Prupe.1G159300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009266
Physical Location & Seq
Forward (+)
12666864 .. 12675182
8319 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G159300.2

Sequence Viewer

Length: 564 bp
ATGGCGACCACGTCTCGCTCACTGTACCGTACACTGCGCCTGCGGTCCTTCTCCACAAGTACGAAGCCGTCGCACCACAACAGCCACCAGCAGAATCACCAGTACACAGATCCCAATTCCTTCATCGGGTGCTGGGAGGCCCCCAAGGACCCCAAGGAGGCCGAGGCCAAGCTTGCGCAGCTCCGCAGAGACTACGCCAAGCAGGTCAAGGAGGTCCGCAAGGAGTACATCCAGGAGGTCGAGCTCATGAGGCTCGAGAAGCTTCGCAAGGACGAGGCTCGTAAAGAAGCCCTTAGGCTCCAAAATGAGGAGCGTAAGAGACTCAAGGCTGAGGCTGCTAAGGTCCGTGCCCAACAGCGTGAGGTTGCTGAGCAGGAGTTCCGCCAGACCCTGTTAAAAGAAAGAGCAGAGAAGCTTGAGAATTGGAAGATGAAGGAAAAAATGAGAGAAGAGAAGAAAAAAGAGAAGAATGAACTGTTGCGACGTCAGAGTTCCTTGTGGATCAATGAACCAGAACTGGAAAAGAAGATTTTAGAAGCCATCGTTGATACTACACCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

22.48

Weight (kDa)

9.68

Isoelectric Point (pI)

