Prupe.1G148200_v2.0.a1

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012389
Physical Location & Seq
Reverse (-)
11618679 .. 11620592
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G148200.1

Sequence Viewer

Length: 753 bp
ATGAACAAGATGCACGGATACACGGAGGTGGGCACGAACAGCGTCAAGGGAGTGGAGGTAGACATAGAGTCAGGGGAGACCTTGTACCCAGGGCTAAGCAAAGGCGAGAACCAGCTCCGATGGGGTTTCATTCGCAAGGTCTACGGAATCTTAGCCGCTCAGATGGTTTTGACCACTCTCATCTCATTCGTCACCGTTCTCTATGCTCCGATCAACGATCTCCTCAAGGGCAGCCCTGGAATTCTCCTCTTCTTCGCCATCCTTCCCTTAATCTTGTTGTGGCCCCTGCATGTGTATCAGCAGAAGCATCCCCTCAATTTTGTCTTCCTTGGACTTTTCACTCTGTGTTTGAGTGTCACAGTGGGTGTGGCCGTTGGTAATACAGATGGAGCAATTGTGCTTGAAGCCTTAGTTCTAACCTCAGCTGTGGTTGCATCCTTGACCGCGTACACCTTCTGGGCTTCTAAGAAGGGCAAGGACTTCAGCTTCCTCGGACCAGTCTTGTTTACTGGCCTCATTGTCCTCCTCGTAACCGGGTTCATGCAGATGTTCTTCCCTCTTGGCTCTACAACTAATGCTGTTTATGGTGCCATTGGTGCTGTCATCTTCTCTGGGTACATCGTTTATGACACCGACAACCTAATCAAGCGCTTTACTTATGATGAGTACATCTGGGCCTCCATCACCCTTTATCTTGACATCCTGAACCTGTTCCTGACTATATTGCGGATGCTGAGGCAAAGCAACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

251

Amino Acids

27.6

Weight (kDa)

6.82

Isoelectric Point (pI)

