FvH4_4g14100

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012389
Physical Location & Seq
Reverse (-)
17637803 .. 17640234
2432 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14100.t1

Sequence Viewer

Length: 750 bp
ATGAACACGATGCACTACGCGGAGGTGAGCACCACCGCCGGCAAGCTCGAGGAGGTCGACATCGAGTCCGGCGAACTCTTGTACCCCGGCATCAGCAAAGGCGAGAATCAGCTCCGATGGGGTTTCATTCGCAAGGTCTACGGCATCTTATCCGCTCAGCTTCTCCTCACCACCGCCATCTCCTTCGTGACCGTCCTCTATACTCCCGTCAACGACCTCCTCAAAGGCAGCCCTGGCCTTCTCTTGTTTTTCGCCTTCCTTCCTCTCGTCTTGTTGTGGCCCCTTCATGTGTACCAGCAAAGGCATCCTCTGAACTTTATCTTCCTTGGACTTTTCACTCTGAGTCTGAGTGTCACTGTTGGTGTAGCGGTTGCTAATACTGATGGAGCGATTGTGCTTGAAGCCTTGATTCTAACCTCGGGTGTGGTTGCATCCTTGACTGCTTACACCTTCTGGGCTTCAAAGAAGGGGAAGGACTTCAGCTTCCTTGGACCAGTCCTGTTCACTGGCCTCATGGTTCTCCTCTTGACCAGCTTCATGCAGATGTTCTTCCCACTTGGTCCTACTTCTAATGCTGTCATTGGTGCTGCTGGTGCTATTCTCTTCTCTGGCTATATAGTCTACGATACTGAGAACCTCATCAAGCGCTTTACGTATGATGAGTACATCTGGGCCTCCATCACTCTTTACCTTGATATTCTGAATCTGTTCCTTACAATCTTGCGGATGCTGAGGCAGAGCGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

250

Amino Acids

27.56

Weight (kDa)

5.57

Isoelectric Point (pI)