51.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 487
Acc16I TGCGCA 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 193
AciI CCGC 4 cut(s) 43, 184, 217, 382
AclWI GGATC 2 cut(s) 104, 509
AcyI GRCGYC 1 cut(s) 484
AfaI GTAC 5 cut(s) 26, 31, 61, 104, 227
AfiI CCNNNNNNNGG 3 cut(s) 126, 157, 307
AjiI CACGTC 1 cut(s) 12
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 5 cut(s) 172, 181, 244, 262, 415
AluI AGCT 5 cut(s) 172, 181, 244, 262, 415
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 3 cut(s) 18, 183, 313
AlwI GGATC 2 cut(s) 104, 509
AlwNI CAGNNNCTG 1 cut(s) 391
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 3 cut(s) 138, 159, 165
ApeKI GCWGC 2 cut(s) 178, 335
AspLEI GCGC 2 cut(s) 39, 178
AspS9I GGNCC 5 cut(s) 45, 139, 148, 214, 343
AsuHPI GGTGA 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 4 cut(s) 45, 148, 214, 343
AxyI CCTNAGG 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 190, 322
BccI CCATC 1 cut(s) 548
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 18, 183, 313
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 2 cut(s) 179, 336
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 2 cut(s) 180, 337
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 4 cut(s) 45, 148, 214, 343
BmeT110I CYCGRG 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 12
BmgT120I GGNCC 5 cut(s) 45, 139, 148, 214, 343
BmiI GGNNCC 3 cut(s) 141, 150, 299
BmrFI CCNGG 1 cut(s) 233
Bpu10I CCTNAGC 2 cut(s) 330, 339
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 308, 437
BsaHI GRCGYC 1 cut(s) 484
BsaJI CCNNGG 3 cut(s) 144, 153, 162
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 157, 307
Bse1I ACTGG 2 cut(s) 100, 522
Bse21I CCTNAGG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 3 cut(s) 144, 153, 162
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 126, 157, 307
BseMII CTCAG 2 cut(s) 321, 360
BseNI ACTGG 2 cut(s) 100, 522
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 2 cut(s) 190, 322
BseYI CCCAGC 1 cut(s) 132
BshFI GGCC 3 cut(s) 140, 161, 167
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 254
BslI CCNNNNNNNGG 3 cut(s) 126, 157, 307
BsmAI GTCTC 3 cut(s) 18, 183, 313
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 3 cut(s) 140, 161, 167
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 246, 352
Bsp143I GATC 2 cut(s) 109, 501
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 4 cut(s) 43, 184, 217, 382
BspANI GGCC 3 cut(s) 140, 161, 167
BspCNI CTCAG 2 cut(s) 322, 361
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 141, 150, 299
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 2 cut(s) 104, 509
BsrI ACTGG 2 cut(s) 100, 522
BssECI CCNNGG 3 cut(s) 144, 153, 162
BssMI GATC 2 cut(s) 109, 501
BssNI GRCGYC 1 cut(s) 484
BssT1I CCWWGG 2 cut(s) 144, 153
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 3 cut(s) 24, 29, 477
Bst6I CTCTTC 1 cut(s) 444
BstACI GRCGYC 1 cut(s) 484
BstC8I GCNNGC 2 cut(s) 41, 174
BstDEI CTNAG 4 cut(s) 293, 330, 339, 369
BstF5I GGATG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 39, 178
BstKTI GATC 2 cut(s) 112, 504
BstMAI GTCTC 3 cut(s) 18, 183, 313
BstMBI GATC 2 cut(s) 109, 501
BstMWI GCNNNNNNNGC 5 cut(s) 173, 178, 250, 259, 335
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 190, 322
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
Bsu36I CCTNAGG 1 cut(s) 293
BsuRI GGCC 3 cut(s) 140, 161, 167
BtrI CACGTC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 228
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 20, 32
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 41, 174
CaiI CAGNNNCTG 1 cut(s) 391
CciI TCATGA 1 cut(s) 246
CfoI GCGC 2 cut(s) 39, 178
Cfr13I GGNCC 5 cut(s) 45, 139, 148, 214, 343
Csp6I GTAC 5 cut(s) 25, 30, 60, 103, 226
CviAII CATG 1 cut(s) 247
CviQI GTAC 5 cut(s) 25, 30, 60, 103, 226
DdeI CTNAG 4 cut(s) 293, 330, 339, 369
DpnI GATC 2 cut(s) 111, 503
DpnII GATC 2 cut(s) 109, 501
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
EciI GGCGGA 1 cut(s) 371
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 144, 153
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 4 cut(s) 45, 148, 214, 343
Eco53kI GAGCTC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 244
EcoO109I RGGNCCY 2 cut(s) 139, 148
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 2 cut(s) 144, 153
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 2 cut(s) 144, 153
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 1 cut(s) 250
FaiI YATR 1 cut(s) 248
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 179, 336
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 179, 336
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 2 cut(s) 38, 177
GluI GCNGC 2 cut(s) 179, 336
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 3 cut(s) 140, 161, 167
HhaI GCGC 2 cut(s) 39, 178
Hin1I GRCGYC 1 cut(s) 484
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 2 cut(s) 37, 176
HinP1I GCGC 2 cut(s) 37, 176
HindIII AAGCTT 3 cut(s) 170, 260, 413
HinfI GANTC 2 cut(s) 94, 321
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 32, 105
Hpy188I TCNGA 1 cut(s) 489
Hpy188III TCNNGA 2 cut(s) 247, 256
Hpy8I GTNNAC 2 cut(s) 32, 105
Hpy99I CGWCG 2 cut(s) 73, 486
HpyAV CCTTC 3 cut(s) 58, 130, 427
HpyCH4III ACNGT 3 cut(s) 24, 29, 477
HpyCH4IV ACGT 2 cut(s) 11, 484
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 178, 250, 259, 335
HpyF3I CTNAG 4 cut(s) 293, 330, 339, 369
HpySE526I ACGT 2 cut(s) 11, 484
Hsp92I GRCGYC 1 cut(s) 484
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 2 cut(s) 37, 176
Kzo9I GATC 2 cut(s) 109, 501
LmnI GCTCC 3 cut(s) 186, 303, 310
Lsp1109I GCAGC 2 cut(s) 190, 322
MaeII ACGT 2 cut(s) 11, 484
MalI GATC 2 cut(s) 111, 503
MboI GATC 2 cut(s) 109, 501
MboII GAAGA 5 cut(s) 439, 461, 466, 478, 538
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 246, 352
MluCI AATT 2 cut(s) 115, 421
MlyI GAGTC 1 cut(s) 315
MseI TTAA 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 5 cut(s) 173, 178, 250, 259, 335
NdeII GATC 2 cut(s) 109, 501
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 3 cut(s) 141, 150, 299
NmeAIII GCCGAG 1 cut(s) 187
NsbI TGCGCA 1 cut(s) 177
PaeR7I CTCGAG 1 cut(s) 254
PagI TCATGA 1 cut(s) 246
PfeI GAWTC 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 2 cut(s) 180, 337
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 3 cut(s) 141, 150, 299
PspPI GGNCC 5 cut(s) 45, 139, 148, 214, 343
PspPPI RGGWCCY 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 391
PsuI RGATCY 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 10
RsaI GTAC 5 cut(s) 26, 31, 61, 104, 227
RsaNI GTAC 5 cut(s) 25, 30, 60, 103, 226
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 2 cut(s) 179, 336
Sau3AI GATC 2 cut(s) 109, 501
Sau96I GGNCC 5 cut(s) 45, 139, 148, 214, 343
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 246, 352
Sfr274I CTCGAG 1 cut(s) 254
SinI GGWCC 4 cut(s) 45, 148, 214, 343
SlaI CTCGAG 1 cut(s) 254
SmlI CTYRAG 3 cut(s) 254, 323, 416
SmoI CTYRAG 3 cut(s) 254, 323, 416
Sse9I AATT 2 cut(s) 115, 421
SsiI CCGC 4 cut(s) 43, 184, 217, 382
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 2 cut(s) 144, 153
TaaI ACNGT 3 cut(s) 24, 29, 477
TaiI ACGT 2 cut(s) 14, 487
TaqI TCGA 2 cut(s) 240, 255
TasI AATT 2 cut(s) 115, 421
TatI WGTACW 2 cut(s) 102, 225
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 2 cut(s) 27, 39
TseI GCWGC 2 cut(s) 178, 335
TspDTI ATGAA 4 cut(s) 112, 446, 486, 522
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 2 cut(s) 27, 39
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 4 cut(s) 45, 148, 214, 343
XhoI CTCGAG 1 cut(s) 254
ZraI GACGTC 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.