22.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15470
fragaria_vesca FvH4_4g14100
malus_domestica MD13G1179700.v1.1 MD16G1180700.v1.1
prunus_persica Prupe.1G148200_v2.0.a1 Prupe.1G148200_v2.0.a1
pyrus_communis pycom13g15490 pycom16g15180
rosa_chinensis RchiOBHm_Chr4g0419241
rosa_laevigata RLG00000007822
rosa_multiflora Rmu_sc0004932.1_g000001 Rmu_sc0019148.1_g000001
rosa_roxburghii Rroxscaffold_5G00362220
rosa_rugosa Rorug04G0157600
rosa_samantha Rh4AG219600 Rh4BG221100 Rh4CG232200 Rh4DG218600
rosa_wichuraiana Rw4G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 587
AccBSI CCGCTC 1 cut(s) 158
AccI GTMKAC 2 cut(s) 60, 141
AccII CGCG 1 cut(s) 446
AciI CCGC 3 cut(s) 156, 444, 727
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 466
AdeI CACNNNGTG 1 cut(s) 345
AfaI GTAC 4 cut(s) 86, 449, 617, 668
AfeI AGCGCT 1 cut(s) 650
AgsI TTSAA 1 cut(s) 404
AhdI GACNNNNNGTC 1 cut(s) 67
AjnI CCWGG 2 cut(s) 88, 235
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 3 cut(s) 115, 425, 486
AluI AGCT 3 cut(s) 115, 425, 486
Alw26I GTCTC 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 650
AoxI GGCC 4 cut(s) 281, 369, 511, 675
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 710
AspLEI GCGC 1 cut(s) 651
AspS9I GGNCC 3 cut(s) 282, 494, 675
AsuC2I CCSGG 1 cut(s) 535
AsuHPI GGTGA 2 cut(s) 184, 676
AvaII GGWCC 1 cut(s) 494
BaeGI GKGCMC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 316
BbvCI CCTCAGC 2 cut(s) 421, 734
BbvI GCAGC 1 cut(s) 243
BccI CCATC 5 cut(s) 114, 157, 266, 380, 689
BceAI ACGGC 1 cut(s) 356
BciT130I CCWGG 2 cut(s) 90, 237
BciVI GTATCC 1 cut(s) 11
BcnI CCSGG 1 cut(s) 535
BcoDI GTCTC 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 652
BfuI GTATCC 1 cut(s) 11
BisI GCNGC 2 cut(s) 156, 232
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 2 cut(s) 157, 233
Bme1390I CCNGG 3 cut(s) 90, 237, 535
Bme18I GGWCC 1 cut(s) 494
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgT120I GGNCC 3 cut(s) 282, 494, 675
BmiI GGNNCC 2 cut(s) 284, 589
BmrFI CCNGG 3 cut(s) 90, 237, 535
BmsI GCATC 3 cut(s) 316, 443, 720
BpiI GAAGAC 1 cut(s) 316
Bpu10I CCTNAGC 2 cut(s) 421, 734
Bpu1102I GCTNAGC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 535
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 5 cut(s) 88, 89, 235, 328, 490
BsaXI ACNNNNNCTCC 6 cut(s) 42, 68, 72, 98, 381, 411
Bse1I ACTGG 2 cut(s) 497, 514
BseBI CCWGG 2 cut(s) 90, 237
BseDI CCNNGG 5 cut(s) 88, 89, 235, 328, 490
BseGI GGATG 5 cut(s) 258, 307, 434, 699, 735
BseMII CTCAG 3 cut(s) 173, 435, 725
BseNI ACTGG 2 cut(s) 497, 514
BseRI GAGGAG 3 cut(s) 212, 236, 515
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 4 cut(s) 283, 371, 513, 677
BshNI GGYRCC 1 cut(s) 587
BsiSI CCGG 1 cut(s) 534
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 4 cut(s) 283, 371, 513, 677
Bso31I GGTCTC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 210, 217
Bsp1720I GCTNAGC 1 cut(s) 95
BspACI CCGC 3 cut(s) 156, 444, 727
BspANI GGCC 4 cut(s) 283, 371, 513, 677
BspCNI CTCAG 3 cut(s) 172, 434, 726
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 2 cut(s) 284, 589
BspT107I GGYRCC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 158
BsrI ACTGG 2 cut(s) 497, 514
BssECI CCNNGG 5 cut(s) 88, 89, 235, 328, 490
BssMI GATC 2 cut(s) 210, 217
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 2 cut(s) 90, 237
Bst4CI ACNGT 2 cut(s) 196, 361
Bst6I CTCTTC 1 cut(s) 254
BstDEI CTNAG 7 cut(s) 95, 151, 159, 409, 421, 465, 734
BstF5I GGATG 5 cut(s) 258, 307, 434, 699, 735
BstFNI CGCG 1 cut(s) 446
BstH2I RGCGCY 1 cut(s) 652
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 2 cut(s) 213, 220
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 210, 217
BstMWI GCNNNNNNNGC 3 cut(s) 39, 431, 596
BstNI CCWGG 2 cut(s) 90, 237
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 3 cut(s) 88, 235, 533
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 316
BsuI GTATCC 1 cut(s) 11
BsuRI GGCC 4 cut(s) 283, 371, 513, 677
BtsCI GGATG 5 cut(s) 258, 307, 434, 699, 735
BtsIMutI CAGTG 1 cut(s) 366
CfoI GCGC 1 cut(s) 651
Cfr13I GGNCC 3 cut(s) 282, 494, 675
