pycom13g15490

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012389
Physical Location & Seq
Reverse (-)
11298502 .. 11300162
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15490.2

Sequence Viewer

Length: 753 bp
ATGAACAAGATGCACGGGTACACGGAGGTGGGTACGAATAGCGGCAAGGCGGCGGAGGTAGACATAGAGTCGGGGGAGTTGTTGTACCCAGGTCTGAGCAAAGGCGAGAACCAGCTCCGATGGGGATTCATCCGCAAGGTGTACGGAATCCTGGCCGCCCAGATGGTTTTGACCACTCTGGTCTCCTTCGTCACCGTACTCTACGCTCCGATCAACGATCTCCTCAAGGGCAGCCCTGGAATTCTCCTCTTCTTCGCCATCCTTCCCCTAATCTTGTTGTGGCCCCTGCATGTGTATCAGCAGAAGCATCCCCTCAATTTTGTCTTCCTCGGACTTTTCACTCTGAGTTTGAGTGTCACAGTTGGCGTGGCCGTTGCGAATACAGACGGAGCAATTGTGCTTGAAGCCTTAATTCTAACTTCGGCTGTGGTTGCATCCTTGACTGCATACACCTTCTGGGCTTCGAGGAAGGGCAAGGACTTCAGCTTCCTCGGACCAGTCTTGTTCACTGGCCTCATTGTCCTCCTCCTAACTGGTTTCATGCAGATGTTCTTCCCTCTTGGCCCTACAACTAATGCCGTATATGGTGCCATTGGCGCTATCATTTTCTCTGGGTACATTGTCTATGACACCGACAACCTGATCAAGCGCTTCACATACGATGAGTACATTTGGGCCTCCATCACTCTTTATCTTGACATTCTGAACCTGTTCCTGACTATATTGCGGATGCTGAGGCAAAGCAACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

251

Amino Acids

27.62

Weight (kDa)

6.83

Isoelectric Point (pI)

