNNGG	3 cut(s)	57, 151, 301
BseMII	CTCAG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	3 cut(s)	317, 380, 383
BseSI	GKGCMC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	126
Bsh1236I	CGCG	3 cut(s)	134, 170, 191
BshFI	GGCC	6 cut(s)	61, 161, 272, 323, 329, 344
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	13, 178, 340
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	57, 151, 301
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	6 cut(s)	61, 161, 272, 323, 329, 344
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	113, 346
Bsp143I	GATC	1 cut(s)	207
BspACI	CCGC	6 cut(s)	28, 37, 94, 211, 330, 376
BspANI	GGCC	6 cut(s)	61, 161, 272, 323, 329, 344
BspCNI	CTCAG	1 cut(s)	300
BspFNI	CGCG	3 cut(s)	134, 170, 191
BspLI	GGNNCC	2 cut(s)	293, 344
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	3 cut(s)	147, 324, 363
BssMI	GATC	1 cut(s)	207
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	58, 356
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	287, 333, 437
BstFNI	CGCG	3 cut(s)	134, 170, 191
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	4 cut(s)	136, 172, 309, 354
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 167, 178, 244, 253, 313, 329
BstNI	CCWGG	2 cut(s)	58, 356
BstSCI	CCNGG	4 cut(s)	11, 56, 339, 354
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	3 cut(s)	134, 170, 191
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	287
BsuRI	GGCC	6 cut(s)	61, 161, 272, 323, 329, 344
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	4 cut(s)	136, 172, 309, 354
Cfr13I	GGNCC	5 cut(s)	60, 271, 337, 342, 343
CseI	GACGC	1 cut(s)	140
DdeI	CTNAG	3 cut(s)	287, 333, 437
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	365
Ecl136II	GAGCTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	2 cut(s)	113, 346
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	56, 354
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	113, 346
ErhI	CCWWGG	1 cut(s)	147
FaiI	YATR	1 cut(s)	493
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	330
FriOI	GRGCYC	2 cut(s)	113, 346
Fsp4HI	GCNGC	1 cut(s)	330
GlaI	GCGC	4 cut(s)	135, 171, 308, 353
GluI	GCNGC	1 cut(s)	330
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	2 cut(s)	269, 278
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	6 cut(s)	61, 161, 272, 323, 329, 344
HapII	CCGG	3 cut(s)	13, 178, 340
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	4 cut(s)	136, 172, 309, 354
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	4 cut(s)	134, 170, 307, 352
HinP1I	GCGC	4 cut(s)	134, 170, 307, 352
HindIII	AAGCTT	1 cut(s)	407
HpaII	CCGG	3 cut(s)	13, 178, 340
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	3 cut(s)	122, 260, 483
Hpy188III	TCNNGA	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	52, 124, 421
HpyCH4IV	ACGT	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 167, 178, 244, 253, 313, 329
HpyF3I	CTNAG	3 cut(s)	287, 333, 437
HpySE526I	ACGT	1 cut(s)	478
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	4 cut(s)	134, 170, 307, 352
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	5 cut(s)	44, 116, 261, 297, 304
LweI	GCATC	2 cut(s)	181, 513
MaeII	ACGT	1 cut(s)	478
MalI	GATC	1 cut(s)	209
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	1 cut(s)	207
MboII	GAAGA	5 cut(s)	9, 433, 455, 472, 532
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	2 cut(s)	113, 346
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	1 cut(s)	415
MluNI	TGGCCA	1 cut(s)	161
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	161
MspI	CCGG	3 cut(s)	13, 178, 340
MspR9I	CCNGG	4 cut(s)	13, 58, 341, 356
MvaI	CCWGG	2 cut(s)	58, 356
MvnI	CGCG	3 cut(s)	134, 170, 191
MwoI	GCNNNNNNNGC	7 cut(s)	36, 167, 178, 244, 253, 313, 329
NciI	CCSGG	2 cut(s)	13, 341
NdeII	GATC	1 cut(s)	207
NlaIV	GGNNCC	2 cut(s)	293, 344
NmeAIII	GCCGAG	4 cut(s)	132, 162, 349, 388
PkrI	GCNGC	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	56, 354
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	2 cut(s)	56, 354
PspN4I	GGNNCC	2 cut(s)	293, 344
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	5 cut(s)	60, 271, 337, 342, 343
PsuI	RGATCY	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	5 cut(s)	60, 271, 337, 342, 343
ScrFI	CCNGG	4 cut(s)	13, 58, 341, 356
SduI	GDGCHC	2 cut(s)	113, 346
SfaNI	GCATC	2 cut(s)	181, 513
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	2 cut(s)	317, 410
SmoI	CTYRAG	2 cut(s)	317, 410
Sse9I	AATT	1 cut(s)	415
SsiI	CCGC	6 cut(s)	28, 37, 94, 211, 330, 376
SstI	GAGCTC	1 cut(s)	113
StyD4I	CCNGG	4 cut(s)	11, 56, 339, 354
StyI	CCWWGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	415
TauI	GCSGC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TspDTI	ATGAA	4 cut(s)	106, 440, 480, 516
VpaK11BI	GGWCC	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.