CseI GACGC 1 cut(s) 31
Csp6I GTAC 4 cut(s) 85, 448, 616, 667
CviAII CATG 2 cut(s) 290, 541
CviQI GTAC 4 cut(s) 85, 448, 616, 667
DdeI CTNAG 7 cut(s) 95, 151, 159, 409, 421, 465, 734
DpnI GATC 2 cut(s) 212, 219
DpnII GATC 2 cut(s) 210, 217
DraIII CACNNNGTG 1 cut(s) 345
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 254
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 494
Eco47III AGCGCT 1 cut(s) 650
Eco57I CTGAAG 1 cut(s) 466
EcoRI GAATTC 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 88, 235
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 2 cut(s) 293, 544
FaiI YATR 8 cut(s) 65, 204, 291, 542, 585, 627, 660, 722
FatI CATG 2 cut(s) 289, 540
FblI GTMKAC 2 cut(s) 60, 141
Fnu4HI GCNGC 2 cut(s) 156, 232
FokI GGATG 5 cut(s) 245, 294, 421, 686, 742
Fsp4HI GCNGC 2 cut(s) 156, 232
GlaI GCGC 1 cut(s) 650
GluI GCNGC 2 cut(s) 156, 232
HaeII RGCGCY 1 cut(s) 652
HaeIII GGCC 4 cut(s) 283, 371, 513, 677
HapII CCGG 1 cut(s) 534
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 651
Hin1II CATG 2 cut(s) 293, 544
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HinfI GANTC 2 cut(s) 68, 147
HpaII CCGG 1 cut(s) 534
HphI GGTGA 2 cut(s) 184, 676
Hpy166II GTNNAC 4 cut(s) 61, 142, 450, 507
Hpy188I TCNGA 4 cut(s) 119, 162, 210, 494
Hpy188III TCNNGA 3 cut(s) 695, 703, 715
Hpy8I GTNNAC 4 cut(s) 61, 142, 450, 507
HpyAV CCTTC 3 cut(s) 272, 463, 463
HpyCH4III ACNGT 2 cut(s) 196, 361
HpyCH4V TGCA 4 cut(s) 13, 289, 434, 544
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 431, 596
HpyF3I CTNAG 7 cut(s) 95, 151, 159, 409, 421, 465, 734
Hsp92II CATG 2 cut(s) 293, 544
HspAI GCGC 1 cut(s) 649
Kzo9I GATC 2 cut(s) 210, 217
LmnI GCTCC 3 cut(s) 120, 211, 389
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 3 cut(s) 316, 443, 720
MaeIII GTNAC 3 cut(s) 190, 355, 529
MalI GATC 2 cut(s) 212, 219
MbiI CCGCTC 1 cut(s) 158
MboI GATC 2 cut(s) 210, 217
MboII GAAGA 5 cut(s) 241, 244, 316, 544, 598
MfeI CAATTG 1 cut(s) 393
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 4 cut(s) 240, 316, 393, 748
MlyI GAGTC 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 710
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 2 cut(s) 26, 545
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 534
MspR9I CCNGG 3 cut(s) 90, 237, 535
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 2 cut(s) 90, 237
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 3 cut(s) 39, 431, 596
NciI CCSGG 1 cut(s) 535
NdeII GATC 2 cut(s) 210, 217
NlaIII CATG 2 cut(s) 293, 544
NlaIV GGNNCC 2 cut(s) 284, 589
NmuCI GTSAC 2 cut(s) 190, 355
NspI RCATGY 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 26
PasI CCCWGGG 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 2 cut(s) 157, 233
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 88, 235
PspGI CCWGG 2 cut(s) 88, 235
PspN4I GGNNCC 2 cut(s) 284, 589
PspPI GGNCC 3 cut(s) 282, 494, 675
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 4 cut(s) 86, 449, 617, 668
RsaNI GTAC 4 cut(s) 85, 448, 616, 667
RseI CAYNNNNRTG 2 cut(s) 26, 545
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 156, 232
Sau3AI GATC 2 cut(s) 210, 217
Sau96I GGNCC 3 cut(s) 282, 494, 675
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 3 cut(s) 90, 237, 535
SduI GDGCHC 1 cut(s) 35
SfaNI GCATC 3 cut(s) 316, 443, 720
SinI GGWCC 1 cut(s) 494
SmiMI CAYNNNNRTG 2 cut(s) 26, 545
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 240, 316, 393, 748
SsiI CCGC 3 cut(s) 156, 444, 727
StyD4I CCNGG 3 cut(s) 88, 235, 533
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 2 cut(s) 196, 361
TasI AATT 4 cut(s) 240, 316, 393, 748
TatI WGTACW 1 cut(s) 666
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 2 cut(s) 190, 355
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 2 cut(s) 190, 355
TspDTI ATGAA 3 cut(s) 17, 118, 529
TspGWI ACGGA 3 cut(s) 30, 38, 159
TspRI CASTG 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 494
XapI RAATTY 1 cut(s) 240
XceI RCATGY 1 cut(s) 293
XmiI GTMKAC 2 cut(s) 60, 141
XmnI GAANNNNTTC 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.