28.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 41 - 244 9.7e-50 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15470
fragaria_vesca FvH4_4g14100
malus_domestica MD13G1179700.v1.1 MD16G1180700.v1.1
prunus_persica Prupe.1G148200_v2.0.a1 Prupe.1G148200_v2.0.a1
pyrus_communis pycom13g15490 pycom16g15180
rosa_chinensis RchiOBHm_Chr4g0419241
rosa_laevigata RLG00000007822
rosa_multiflora Rmu_sc0004932.1_g000001 Rmu_sc0019148.1_g000001
rosa_roxburghii Rroxscaffold_5G00362220
rosa_rugosa Rorug04G0157600
rosa_samantha Rh4AG219600 Rh4BG221100 Rh4CG232200 Rh4DG218600
rosa_wichuraiana Rw4G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 155
AccI GTMKAC 3 cut(s) 57, 138, 621
AccII CGCG 1 cut(s) 20
AciI CCGC 6 cut(s) 20, 36, 153, 174, 368, 724
AcuI CTGAAG 1 cut(s) 463
AfaI GTAC 3 cut(s) 83, 293, 665
AfeI AGCGCT 1 cut(s) 647
AgsI TTSAA 2 cut(s) 401, 462
AhdI GACNNNNNGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 5 cut(s) 46, 112, 160, 483, 534
AluI AGCT 5 cut(s) 46, 112, 160, 483, 534
Alw21I GWGCWC 1 cut(s) 32
Ama87I CYCGRG 2 cut(s) 47, 418
Aor51HI AGCGCT 1 cut(s) 647
AoxI GGCC 4 cut(s) 235, 278, 508, 672
ApeKI GCWGC 2 cut(s) 228, 587
Asp700I GAANNNNTTC 2 cut(s) 476, 707
AspLEI GCGC 1 cut(s) 648
AspS9I GGNCC 4 cut(s) 279, 491, 560, 672
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 37, 160
AvaI CYCGRG 2 cut(s) 47, 418
AvaII GGWCC 2 cut(s) 491, 560
BaeI ACNNNNGTAYC 2 cut(s) 65, 98
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 731
BbvI GCAGC 2 cut(s) 240, 574
BccI CCATC 4 cut(s) 111, 185, 377, 686
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 649
BisI GCNGC 2 cut(s) 229, 588
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 2 cut(s) 230, 589
Bme1390I CCNGG 2 cut(s) 87, 234
Bme18I GGWCC 2 cut(s) 491, 560
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 2 cut(s) 47, 418
BmgT120I GGNCC 4 cut(s) 279, 491, 560, 672
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 2 cut(s) 87, 234
BmsI GCATC 5 cut(s) 99, 153, 313, 440, 717
Bpu10I CCTNAGC 1 cut(s) 731
Bpu1102I GCTNAGC 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 654
BsaJI CCNNGG 5 cut(s) 85, 232, 325, 417, 487
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 2 cut(s) 494, 511
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 5 cut(s) 85, 232, 325, 417, 487
BseGI GGATG 3 cut(s) 304, 431, 732
BseMII CTCAG 5 cut(s) 170, 332, 338, 621, 722
BseNI ACTGG 2 cut(s) 494, 511
BseRI GAGGAG 4 cut(s) 65, 155, 209, 512
BseXI GCAGC 2 cut(s) 240, 574
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 4 cut(s) 237, 280, 510, 674
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 2 cut(s) 47, 418
BsiSI CCGG 3 cut(s) 39, 69, 87
BsnI GGCC 4 cut(s) 237, 280, 510, 674
BsoBI CYCGRG 2 cut(s) 47, 418
Bsp1286I GDGCHC 1 cut(s) 32
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 6 cut(s) 20, 36, 153, 174, 368, 724
BspANI GGCC 4 cut(s) 237, 280, 510, 674
BspCNI CTCAG 5 cut(s) 169, 333, 339, 622, 723
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 2 cut(s) 494, 511
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 5 cut(s) 85, 232, 325, 417, 487
BssT1I CCWWGG 2 cut(s) 325, 487
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 193, 358
Bst6I CTCTTC 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 654
BstC8I GCNNGC 2 cut(s) 40, 44
BstDEI CTNAG 6 cut(s) 156, 341, 347, 630, 731, 747
BstF5I GGATG 3 cut(s) 304, 431, 732
BstFNI CGCG 1 cut(s) 20
BstH2I RGCGCY 1 cut(s) 649
BstHHI GCGC 1 cut(s) 648
BstMWI GCNNNNNNNGC 2 cut(s) 234, 593
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 2 cut(s) 85, 232
BstSNI TACGTA 1 cut(s) 654
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 240, 574
BsuRI GGCC 4 cut(s) 237, 280, 510, 674
BtsCI GGATG 3 cut(s) 304, 431, 732
BtsIMutI CAGTG 2 cut(s) 354, 504
Cac8I GCNNGC 2 cut(s) 40, 44
CfoI GCGC 1 cut(s) 648
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 4 cut(s) 279, 491, 560, 672
Csp6I GTAC 3 cut(s) 82, 292, 664
CviAII CATG 3 cut(s) 287, 514, 538