24.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15470
fragaria_vesca FvH4_4g14100
malus_domestica MD13G1179700.v1.1 MD16G1180700.v1.1
prunus_persica Prupe.1G148200_v2.0.a1 Prupe.1G148200_v2.0.a1
pyrus_communis pycom13g15490 pycom16g15180
rosa_chinensis RchiOBHm_Chr4g0419241
rosa_laevigata RLG00000007822
rosa_multiflora Rmu_sc0004932.1_g000001 Rmu_sc0019148.1_g000001
rosa_roxburghii Rroxscaffold_5G00362220
rosa_rugosa Rorug04G0157600
rosa_samantha Rh4AG219600 Rh4BG221100 Rh4CG232200 Rh4DG218600
rosa_wichuraiana Rw4G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 587
AccI GTMKAC 1 cut(s) 60
AciI CCGC 6 cut(s) 42, 50, 53, 133, 156, 727
AcoI YGGCCR 2 cut(s) 153, 369
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 466
AfaI GTAC 7 cut(s) 20, 34, 86, 143, 198, 617, 668
AfeI AGCGCT 1 cut(s) 650
AgsI TTSAA 1 cut(s) 404
AhdI GACNNNNNGTC 1 cut(s) 67
AjnI CCWGG 3 cut(s) 88, 150, 235
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 2 cut(s) 115, 486
AluI AGCT 2 cut(s) 115, 486
Alw26I GTCTC 1 cut(s) 187
Aor51HI AGCGCT 1 cut(s) 650
AoxI GGCC 6 cut(s) 153, 281, 369, 511, 562, 675
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 710
AspLEI GCGC 2 cut(s) 599, 651
AspS9I GGNCC 4 cut(s) 282, 494, 563, 675
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 494
BanI GGYRCC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 316
BbvCI CCTCAGC 1 cut(s) 734
BbvI GCAGC 1 cut(s) 243
BccI CCATC 4 cut(s) 114, 157, 266, 689
BceAI ACGGC 2 cut(s) 356, 563
BciT130I CCWGG 3 cut(s) 90, 152, 237
BclI TGATCA 1 cut(s) 642
BcoDI GTCTC 1 cut(s) 187
BfoI RGCGCY 2 cut(s) 600, 652
BisI GCNGC 4 cut(s) 43, 51, 156, 232
BlsI GCNGC 4 cut(s) 44, 52, 157, 233
Bme1390I CCNGG 3 cut(s) 90, 152, 237
Bme18I GGWCC 1 cut(s) 494
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgT120I GGNCC 4 cut(s) 282, 494, 563, 675
BmiI GGNNCC 2 cut(s) 284, 589
BmrFI CCNGG 3 cut(s) 90, 152, 237
BmsI GCATC 3 cut(s) 316, 443, 720
BpiI GAAGAC 1 cut(s) 316
Bpu10I CCTNAGC 1 cut(s) 734
BpuEI CTTGAG 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 4 cut(s) 88, 235, 328, 490
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 381, 411
Bse1I ACTGG 3 cut(s) 497, 514, 538
BseBI CCWGG 3 cut(s) 90, 152, 237
BseDI CCNNGG 4 cut(s) 88, 235, 328, 490
BseGI GGATG 5 cut(s) 129, 258, 307, 434, 735
BseMII CTCAG 3 cut(s) 86, 335, 725
BseNI ACTGG 3 cut(s) 497, 514, 538
BseRI GAGGAG 3 cut(s) 212, 236, 515
BseXI GCAGC 1 cut(s) 243
BshFI GGCC 6 cut(s) 155, 283, 371, 513, 564, 677
BshNI GGYRCC 1 cut(s) 587
BsmAI GTCTC 1 cut(s) 187
BsnI GGCC 6 cut(s) 155, 283, 371, 513, 564, 677
Bso31I GGTCTC 1 cut(s) 187
Bsp143I GATC 3 cut(s) 210, 217, 642
BspACI CCGC 6 cut(s) 42, 50, 53, 133, 156, 727
BspANI GGCC 6 cut(s) 155, 283, 371, 513, 564, 677
BspCNI CTCAG 3 cut(s) 87, 336, 726
BspLI GGNNCC 2 cut(s) 284, 589
BspT107I GGYRCC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 187
BsrI ACTGG 3 cut(s) 497, 514, 538
BssECI CCNNGG 4 cut(s) 88, 235, 328, 490
BssMI GATC 3 cut(s) 210, 217, 642
Bst2UI CCWGG 3 cut(s) 90, 152, 237
Bst4CI ACNGT 2 cut(s) 196, 361
Bst6I CTCTTC 1 cut(s) 254
BstDEI CTNAG 3 cut(s) 95, 344, 734
BstF5I GGATG 5 cut(s) 129, 258, 307, 434, 735
BstH2I RGCGCY 2 cut(s) 600, 652
BstHHI GCGC 2 cut(s) 599, 651
BstKTI GATC 3 cut(s) 213, 220, 645
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 210, 217, 642
BstMWI GCNNNNNNNGC 2 cut(s) 431, 596
BstNI CCWGG 3 cut(s) 90, 152, 237
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 3 cut(s) 88, 150, 235
BstV1I GCAGC 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 316
BsuRI GGCC 6 cut(s) 155, 283, 371, 513, 564, 677
BtsCI GGATG 5 cut(s) 129, 258, 307, 434, 735
BtsIMutI CAGTG 1 cut(s) 507
CfoI GCGC 2 cut(s) 599, 651
Cfr13I GGNCC 4 cut(s) 282, 494, 563, 675
Csp6I GTAC 7 cut(s) 19, 33, 85, 142, 197, 616, 667
CviAII CATG 2 cut(s) 290, 541
CviQI GTAC 7 cut(s) 19, 33, 85, 142, 197, 616, 667
DdeI CTNAG 3 cut(s) 95, 344, 734
DpnI GATC 3 cut(s) 212, 219, 644
DpnII GATC 3 cut(s) 210, 217, 642
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 2 cut(s) 153, 369
Eam1104I CTCTTC 1 cut(s) 254
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 494
Eco47III AGCGCT 1 cut(s) 650
Eco57I CTGAAG 1 cut(s) 466
EcoRI GAATTC 1 cut(s) 240
EcoRII CCWGG 3 cut(s) 88, 150, 235
FaeI CATG 2 cut(s) 293, 544
FaiI YATR 9 cut(s) 65, 291, 448, 542, 583, 585, 627, 658, 722
FatI CATG 2 cut(s) 289, 540
FbaI TGATCA 1 cut(s) 642
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 4 cut(s) 43, 51, 156, 232
FokI GGATG 5 cut(s) 116, 245, 294, 421, 742
Fsp4HI GCNGC 4 cut(s) 43, 51, 156, 232
GlaI GCGC 2 cut(s) 598, 650
GluI GCNGC 4 cut(s) 43, 51, 156, 232
HaeII RGCGCY 2 cut(s) 600, 652
HaeIII GGCC 6 cut(s) 155, 283, 371, 513, 564, 677
HhaI GCGC 2 cut(s) 599, 651
Hin1II CATG 2 cut(s) 293, 544
Hin6I GCGC 2 cut(s) 597, 649
HinP1I GCGC 2 cut(s) 597, 649
HinfI GANTC 3 cut(s) 68, 126, 147
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 4 cut(s) 21, 61, 142, 507
Hpy188I TCNGA 7 cut(s) 96, 119, 210, 332, 345, 494, 705
Hpy188III TCNNGA 2 cut(s) 695, 715
Hpy8I GTNNAC 4 cut(s) 21, 61, 142, 507
HpyAV CCTTC 4 cut(s) 196, 272, 463, 463
HpyCH4III ACNGT 2 cut(s) 196, 361
HpyCH4V TGCA 5 cut(s) 13, 289, 434, 446, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 596
HpyF3I CTNAG 3 cut(s) 95, 344, 734
Hsp92II CATG 2 cut(s) 293, 544
HspAI GCGC 2 cut(s) 597, 649
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 3 cut(s) 210, 217, 642
LmnI GCTCC 3 cut(s) 120, 211, 389
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 3 cut(s) 316, 443, 720
MaeIII GTNAC 2 cut(s) 190, 355
MalI GATC 3 cut(s) 212, 219, 644
MboI GATC 3 cut(s) 210, 217, 642
MboII GAAGA 4 cut(s) 241, 244, 316, 544
MfeI CAATTG 1 cut(s) 393
MluCI AATT 5 cut(s) 240, 316, 393, 411, 748
MlyI GAGTC 1 cut(s) 77
MroXI GAANNNNTTC 1 cut(s) 710
MseI TTAA 1 cut(s) 410
MslI CAYNNNNRTG 2 cut(s) 26, 545
MspR9I CCNGG 3 cut(s) 90, 152, 237
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 3 cut(s) 90, 152, 237
MwoI GCNNNNNNNGC 2 cut(s) 431, 596
NdeII GATC 3 cut(s) 210, 217, 642
NlaIII CATG 2 cut(s) 293, 544
NlaIV GGNNCC 2 cut(s) 284, 589
NmuCI GTSAC 2 cut(s) 190, 355
NspI RCATGY 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 710
PfeI GAWTC 2 cut(s) 126, 147
PkrI GCNGC 4 cut(s) 44, 52, 157, 233
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 3 cut(s) 88, 150, 235
PspGI CCWGG 3 cut(s) 88, 150, 235
PspN4I GGNNCC 2 cut(s) 284, 589
PspPI GGNCC 4 cut(s) 282, 494, 563, 675
RsaI GTAC 7 cut(s) 20, 34, 86, 143, 198, 617, 668
RsaNI GTAC 7 cut(s) 19, 33, 85, 142, 197, 616, 667
RseI CAYNNNNRTG 2 cut(s) 26, 545
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 4 cut(s) 43, 51, 156, 232
Sau3AI GATC 3 cut(s) 210, 217, 642
Sau96I GGNCC 4 cut(s) 282, 494, 563, 675
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 3 cut(s) 90, 152, 237
SetI ASST 9 cut(s) 30, 60, 94, 117, 141, 455, 488, 642, 711
SfaNI GCATC 3 cut(s) 316, 443, 720
SinI GGWCC 1 cut(s) 494
SmiMI CAYNNNNRTG 2 cut(s) 26, 545
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 5 cut(s) 240, 316, 393, 411, 748
SsiI CCGC 6 cut(s) 42, 50, 53, 133, 156, 727
StyD4I CCNGG 3 cut(s) 88, 150, 235
TaaI ACNGT 2 cut(s) 196, 361
TaqI TCGA 1 cut(s) 464
TasI AATT 5 cut(s) 240, 316, 393, 411, 748
TatI WGTACW 1 cut(s) 666
TauI GCSGC 3 cut(s) 45, 53, 158
TfiI GAWTC 2 cut(s) 126, 147
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 2 cut(s) 190, 355
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 2 cut(s) 190, 355
TspDTI ATGAA 3 cut(s) 17, 118, 529
TspGWI ACGGA 3 cut(s) 38, 159, 402
TspRI CASTG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 494
XapI RAATTY 1 cut(s) 240
XceI RCATGY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.