CviQI GTAC 3 cut(s) 82, 292, 664
DdeI CTNAG 6 cut(s) 156, 341, 347, 630, 731, 747
DriI GACNNNNNGTC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 608
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 608
Eco105I TACGTA 1 cut(s) 654
Eco130I CCWWGG 2 cut(s) 325, 487
Eco47I GGWCC 2 cut(s) 491, 560
Eco47III AGCGCT 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 463
Eco88I CYCGRG 2 cut(s) 47, 418
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 325, 487
ErhI CCWWGG 2 cut(s) 325, 487
FaeI CATG 3 cut(s) 290, 517, 541
FaiI YATR 7 cut(s) 201, 288, 515, 539, 615, 617, 657
FatI CATG 3 cut(s) 286, 513, 537
FblI GTMKAC 3 cut(s) 57, 138, 621
Fnu4HI GCNGC 2 cut(s) 229, 588
FokI GGATG 3 cut(s) 291, 418, 739
Fsp4HI GCNGC 2 cut(s) 229, 588
GlaI GCGC 1 cut(s) 647
GluI GCNGC 2 cut(s) 229, 588
HaeII RGCGCY 1 cut(s) 649
HaeIII GGCC 4 cut(s) 237, 280, 510, 674
HapII CCGG 3 cut(s) 39, 69, 87
HhaI GCGC 1 cut(s) 648
Hin1II CATG 3 cut(s) 290, 517, 541
Hin6I GCGC 1 cut(s) 646
HinP1I GCGC 1 cut(s) 646
HincII GTYRAC 2 cut(s) 58, 211
HindII GTYRAC 2 cut(s) 58, 211
HinfI GANTC 6 cut(s) 65, 106, 343, 409, 703, 743
HpaII CCGG 3 cut(s) 39, 69, 87
HphI GGTGA 2 cut(s) 37, 160
Hpy166II GTNNAC 6 cut(s) 58, 139, 211, 292, 504, 622
Hpy188I TCNGA 5 cut(s) 116, 312, 342, 348, 702
Hpy188III TCNNGA 2 cut(s) 187, 526
Hpy8I GTNNAC 6 cut(s) 58, 139, 211, 292, 504, 622
HpyAV CCTTC 8 cut(s) 193, 248, 265, 269, 293, 460, 460, 466
HpyCH4III ACNGT 2 cut(s) 193, 358
HpyCH4IV ACGT 1 cut(s) 653
HpyCH4V TGCA 3 cut(s) 13, 431, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 593
HpyF3I CTNAG 6 cut(s) 156, 341, 347, 630, 731, 747
HpySE526I ACGT 1 cut(s) 653
Hsp92II CATG 3 cut(s) 290, 517, 541
HspAI GCGC 1 cut(s) 646
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
LmnI GCTCC 2 cut(s) 117, 386
Lsp1109I GCAGC 2 cut(s) 240, 574
LweI GCATC 5 cut(s) 99, 153, 313, 440, 717
MaeII ACGT 1 cut(s) 653
MaeIII GTNAC 2 cut(s) 187, 352
MbiI CCGCTC 1 cut(s) 155
MboII GAAGA 3 cut(s) 313, 541, 595
MhlI GDGCHC 1 cut(s) 32
MlyI GAGTC 3 cut(s) 74, 352, 737
MroNI GCCGGC 1 cut(s) 38
MroXI GAANNNNTTC 2 cut(s) 476, 707
MslI CAYNNNNRTG 1 cut(s) 542
MspI CCGG 3 cut(s) 39, 69, 87
MspR9I CCNGG 2 cut(s) 87, 234
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 234, 593
NaeI GCCGGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 87
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 3 cut(s) 290, 517, 541
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 2 cut(s) 187, 352
PaeR7I CTCGAG 1 cut(s) 47
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 69
PdiI GCCGGC 1 cut(s) 40
PdmI GAANNNNTTC 2 cut(s) 476, 707
PfeI GAWTC 3 cut(s) 106, 409, 703
PkrI GCNGC 2 cut(s) 230, 589
PleI GAGTC 3 cut(s) 73, 351, 737
PpsI GAGTC 3 cut(s) 73, 351, 737
Ppu21I YACGTR 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 4 cut(s) 279, 491, 560, 672
PspXI VCTCGAGB 1 cut(s) 47
RsaI GTAC 3 cut(s) 83, 293, 665
RsaNI GTAC 3 cut(s) 82, 292, 664
RseI CAYNNNNRTG 1 cut(s) 542
SalI GTCGAC 1 cut(s) 56
SatI GCNGC 2 cut(s) 229, 588
Sau96I GGNCC 4 cut(s) 279, 491, 560, 672
SchI GAGTC 3 cut(s) 74, 352, 737
ScrFI CCNGG 2 cut(s) 87, 234
SduI GDGCHC 1 cut(s) 32
SfaNI GCATC 5 cut(s) 99, 153, 313, 440, 717
Sfr274I CTCGAG 1 cut(s) 47
SinI GGWCC 2 cut(s) 491, 560
SlaI CTCGAG 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
SnaBI TACGTA 1 cut(s) 654
SsiI CCGC 6 cut(s) 20, 36, 153, 174, 368, 724
StyD4I CCNGG 2 cut(s) 85, 232
StyI CCWWGG 2 cut(s) 325, 487
TaaI ACNGT 2 cut(s) 193, 358
TaiI ACGT 1 cut(s) 656
TaqI TCGA 3 cut(s) 48, 57, 63
TatI WGTACW 1 cut(s) 663
TfiI GAWTC 3 cut(s) 106, 409, 703
TscAI CASTG 2 cut(s) 361, 511
TseFI GTSAC 2 cut(s) 187, 352
TseI GCWGC 2 cut(s) 228, 587
Tsp45I GTSAC 2 cut(s) 187, 352
TspDTI ATGAA 4 cut(s) 17, 115, 275, 526
TspRI CASTG 2 cut(s) 361, 511
VpaK11BI GGWCC 2 cut(s) 491, 560
XhoI CTCGAG 1 cut(s) 47
XmiI GTMKAC 3 cut(s) 57, 138, 621
XmnI GAANNNNTTC 2 cut(s) 476, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.